Tableau information
Concept source: d2kzfa_ amino acid (a.a.) range (SER39)(ASN84)
nSSEs in this Concept: 4
String of secondary struct.elems. (SSEs) defining this concept: EEHH
Each SSE's a.a.range: (start resi) (end resi) SSEtype (H=Helix; E=Strand) followed by a numeric SSE ID:
(SER39) (SER44) E1
(ARG48) (LEU57) E2
(THR59) (ALA73) H3
(ALA73) (ASN84) H4
Orientation angles° of SSE-pairs; those in contact shown in bold font
E1
E2 160.2° E2
H3 -52.9° 142.8° H3
H4 -74.2° 122.8° -57.4°
Footnote: Inferred from this concept's usages (listed below) was the angular variance of 1σ = ±13.0° about each orientation angle shown above.
Loci of concept usages (shown as a range of a.a. residue ids) in SCOP(v2.05) domains, along with their brief legend taken from SCOP
d1n3wa_ : (ASN241) (LYS297) [view usage] : c.94.1.1 |Periplasmic binding protein-like II |Periplasmic binding protein-like II |Phosphate binding protein-like |D-maltodextrin-binding protein, MBP |Escherichia coli [TaxId: 562]
d1yf2a2 : (VAL316) (GLY357) [view usage] : d.287.1.2 |DNA methylase specificity domain |DNA methylase specificity domain |Type I restriction modification DNA specificity domain |Bipartite methylase S protein MJ0130 |Methanocaldococcus jannaschii [TaxId: 2190]
d4f18a_ : (GLY1278) (ALA1332) [view usage] : c.94.1.1 |Periplasmic binding protein-like II |Periplasmic binding protein-like II |Phosphate binding protein-like |Phosphate-binding protein |Pseudomonas fluorescens [TaxId: 294]
d2ylna_ : (VAL221) (PHE267) [view usage] : c.94.1.0 |Periplasmic binding protein-like II |Periplasmic binding protein-like II |automated matches |automated matches |Neisseria gonorrhoeae [TaxId: 485]
d4lipd_ : (THR217) (LEU273) [view usage] : c.69.1.18 |alpha/beta-Hydrolases |alpha/beta-Hydrolases |Bacterial lipase |Lipase |Burkholderia cepacia, formerly Pseudomonas cepacia [TaxId: 292]
d1wqla2 : (LYS420) (SER459) [view usage] : d.129.3.3 |TBP-like |Bet v1-like |Ring hydroxylating alpha subunit catalytic domain |Large subunit of cumene dioxygenase cumA1 |Pseudomonas fluorescens [TaxId: 294]
d2fgea3 : (GLU278) (SER341) [view usage] : d.185.1.1 |LuxS/MPP-like metallohydrolase |LuxS/MPP-like metallohydrolase |MPP-like |Presequence protease 1, PREP1 |Thale cress (Arabidopsis thaliana) [TaxId: 3702]
d3h7ma_ : (ALA234) (LEU274) [view usage] : c.94.1.0 |Periplasmic binding protein-like II |Periplasmic binding protein-like II |automated matches |automated matches |Geobacter sulfurreducens [TaxId: 35554]
d2aqxa_ : (SER675) (PHE707) [view usage] : d.143.1.3 |SAICAR synthase-like |SAICAR synthase-like |Inositol polyphosphate kinase (IPK) |automated matches |Mouse (Mus musculus) [TaxId: 10090]
d2ldka_ : (SER4) (ARG39) [view usage] : d.129.3.0 |TBP-like |Bet v1-like |automated matches |automated matches |Arthrobacter aurescens [TaxId: 290340]
d2aqxb_ : (SER675) (PHE707) [view usage] : d.143.1.3 |SAICAR synthase-like |SAICAR synthase-like |Inositol polyphosphate kinase (IPK) |automated matches |Mouse (Mus musculus) [TaxId: 10090]
