Tableau information
Concept source: d2vyta1 amino acid (a.a.) range (ALA91)(GLY125)
nSSEs in this Concept: 4
String of secondary struct.elems. (SSEs) defining this concept: EEHH
Each SSE's a.a.range: (start resi) (end resi) SSEtype (H=Helix; E=Strand) followed by a numeric SSE ID:
(ALA91) (LEU97) E1
(ARG103) (LEU109) E2
(LEU109) (GLN116) H3
(THR120) (GLY125) H4
Orientation angles° of SSE-pairs; those in contact shown in bold font
E1
E2 147.6° E2
H3 29.4° 118.6° H3
H4 -74.5° 79.6° -49.0°
Footnote: Inferred from this concept's usages (listed below) was the angular variance of 1σ = ±13.0° about each orientation angle shown above.
Loci of concept usages (shown as a range of a.a. residue ids) in SCOP(v2.05) domains, along with their brief legend taken from SCOP
d2cfza2 : (GLU338) (GLY379) [view usage] : d.157.1.13 |Metallo-hydrolase/oxidoreductase |Metallo-hydrolase/oxidoreductase |Alkylsulfatase-like |Alkylsulfatase SdsA1 |Pseudomonas aeruginosa [TaxId: 287]
d4kooa_ : (GLY189) (LEU245) [view usage] : d.18.1.2 |ssDNA-binding transcriptional regulator domain |ssDNA-binding transcriptional regulator domain |Plant transcriptional regulator PBF-2 |automated matches |Thale cress (Arabidopsis thaliana) [TaxId: 3702]
d1p9ea_ : (ASP141) (LYS187) [view usage] : d.157.1.5 |Metallo-hydrolase/oxidoreductase |Metallo-hydrolase/oxidoreductase |Methyl parathion hydrolase |Methyl parathion hydrolase |Pseudomonas sp. WBC-3 [TaxId: 165468]
d1xpaa1 : (PHE164) (ASN210) [view usage] : a.6.1.2 |Putative DNA-binding domain |Putative DNA-binding domain |DNA repair factor XPA DNA- and RPA-binding domain, C-terminal subdomain |DNA repair factor XPA DNA- and RPA-binding domain, C-terminal subdomain |Human (Homo sapiens) [TaxId: 9606]
d2biva1 : (ALA91) (GLY125) [view usage] : b.34.9.0 |SH3-like barrel |Tudor/PWWP/MBT |automated matches |automated matches |Human (Homo sapiens) [TaxId: 9606]
d3vd5a3 : (GLN573) (GLN623) [view usage] : c.1.8.3 |TIM beta/alpha-barrel |(Trans)glycosidases |beta-glycanases |beta-Galactosidase, domain 3 |Escherichia coli [TaxId: 562]
d2f22a1 : (ASN93) (GLN139) [view usage] : a.213.1.2 |DinB/YfiT-like putative metalloenzymes |DinB/YfiT-like putative metalloenzymes |DinB-like |Hypothetical protein BH3987 |Bacillus halodurans [TaxId: 86665]
d3vb9a_ : (GLU23) (LYS82) [view usage] : e.65.1.1 |VPA0735-like |VPA0735-like |VPA0735-like |Hypothetical protein VPA0735 |Vibrio parahaemolyticus [TaxId: 670]
d2r57a1 : (SER233) (GLY267) [view usage] : b.34.9.0 |SH3-like barrel |Tudor/PWWP/MBT |automated matches |automated matches |Fruit fly (Drosophila melanogaster) [TaxId: 7227]
d1oi1a1 : (ALA91) (GLY125) [view usage] : b.34.9.3 |SH3-like barrel |Tudor/PWWP/MBT |MBT repeat |Scml2 protein |Human (Homo sapiens) [TaxId: 9606]
d1bxma_ : (CYS71) (SER97) [view usage] : a.134.1.1 |Fungal elicitin |Fungal elicitin |Fungal elicitin |beta-cryptogein |Phytophthora cryptogea [TaxId: 4786]
