Tableau information
Concept source: d2pzza1 amino acid (a.a.) range (LEU2)(LYS47)
nSSEs in this Concept: 4
String of secondary struct.elems. (SSEs) defining this concept: EHEE
Each SSE's a.a.range: (start resi) (end resi) SSEtype (H=Helix; E=Strand) followed by a numeric SSE ID:
(LEU2) (PRO12) E1
(LYS16) (PHE27) H2
(LYS31) (GLU36) E3
(PHE41) (LYS47) E4
Orientation angles° of SSE-pairs; those in contact shown in bold font
E1
H2 157.9° H2
E3 -30.5° 154.9° E3
E4 166.8° -23.1° 161.1°
Footnote: Inferred from this concept's usages (listed below) was the angular variance of 1σ = ±7.4° about each orientation angle shown above.
Loci of concept usages (shown as a range of a.a. residue ids) in SCOP(v2.05) domains, along with their brief legend taken from SCOP
d1xg2a_ : (ASN4) (GLU44) [view usage] : b.80.1.5 |Single-stranded right-handed beta-helix |Pectin lyase-like |Pectin methylesterase |automated matches |Solanum lycopersicum [TaxId: 4081]
d2cdqa3 : (ARG420) (ILE465) [view usage] : d.58.18.10 |Ferredoxin-like |ACT-like |Aspartokinase allosteric domain-like |Aspartokinase |Thale cress (Arabidopsis thaliana) [TaxId: 3702]
d1s3la_ : (ILE54) (VAL86) [view usage] : d.159.1.7 |Metallo-dependent phosphatases |Metallo-dependent phosphatases |YfcE-like |Putative phosphodiesterase MJ0936 |Methanococcus jannaschii [TaxId: 2190]
d1q15a2 : (ASN3) (GLU38) [view usage] : d.153.1.1 |Ntn hydrolase-like |N-terminal nucleophile aminohydrolases (Ntn hydrolases) |Class II glutamine amidotransferases |beta-Lactam synthetase |Pectobacterium carotovorum [TaxId: 554]
d2i62b_ : (GLY192) (PRO261) [view usage] : c.66.1.0 |S-adenosyl-L-methionine-dependent methyltransferases |S-adenosyl-L-methionine-dependent methyltransferases |automated matches |automated matches |Mouse (Mus musculus) [TaxId: 10090]
d1jyha_ : (GLY15) (VAL68) [view usage] : d.60.1.3 |Probable bacterial effector-binding domain |Probable bacterial effector-binding domain |Gyrase inhibitory protein GyrI (SbmC, YeeB) |Gyrase inhibitory protein GyrI (SbmC, YeeB) |Escherichia coli [TaxId: 562]
d1fnma5 : (ILE601) (ALA645) [view usage] : d.58.11.1 |Ferredoxin-like |EF-G C-terminal domain-like |EF-G/eEF-2 domains III and V |Elongation factor G (EF-G) |Thermus thermophilus [TaxId: 274]
d1nwaa_ : (SER3) (PHE58) [view usage] : d.58.28.1 |Ferredoxin-like |Peptide methionine sulfoxide reductase |Peptide methionine sulfoxide reductase |Peptide methionine sulfoxide reductase |Mycobacterium tuberculosis [TaxId: 1773]
d4fnha_ : (MET1) (GLU58) [view usage] : d.58.4.5 |Ferredoxin-like |Dimeric alpha+beta barrel |PG130-like |Hypothetical protein PG130 (SAV0165) |Staphylococcus aureus [TaxId: 1280]
d1yjra_ : (GLY4) (TYR48) [view usage] : d.58.17.0 |Ferredoxin-like |HMA, heavy metal-associated domain |automated matches |automated matches |Human (Homo sapiens) [TaxId: 9606]
d4nbpa_ : (ALA158) (HIS202) [view usage] : d.89.1.1 |Origin of replication-binding domain, RBD-like |Origin of replication-binding domain, RBD-like |The origin DNA-binding domain of SV40 T-antigen |The origin DNA-binding domain of SV40 T-antigen |Jc polyomavirus [TaxId: 10632]
d2gvia1 : (ARG46) (ARG93) [view usage] : d.81.3.1 |FwdE/GAPDH domain-like |FwdE-like |FwdE-like |Uncharacterized protein Ta1109 |Thermoplasma acidophilum [TaxId: 2303]