d1fx3b_ : (PRO133) (SER162) [view usage] : d.33.1.1 |SecB-like |SecB-like |Bacterial protein-export protein SecB |Bacterial protein-export protein SecB |Haemophilus influenzae [TaxId: 727]
d1aqea_ : (GLU7) (HIS60) [view usage] : a.138.1.1 |Multiheme cytochromes |Multiheme cytochromes |Cytochrome c3-like |Cytochrome c3 |Desulfovibrio desulfuricans, different strains [TaxId: 876]
d1hqda_ : (THR217) (LEU273) [view usage] : c.69.1.18 |alpha/beta-Hydrolases |alpha/beta-Hydrolases |Bacterial lipase |Lipase |Burkholderia cepacia, formerly Pseudomonas cepacia [TaxId: 292]
d4f1va_ : (GLY1278) (ASN1331) [view usage] : c.94.1.1 |Periplasmic binding protein-like II |Periplasmic binding protein-like II |Phosphate binding protein-like |Phosphate-binding protein |Pseudomonas fluorescens [TaxId: 216595]
d3m3ta_ : (ASP155) (ASN214) [view usage] : b.47.1.4 |Trypsin-like serine proteases |Trypsin-like serine proteases |Viral cysteine protease of trypsin fold |automated matches |SARS coronavirus [TaxId: 227859]
d2fqmb_ : (PRO111) (ASN153) [view usage] : d.378.1.1 |Phosphoprotein oligomerization domain-like |Phosphoprotein oligomerization domain-like |Phosphoprotein oligomerization domain-like |Phosphoprotein P (M1) |Vesicular stomatitis indiana virus [TaxId: 11277]
d2m7ua_ : (TRP482) (ARG504) [view usage] : d.110.2.0 |Profilin-like |GAF domain-like |automated matches |automated matches |Thermosynechococcus elongatus [TaxId: 197221]
d1dkpa_ : (GLU197) (LEU246) [view usage] : c.60.1.2 |Phosphoglycerate mutase-like |Phosphoglycerate mutase-like |Histidine acid phosphatase |Phytase (myo-inositol-hexakisphosphate-3-phosphohydrolase) |Escherichia coli [TaxId: 562]
d3dedc_ : (GLU342) (GLY378) [view usage] : d.145.1.4 |FAD-binding/transporter-associated domain-like |FAD-binding/transporter-associated domain-like |CorC/HlyC domain-like |Probable hemolysin CV0231 |Chromobacterium violaceum [TaxId: 536]
d2ns9b_ : (HIS4) (PHE41) [view usage] : d.129.3.10 |TBP-like |Bet v1-like |CoxG-like |Hypothetical protein APE2225 |Aeropyrum pernix [TaxId: 56636]
d1dqna_ : (GLY178) (ARG229) [view usage] : c.61.1.1 |PRTase-like |PRTase-like |Phosphoribosyltransferases (PRTases) |Guanine PRTase |Giardia intestinalis [TaxId: 5741]
d2btva_ : (SER190) (ARG245) [view usage] : e.28.1.1 |Reovirus inner layer core protein p3 |Reovirus inner layer core protein p3 |Orbivirus core |BTV vp3 |Bluetongue virus, strain 1 [TaxId: 40051]
d2nn5a1 : (ASP3) (GLN39) [view usage] : d.129.3.5 |TBP-like |Bet v1-like |AHSA1 domain |Hypothetical protein EF2215 |Enterococcus faecalis [TaxId: 1351]
d3skpa_ : (ALA580) (LEU607) [view usage] : c.94.1.2 |Periplasmic binding protein-like II |Periplasmic binding protein-like II |Transferrin |automated matches |Human (Homo sapiens) [TaxId: 9606]
d2a9ca1 : (ARG304) (PRO340) [view usage] : d.176.1.1 |Oxidoreductase molybdopterin-binding domain |Oxidoreductase molybdopterin-binding domain |Oxidoreductase molybdopterin-binding domain |Sulfite oxidase, middle catalytic domain |Chicken (Gallus gallus) [TaxId: 9031]
