Tableau information
Concept source: d1zj8a2 amino acid (a.a.) range (ASP123)(GLY154)
nSSEs in this Concept: 4
String of secondary struct.elems. (SSEs) defining this concept: EEHH
Each SSE's a.a.range: (start resi) (end resi) SSEtype (H=Helix; E=Strand) followed by a numeric SSE ID:
(ASP123) (ASP129) E1
(ASN132) (TRP137) E2
(GLU139) (VAL143) H3
(VAL143) (GLY154) H4
Orientation angles° of SSE-pairs; those in contact shown in bold font
E1
E2 148.0° E2
H3 -66.5° 135.8° H3
H4 -56.0° 155.8° -39.2°
Footnote: Inferred from this concept's usages (listed below) was the angular variance of 1σ = ±13.0° about each orientation angle shown above.
Loci of concept usages (shown as a range of a.a. residue ids) in SCOP(v2.05) domains, along with their brief legend taken from SCOP
d1zj8a2 : (ASP123) (GLY154) [view usage] : d.58.36.1 |Ferredoxin-like |Nitrite/Sulfite reductase N-terminal domain-like |Duplicated SiR/NiR-like domains 1 and 3 |Sulfite reductase NirA |Mycobacterium tuberculosis [TaxId: 1773]
d1bsqa_ : (GLY17) (ARG40) [view usage] : b.60.1.1 |Lipocalins |Lipocalins |Retinol binding protein-like |beta-Lactoglobulin |Cow (Bos taurus) [TaxId: 9913]
d1yqea1 : (GLU131) (ALA179) [view usage] : c.56.7.1 |Phosphorylase/hydrolase-like |AF0625-like |AF0625-like |Hypothetical protein AF0625 |Archaeoglobus fulgidus [TaxId: 2234]
d3d4ja2 : (ALA301) (GLY329) [view usage] : d.58.26.0 |Ferredoxin-like |GHMP Kinase, C-terminal domain |automated matches |automated matches |Human (Homo sapiens) [TaxId: 9606]
d1frgh2 : (PRO391) (SER416) [view usage] : b.1.1.2 |Immunoglobulin-like beta-sandwich |Immunoglobulin |C1 set domains (antibody constant domain-like) |Immunoglobulin heavy chain gamma constant domain 1, CH1-gamma |Mouse (Mus musculus) [TaxId: 10090]
d1smpa1 : (SER389) (HIS418) [view usage] : b.80.7.1 |Single-stranded right-handed beta-helix |beta-Roll |Serralysin-like metalloprotease, C-terminal domain |Metalloprotease |Serratia marcescens [TaxId: 615]
d3st6a_ : (VAL254) (ALA313) [view usage] : d.161.1.1 |ADC synthase |ADC synthase |ADC synthase |Salicylate synthase MbtI |Mycobacterium tuberculosis [TaxId: 1773]
d1zora_ : (VAL4) (ILE31) [view usage] : c.77.1.0 |Isocitrate/Isopropylmalate dehydrogenase-like |Isocitrate/Isopropylmalate dehydrogenase-like |automated matches |automated matches |Thermotoga maritima [TaxId: 243274]
d2pw0a1 : (ALA13) (LYS73) [view usage] : d.21.1.0 |Diaminopimelate epimerase-like |Diaminopimelate epimerase-like |automated matches |automated matches |Shewanella oneidensis [TaxId: 70863]
d2v4ja2 : (GLY128) (ASN161) [view usage] : d.58.36.2 |Ferredoxin-like |Nitrite/Sulfite reductase N-terminal domain-like |DsrA/DsrB N-terminal-domain-like |Dissimilatory sulfite reductase subunit alpha, DsrA |Desulfovibrio vulgaris [TaxId: 881]
d1rlka_ : (VAL77) (LYS115) [view usage] : c.131.1.1 |Peptidyl-tRNA hydrolase II |Peptidyl-tRNA hydrolase II |Peptidyl-tRNA hydrolase II |Hypothetical protein TA0108 |Thermoplasma acidophilum [TaxId: 2303]
d3tcra_ : (ARG134) (SER175) [view usage] : c.57.1.0 |Molybdenum cofactor biosynthesis proteins |Molybdenum cofactor biosynthesis proteins |automated matches |automated matches |Mycobacterium abscessus [TaxId: 561007]
d3hrva_ : (MET93) (PRO132) [view usage] : d.24.1.2 |Pili subunits |Pili subunits |TcpA-like pilin |Toxin-coregulated pilus subunit TcpA |Vibrio cholerae [TaxId: 666]