d1g2ff_ : (PRO204) (GLY259) [view usage] : k.12.1.1 |Zinc finger design |Zinc finger design |Zinc finger design |TATA box-binding zinc finger, TATAZF |Mouse (Mus musculus), Zif268 based [TaxId: 10090]
d2vyta1 : (ALA91) (GLY125) [view usage] : b.34.9.3 |SH3-like barrel |Tudor/PWWP/MBT |MBT repeat |Scml2 protein |Human (Homo sapiens) [TaxId: 9606]
d4fl6a3 : (HIS503) (GLY537) [view usage] : b.34.9.0 |SH3-like barrel |Tudor/PWWP/MBT |automated matches |automated matches |Human (Homo sapiens) [TaxId: 9606]
d2bivc1 : (ALA91) (GLY125) [view usage] : b.34.9.0 |SH3-like barrel |Tudor/PWWP/MBT |automated matches |automated matches |Human (Homo sapiens) [TaxId: 9606]
d4axhb1 : (VAL350) (GLY390) [view usage] : d.157.1.0 |Metallo-hydrolase/oxidoreductase |Metallo-hydrolase/oxidoreductase |automated matches |automated matches |Pseudomonas sp. [TaxId: 1007495]
d1dpea_ : (VAL71) (GLY119) [view usage] : c.94.1.1 |Periplasmic binding protein-like II |Periplasmic binding protein-like II |Phosphate binding protein-like |Dipeptide-binding protein |Escherichia coli [TaxId: 562]
d1g2dc_ : (PRO104) (GLY159) [view usage] : k.12.1.1 |Zinc finger design |Zinc finger design |Zinc finger design |TATA box-binding zinc finger, TATAZF |Mouse (Mus musculus), Zif268 based [TaxId: 10090]
d4oera_ : (ASP68) (MET105) [view usage] : c.94.1.1 |Periplasmic binding protein-like II |Periplasmic binding protein-like II |Phosphate binding protein-like |Nickel-binding periplasmic protein NikA |Brucella suis [TaxId: 29461]
d2f22b_ : (ASN93) (HIS142) [view usage] : a.213.1.2 |DinB/YfiT-like putative metalloenzymes |DinB/YfiT-like putative metalloenzymes |DinB-like |Hypothetical protein BH3987 |Bacillus halodurans [TaxId: 86665]
d1oyra2 : (GLU185) (PRO242) [view usage] : d.101.1.1 |Ribonuclease PH domain 2-like |Ribonuclease PH domain 2-like |Ribonuclease PH domain 2-like |Ribonuclease PH, domain 2 |Bacillus subtilis [TaxId: 1423]
d2fjub3 : (THR98) (ASN141) [view usage] : b.55.1.1 |PH domain-like barrel |PH domain-like |Pleckstrin-homology domain (PH domain) |Phospholipase C-beta-2 |Human (Homo sapiens) [TaxId: 9606]
d2p3ya1 : (GLN22) (LYS82) [view usage] : e.65.1.1 |VPA0735-like |VPA0735-like |VPA0735-like |Hypothetical protein VPA0735 |Vibrio parahaemolyticus [TaxId: 670]
d1uiva_ : (ASP70) (ARG95) [view usage] : c.94.1.1 |Periplasmic binding protein-like II |Periplasmic binding protein-like II |Phosphate binding protein-like |Nickel-binding periplasmic protein NikA |Escherichia coli [TaxId: 562]
d1kfia3 : (ASN388) (GLN441) [view usage] : c.84.1.1 |Phosphoglucomutase, first 3 domains |Phosphoglucomutase, first 3 domains |Phosphoglucomutase, first 3 domains |Exocytosis-sensitive phosphoprotein, pp63/parafusin |Ciliate (Paramecium tetraurelia) [TaxId: 5888]