d1fsza2 : (ALA285) (GLY339) [view usage] : d.79.2.1 |Bacillus chorismate mutase-like |Tubulin C-terminal domain-like |Tubulin, C-terminal domain |Cell-division protein FtsZ |Methanococcus jannaschii [TaxId: 2190]
d1knwa2 : (ILE192) (THR241) [view usage] : c.1.6.1 |TIM beta/alpha-barrel |PLP-binding barrel |Alanine racemase-like, N-terminal domain |Diaminopimelate decarboxylase LysA |Escherichia coli [TaxId: 562]
d1eayc_ : (PRO159) (ILE198) [view usage] : d.58.24.1 |Ferredoxin-like |CheY-binding domain of CheA |CheY-binding domain of CheA |CheY-binding domain of CheA |Escherichia coli [TaxId: 562]
d1hkya_ : (ILE26) (ALA61) [view usage] : g.10.1.3 |Hairpin loop containing domain-like |Hairpin loop containing domain-like |Pan module (APPLE domain) |Pan module from microneme protein 5 (MIC-5) |Eimeria tenella [TaxId: 5802]
d1eayd_ : (PRO159) (ILE198) [view usage] : d.58.24.1 |Ferredoxin-like |CheY-binding domain of CheA |CheY-binding domain of CheA |CheY-binding domain of CheA |Escherichia coli [TaxId: 562]
d4igia_ : (ASP1026) (PHE1077) [view usage] : c.62.1.0 |vWA-like |vWA-like |automated matches |automated matches |Mouse (Mus musculus) [TaxId: 10090]
d2l3ma_ : (ASN2) (THR48) [view usage] : d.58.17.0 |Ferredoxin-like |HMA, heavy metal-associated domain |automated matches |automated matches |Bacillus anthracis [TaxId: 198094]
d2pzzb_ : (LEU2) (LYS47) [view usage] : d.77.1.2 |RL5-like |RL5-like |SSO1042-like |Hypotheical protein MJ1564 |Methanocaldococcus jannaschii [TaxId: 2190]
d2j0wa3 : (LEU386) (PRO432) [view usage] : d.58.18.10 |Ferredoxin-like |ACT-like |Aspartokinase allosteric domain-like |Aspartokinase |Escherichia coli [TaxId: 562]
d4gwba_ : (LYS3) (PHE56) [view usage] : d.58.28.1 |Ferredoxin-like |Peptide methionine sulfoxide reductase |Peptide methionine sulfoxide reductase |automated matches |Sinorhizobium meliloti [TaxId: 266834]
d2wnya_ : (HIS6) (LEU56) [view usage] : d.77.1.0 |RL5-like |RL5-like |automated matches |automated matches |Methanothermobacter thermautotrophicus [TaxId: 145262]
d1g10a_ : (ASN11) (ALA52) [view usage] : d.137.1.1 |Monooxygenase (hydroxylase) regulatory protein |Monooxygenase (hydroxylase) regulatory protein |Monooxygenase (hydroxylase) regulatory protein |Toluene-4-monooxygenase catalytic effector protein |Pseudomonas mendocina [TaxId: 300]
d2ab5a1 : (LEU291) (ASN337) [view usage] : d.95.2.0 |Homing endonuclease-like |Homing endonucleases |automated matches |automated matches |Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
d2i62d_ : (GLY192) (PRO261) [view usage] : c.66.1.0 |S-adenosyl-L-methionine-dependent methyltransferases |S-adenosyl-L-methionine-dependent methyltransferases |automated matches |automated matches |Mouse (Mus musculus) [TaxId: 10090]
d1exia2 : (ALA218) (ARG275) [view usage] : d.60.1.1 |Probable bacterial effector-binding domain |Probable bacterial effector-binding domain |Multidrug-binding domain of transcription activator BmrR |Multidrug-binding domain of transcription activator BmrR |Bacillus subtilis [TaxId: 1423]
d4it2a_ : (ASP125) (LYS179) [view usage] : d.278.1.1 |Ligand-binding domain in the NO signalling and Golgi transport |Ligand-binding domain in the NO signalling and Golgi transport |H-NOX domain |Methyl-accepting chemotaxis protein |Thermoanaerobacter tengcongensis [TaxId: 119072]