d2quxd_ : (THR51) (VAL119) [view usage] : d.85.1.1 |RNA bacteriophage capsid protein |RNA bacteriophage capsid protein |RNA bacteriophage capsid protein |automated matches |Pseudomonas phage [TaxId: 12023]
d1o4ua2 : (LEU60) (SER103) [view usage] : d.41.2.1 |alpha/beta-Hammerhead |Nicotinate/Quinolinate PRTase N-terminal domain-like |NadC N-terminal domain-like |Quinolinic acid phosphoribosyltransferase (Nicotinate-nucleotide pyrophosphorylase, NadC), N-terminal domain |Thermotoga maritima [TaxId: 2336]
d2kfoa_ : (GLY127) (PRO158) [view usage] : d.6.1.1 |Prion-like |Prion-like |Prion-like |automated matches |Mouse (Mus musculus) [TaxId: 10090]
d1pzca_ : (ASN63) (GLY85) [view usage] : b.6.1.1 |Cupredoxin-like |Cupredoxins |Plastocyanin/azurin-like |Pseudoazurin |Alcaligenes faecalis, strain s-6 [TaxId: 511]
d1ulaa_ : (GLY127) (PRO150) [view usage] : c.56.2.1 |Phosphorylase/hydrolase-like |Purine and uridine phosphorylases |Purine and uridine phosphorylases |Purine nucleoside phosphorylase, PNP |Human (Homo sapiens) [TaxId: 9606]
d1pd5e_ : (LYS175) (GLU214) [view usage] : c.43.1.1 |CoA-dependent acyltransferases |CoA-dependent acyltransferases |CAT-like |Chloramphenicol acetyltransferase, CAT |Escherichia coli [TaxId: 562]
d2vs4a_ : (ILE176) (ALA212) [view usage] : c.68.1.9 |Nucleotide-diphospho-sugar transferases |Nucleotide-diphospho-sugar transferases |alpha-1,3-galactosyltransferase-like |alpha-1,3-galactosyltransferase catalytic domain |Cow (Bos taurus) [TaxId: 9913]
d2dsna_ : (TYR263) (SER301) [view usage] : c.69.1.18 |alpha/beta-Hydrolases |alpha/beta-Hydrolases |Bacterial lipase |automated matches |Geobacillus zalihae [TaxId: 213419]
d1cb8a3 : (ALA571) (ALA599) [view usage] : b.30.5.2 |Supersandwich |Galactose mutarotase-like |Hyaluronate lyase-like, central domain |Chondroitinase AC |Pedobacter heparinus (Flavobacterium heparinum) [TaxId: 984]
d3fn8a2 : (SER131) (VAL162) [view usage] : d.357.1.2 |NosL/MerB-like |NosL/MerB-like |MerB-like |Alkylmercury lyase MerB |Escherichia coli [TaxId: 562]
d2fuca1 : (PHE128) (ALA175) [view usage] : c.108.1.10 |HAD-like |HAD-like |Predicted hydrolases Cof |Phosphomannomutase 1 |Human (Homo sapiens) [TaxId: 9606]
d1q7sa_ : (THR139) (LEU176) [view usage] : c.131.1.1 |Peptidyl-tRNA hydrolase II |Peptidyl-tRNA hydrolase II |Peptidyl-tRNA hydrolase II |Bit1 (Cgi-147) |Human (Homo sapiens) [TaxId: 9606]
d3f0oa2 : (SER131) (VAL162) [view usage] : d.357.1.2 |NosL/MerB-like |NosL/MerB-like |MerB-like |Alkylmercury lyase MerB |Escherichia coli [TaxId: 562]
d1x1oa1 : (ALA82) (GLY116) [view usage] : d.41.2.0 |alpha/beta-Hammerhead |Nicotinate/Quinolinate PRTase N-terminal domain-like |automated matches |automated matches |Thermus thermophilus HB8 [TaxId: 300852]
d1mssa_ : (THR31) (ARG54) [view usage] : c.1.1.1 |TIM beta/alpha-barrel |Triosephosphate isomerase (TIM) |Triosephosphate isomerase (TIM) |Triosephosphate isomerase |Trypanosome (Trypanosoma brucei) [TaxId: 5691]
d3hrvb_ : (MET93) (PRO132) [view usage] : d.24.1.2 |Pili subunits |Pili subunits |TcpA-like pilin |Toxin-coregulated pilus subunit TcpA |Vibrio cholerae [TaxId: 666]
d4a6tc_ : (ASP371) (ASN412) [view usage] : c.67.1.0 |PLP-dependent transferase-like |PLP-dependent transferases |automated matches |automated matches |Chromobacterium violaceum [TaxId: 536]
d3logd_ : (VAL254) (ALA313) [view usage] : d.161.1.1 |ADC synthase |ADC synthase |ADC synthase |Salicylate synthase MbtI |Mycobacterium tuberculosis [TaxId: 1773]