d1rzta3 : (GLY475) (GLY524) [view usage] : d.218.1.2 |Nucleotidyltransferase |Nucleotidyltransferase |DNA polymerase beta-like |DNA polymerase lambda |Human (Homo sapiens) [TaxId: 9606]
d1a5ia_ : (THR134) (PHE172) [view usage] : b.47.1.2 |Trypsin-like serine proteases |Trypsin-like serine proteases |Eukaryotic proteases |Single chain tissue plasminogen activator |Vampire bat (Desmodus rotundus) [TaxId: 9430]
d1xuva_ : (ASN11) (TRP50) [view usage] : d.129.3.5 |TBP-like |Bet v1-like |AHSA1 domain |Hypothetical protein MM0500 |Methanosarcina mazei [TaxId: 2209]
d3kuea_ : (SER38) (GLY81) [view usage] : d.58.30.1 |Ferredoxin-like |6-hydroxymethyl-7,8-dihydropterin pyrophosphokinase, HPPK |6-hydroxymethyl-7,8-dihydropterin pyrophosphokinase, HPPK |6-hydroxymethyl-7,8-dihydropterin pyrophosphokinase, HPPK |Escherichia coli [TaxId: 562]
d1jssa_ : (ASP53) (ASP96) [view usage] : d.129.3.2 |TBP-like |Bet v1-like |STAR domain |Cholesterol-regulated Start protein 4 (Stard4). |Mouse (Mus musculus) [TaxId: 10090]
d1bdaa_ : (GLU135) (LEU172) [view usage] : b.47.1.2 |Trypsin-like serine proteases |Trypsin-like serine proteases |Eukaryotic proteases |Single chain tissue plasminogen activator |Human (Homo sapiens) [TaxId: 9606]
d2vtuj1 : (GLN182) (ASN253) [view usage] : d.85.1.1 |RNA bacteriophage capsid protein |RNA bacteriophage capsid protein |RNA bacteriophage capsid protein |MS2 virus coat protein |Bacteriophage MS2 [TaxId: 12022]
d1bmsa_ : (GLN54) (ALA124) [view usage] : d.85.1.1 |RNA bacteriophage capsid protein |RNA bacteriophage capsid protein |RNA bacteriophage capsid protein |MS2 virus coat protein |Bacteriophage MS2 [TaxId: 12022]
d2onkj_ : (ILE205) (GLY244) [view usage] : c.94.1.1 |Periplasmic binding protein-like II |Periplasmic binding protein-like II |Phosphate binding protein-like |Molybdate-binding protein, ModA |Archaeoglobus fulgidus [TaxId: 2234]
d3vb9b_ : (GLN22) (LYS82) [view usage] : e.65.1.1 |VPA0735-like |VPA0735-like |VPA0735-like |Hypothetical protein VPA0735 |Vibrio parahaemolyticus [TaxId: 670]
d1ys1x_ : (THR217) (LEU273) [view usage] : c.69.1.18 |alpha/beta-Hydrolases |alpha/beta-Hydrolases |Bacterial lipase |automated matches |Burkholderia cepacia [TaxId: 292]
d2q9ta_ : (GLY278) (ALA332) [view usage] : c.94.1.1 |Periplasmic binding protein-like II |Periplasmic binding protein-like II |Phosphate binding protein-like |Phosphate-binding protein |Pseudomonas fluorescens [TaxId: 294]
d2oc6b_ : (ILE52) (GLY82) [view usage] : d.198.4.1 |Secretion chaperone-like |YdhG-like |YdhG-like |Uncharacterized protein YdhG |Bacillus subtilis [TaxId: 1423]
List of distinct SCOP folds where this concept is used (in one or more of its domains):
c.69, c.94, d.58, b.47, d.129, d.185, c.60, d.176, d.110, d.143, c.61, d.145, d.287, a.138, d.85, d.218, d.33, d.52, d.198, e.65,
d.378, e.28