d2fk3e_ : (ALA132) (PRO188) [view usage] : d.230.3.1 |Dodecin subunit-like |Amyloid beta a4 protein copper binding domain (domain 2) |Amyloid beta a4 protein copper binding domain (domain 2) |Amyloid beta a4 protein copper binding domain (domain 2) |Human (Homo sapiens) [TaxId: 9606]
d2ew9a1 : (ALA2) (LYS47) [view usage] : d.58.17.0 |Ferredoxin-like |HMA, heavy metal-associated domain |automated matches |automated matches |Human (Homo sapiens) [TaxId: 9606]
d2moba_ : (ALA37) (ALA80) [view usage] : d.137.1.1 |Monooxygenase (hydroxylase) regulatory protein |Monooxygenase (hydroxylase) regulatory protein |Monooxygenase (hydroxylase) regulatory protein |Soluble methane monooxygenase regulatory protein B |Methylosinus trichosporium [TaxId: 426]
d1n3ga_ : (MET3) (ILE54) [view usage] : d.204.1.1 |Ribosome binding protein Y (YfiA homologue) |Ribosome binding protein Y (YfiA homologue) |Ribosome binding protein Y (YfiA homologue) |Ribosome binding protein Y (YfiA homologue) |Escherichia coli [TaxId: 562]
d1qxwa_ : (ASN164) (SER207) [view usage] : d.127.1.1 |Creatinase/aminopeptidase |Creatinase/aminopeptidase |Creatinase/aminopeptidase |Methionine aminopeptidase |Staphylococcus aureus [TaxId: 1280]
d1vi7a2 : (PRO138) (PRO181) [view usage] : d.58.11.2 |Ferredoxin-like |EF-G C-terminal domain-like |YigZ C-terminal domain-like |Hypothetical protein YigZ, C-terminal domain |Escherichia coli [TaxId: 562]
d4ihka_ : (ASP1026) (PHE1077) [view usage] : c.62.1.0 |vWA-like |vWA-like |automated matches |automated matches |Mouse (Mus musculus) [TaxId: 10090]
d1gupa2 : (GLU232) (PRO302) [view usage] : d.13.1.2 |HIT-like |HIT-like |Hexose-1-phosphate uridylyltransferase |Galactose-1-phosphate uridylyltransferase |Escherichia coli [TaxId: 562]
d2oaua2 : (PRO182) (VAL239) [view usage] : d.58.43.1 |Ferredoxin-like |Mechanosensitive channel protein MscS (YggB), C-terminal domain |Mechanosensitive channel protein MscS (YggB), C-terminal domain |Mechanosensitive channel protein MscS (YggB), C-terminal domain |Escherichia coli [TaxId: 562]
d1gq8a_ : (ASN8) (GLU48) [view usage] : b.80.1.5 |Single-stranded right-handed beta-helix |Pectin lyase-like |Pectin methylesterase |Pectin methylesterase PemA |Carrot (Daucus carota) [TaxId: 4039]
d2nxea1 : (GLY212) (TYR252) [view usage] : c.66.1.39 |S-adenosyl-L-methionine-dependent methyltransferases |S-adenosyl-L-methionine-dependent methyltransferases |Ribosomal protein L11 methyltransferase PrmA |PrmA-like protein TTHA0656 (TT0836) |Thermus thermophilus [TaxId: 274]
d1jw3a_ : (GLU47) (GLY102) [view usage] : d.208.1.1 |MTH1598-like |MTH1598-like |MTH1598-like |Hypothetical protein MTH1598 |Methanobacterium thermoautotrophicum [TaxId: 145262]
d1pf5a_ : (ILE75) (PRO129) [view usage] : d.79.1.1 |Bacillus chorismate mutase-like |YjgF-like |YjgF/L-PSP |Hypothetical protein YjgH |Escherichia coli [TaxId: 562]
d2pzza1 : (LEU2) (LYS47) [view usage] : d.77.1.2 |RL5-like |RL5-like |SSO1042-like |Hypotheical protein MJ1564 |Methanocaldococcus jannaschii [TaxId: 2190]
List of distinct SCOP folds where this concept is used (in one or more of its domains):
b.80, c.1, d.159, d.58, c.66, d.153, d.81, d.127, c.62, d.278, d.79, d.137, d.95, d.13, d.89, g.10, d.77, d.230, d.204, d.60,
d.208