d1yk3a1 : (GLY104) (LEU147) [view usage] : d.108.1.1 |Acyl-CoA N-acyltransferases (Nat) |Acyl-CoA N-acyltransferases (Nat) |N-acetyl transferase, NAT |Hypothetical protein Rv1347c/MT1389 |Mycobacterium tuberculosis [TaxId: 1773]
d1vk3a1 : (GLY55) (GLY90) [view usage] : d.79.4.1 |Bacillus chorismate mutase-like |PurM N-terminal domain-like |PurM N-terminal domain-like |Phosphoribosylformylglycinamidine synthase II, domains 1 and 3 |Thermotoga maritima [TaxId: 2336]
d4fdma_ : (TYR263) (SER301) [view usage] : c.69.1.18 |alpha/beta-Hydrolases |alpha/beta-Hydrolases |Bacterial lipase |automated matches |Bacillus sp. [TaxId: 307644]
d1d02a_ : (ALA83) (ILE137) [view usage] : c.52.1.8 |Restriction endonuclease-like |Restriction endonuclease-like |Restriction endonuclease MunI |Restriction endonuclease MunI |Mycoplasma, unidentified species [TaxId: 2093]
d3j38h_ : (ARG46) (LYS84) [view usage] : i.1.1.1 |Ribosome and ribosomal fragments |Ribosome and ribosomal fragments |Ribosome complexes |Eukaryotic, cytoplasmic (80S ribosome functional complex) |Drosophila melanogaster [TaxId: 7227]
d1kq3a_ : (ILE2) (GLY29) [view usage] : e.22.1.2 |Dehydroquinate synthase-like |Dehydroquinate synthase-like |Iron-containing alcohol dehydrogenase |Glycerol dehydrogenase |Thermotoga maritima [TaxId: 2336]
d2id0a2 : (SER142) (ASN169) [view usage] : b.40.4.5 |OB-fold |Nucleic acid-binding proteins |Cold shock DNA-binding domain-like |Exoribonuclease 2, RNB |Escherichia coli [TaxId: 562]
d1pytc_ : (PRO535) (GLY573) [view usage] : b.47.1.2 |Trypsin-like serine proteases |Trypsin-like serine proteases |Eukaryotic proteases |Procarboxypeptidase A-S6 subunit III (zymogen E) |Cow (Bos taurus) [TaxId: 9913]
d4u7ja2 : (SER175) (SER203) [view usage] : d.210.1.0 |Argininosuccinate synthetase, C-terminal domain |Argininosuccinate synthetase, C-terminal domain |automated matches |automated matches |Mycobacterium thermoresistibile [TaxId: 1078020]
d2c81a_ : (SER299) (LEU331) [view usage] : c.67.1.0 |PLP-dependent transferase-like |PLP-dependent transferases |automated matches |automated matches |Bacillus circulans [TaxId: 1397]
d1d02b_ : (ALA83) (ILE137) [view usage] : c.52.1.8 |Restriction endonuclease-like |Restriction endonuclease-like |Restriction endonuclease MunI |Restriction endonuclease MunI |Mycoplasma, unidentified species [TaxId: 2093]
d2quxm_ : (TYR53) (VAL119) [view usage] : d.85.1.1 |RNA bacteriophage capsid protein |RNA bacteriophage capsid protein |RNA bacteriophage capsid protein |automated matches |Pseudomonas phage [TaxId: 12023]
d2cpza1 : (GLN394) (GLY425) [view usage] : d.58.7.1 |Ferredoxin-like |RNA-binding domain, RBD |Canonical RBD |CUG triplet repeat RNA-binding protein 1 |Human (Homo sapiens) [TaxId: 9606]
d3ta1d_ : (MET28) (SER80) [view usage] : d.58.5.0 |Ferredoxin-like |GlnB-like |automated matches |automated matches |Archaeoglobus fulgidus [TaxId: 224325]
d4ba4a_ : (ASP371) (ASN412) [view usage] : c.67.1.0 |PLP-dependent transferase-like |PLP-dependent transferases |automated matches |automated matches |Chromobacterium violaceum [TaxId: 536]
d1i7qa_ : (ALA311) (ARG375) [view usage] : d.161.1.1 |ADC synthase |ADC synthase |ADC synthase |Anthranilate synthase aminodeoxyisochorismate synthase/lyase subunit, TrpE |Serratia marcescens [TaxId: 615]
List of distinct SCOP folds where this concept is used (in one or more of its domains):
b.80, c.1, c.67, c.69, d.58, i.1, c.68, c.108, b.30, b.47, c.56, c.77, e.22, b.40, b.60, b.6, c.57, b.1, d.108, c.43,
d.21, d.79, c.52, d.41, d.85, d.6, d.24, d.161, c.131, d.357, d.210