d3j39w_ : (GLY18) (ARG60) [view usage] : i.1.1.1 |Ribosome and ribosomal fragments |Ribosome and ribosomal fragments |Ribosome complexes |Eukaryotic, cytoplasmic (80S ribosome functional complex) |Drosophila melanogaster [TaxId: 7227]
d1dt3a_ : (PHE95) (HIS135) [view usage] : c.69.1.17 |alpha/beta-Hydrolases |alpha/beta-Hydrolases |Fungal lipases |Triacylglycerol lipase |Thermomyces lanuginosus, formerly Humicola lanuginosa [TaxId: 5541]
d1hpzb_ : (THR58) (GLU89) [view usage] : e.8.1.2 |DNA/RNA polymerases |DNA/RNA polymerases |Reverse transcriptase |HIV-1 reverse transcriptase |Human immunodeficiency virus type 1 [TaxId: 11676]
d1dppa_ : (VAL71) (GLY119) [view usage] : c.94.1.1 |Periplasmic binding protein-like II |Periplasmic binding protein-like II |Phosphate binding protein-like |Dipeptide-binding protein |Escherichia coli [TaxId: 562]
d2esnb1 : (LEU54) (ARG90) [view usage] : a.4.5.37 |DNA/RNA-binding 3-helical bundle |"Winged helix" DNA-binding domain |LysR-like transcriptional regulators |Probable LysR-type transcriptional regulator PA0477 |Pseudomonas aeruginosa [TaxId: 287]
d2bivb1 : (ALA91) (GLY125) [view usage] : b.34.9.0 |SH3-like barrel |Tudor/PWWP/MBT |automated matches |automated matches |Human (Homo sapiens) [TaxId: 9606]
d1hnib_ : (PRO55) (GLY93) [view usage] : e.8.1.2 |DNA/RNA polymerases |DNA/RNA polymerases |Reverse transcriptase |HIV-1 reverse transcriptase |Human immunodeficiency virus type 1 [TaxId: 11676]
d1zbdb_ : (GLY123) (LYS156) [view usage] : g.50.1.1 |FYVE/PHD zinc finger |FYVE/PHD zinc finger |FYVE, a phosphatidylinositol-3-phosphate binding domain |Effector domain of rabphilin-3a |Norway rat (Rattus norvegicus) [TaxId: 10116]
d1jyna5 : (GLN573) (GLN625) [view usage] : c.1.8.3 |TIM beta/alpha-barrel |(Trans)glycosidases |beta-glycanases |beta-Galactosidase, domain 3 |Escherichia coli [TaxId: 562]
d3vd3a3 : (GLN573) (GLN625) [view usage] : c.1.8.3 |TIM beta/alpha-barrel |(Trans)glycosidases |beta-glycanases |beta-Galactosidase, domain 3 |Escherichia coli [TaxId: 562]
d2p0ka1 : (ALA86) (GLY120) [view usage] : b.34.9.0 |SH3-like barrel |Tudor/PWWP/MBT |automated matches |automated matches |Human (Homo sapiens) [TaxId: 9606]
d1lria_ : (CYS71) (LEU98) [view usage] : a.134.1.1 |Fungal elicitin |Fungal elicitin |Fungal elicitin |beta-cryptogein |Phytophthora cryptogea [TaxId: 4786]
d3wu2a_ : (PRO56) (GLY138) [view usage] : f.26.1.1 |Bacterial photosystem II reaction centre, L and M subunits |Bacterial photosystem II reaction centre, L and M subunits |Bacterial photosystem II reaction centre, L and M subunits |automated matches |Thermosynechococcus vulcanus [TaxId: 32053]
List of distinct SCOP folds where this concept is used (in one or more of its domains):
e.8, c.1, c.69, c.94, i.1, d.157, f.26, b.55, b.34, a.4, d.101, a.6, c.84, d.18, e.65, a.213, a.134, g.50, k.12