Tableau information
Concept source: d1yx3a_ amino acid (a.a.) range (MET1)(GLU55)
nSSEs in this Concept: 4
String of secondary struct.elems. (SSEs) defining this concept: EEHH
Each SSE's a.a.range: (start resi) (end resi) SSEtype (H=Helix; E=Strand) followed by a numeric SSE ID:
(MET1) (GLU6) E1
(LYS10) (ASP15) E2
(PRO28) (ASN39) H3
(THR43) (GLU55) H4
Orientation angles° of SSE-pairs; those in contact shown in bold font
E1
E2 149.3° E2
H3 113.6° -60.8° H3
H4 -121.6° 71.8° 124.8°
Footnote: Inferred from this concept's usages (listed below) was the angular variance of 1σ = ±13.0° about each orientation angle shown above.
Loci of concept usages (shown as a range of a.a. residue ids) in SCOP(v2.05) domains, along with their brief legend taken from SCOP
d1f9nd1 : (HIS49) (ARG78) [view usage] : a.4.5.3 |DNA/RNA-binding 3-helical bundle |"Winged helix" DNA-binding domain |Arginine repressor (ArgR), N-terminal DNA-binding domain |Arginine repressor (ArgR), N-terminal DNA-binding domain |Bacillus subtilis [TaxId: 1423]
d3kzha_ : (PRO97) (LYS130) [view usage] : c.72.1.0 |Ribokinase-like |Ribokinase-like |automated matches |automated matches |Clostridium perfringens [TaxId: 1502]
d2jrta_ : (ARG10) (ASP57) [view usage] : a.4.12.0 |DNA/RNA-binding 3-helical bundle |TrpR-like |automated matches |automated matches |Rhodobacter sphaeroides [TaxId: 1063]
d1uk0a1 : (ILE79) (LYS137) [view usage] : a.41.1.1 |Domain of poly(ADP-ribose) polymerase |Domain of poly(ADP-ribose) polymerase |Domain of poly(ADP-ribose) polymerase |Domain of poly(ADP-ribose) polymerase |Human (Homo sapiens) [TaxId: 9606]
d1ji8a_ : (GLY7) (PHE66) [view usage] : d.203.1.1 |DsrC, the gamma subunit of dissimilatory sulfite reductase |DsrC, the gamma subunit of dissimilatory sulfite reductase |DsrC, the gamma subunit of dissimilatory sulfite reductase |DsrC, the gamma subunit of dissimilatory sulfite reductase |Pyrobaculum aerophilum [TaxId: 13773]
d2gz4a1 : (ALA9) (CYS71) [view usage] : a.211.1.1 |HD-domain/PDEase-like |HD-domain/PDEase-like |HD domain |Hypothetical protein Atu1052 |Agrobacterium tumefaciens [TaxId: 358]
d1e15a3 : (ARG294) (LYS335) [view usage] : d.26.3.1 |FKBP-like |Chitinase insertion domain |Chitinase insertion domain |Chitinase B |Serratia marcescens [TaxId: 615]
d4h24d_ : (PHE331) (GLU373) [view usage] : a.104.1.1 |Cytochrome P450 |Cytochrome P450 |Cytochrome P450 |Cytochrome P450 bm-3 |Bacillus megaterium [TaxId: 1404]
d3dd6a2 : (VAL199) (ILE244) [view usage] : d.101.1.1 |Ribonuclease PH domain 2-like |Ribonuclease PH domain 2-like |Ribonuclease PH domain 2-like |Ribonuclease PH, domain 2 |Bacillus anthracis
d2gz4d_ : (ALA9) (PRO72) [view usage] : a.211.1.1 |HD-domain/PDEase-like |HD-domain/PDEase-like |HD domain |Hypothetical protein Atu1052 |Agrobacterium tumefaciens [TaxId: 358]
d3ktna_ : (GLY86) (ASP120) [view usage] : c.72.1.0 |Ribokinase-like |Ribokinase-like |automated matches |automated matches |Enterococcus faecalis [TaxId: 1351]
d1l9ma4 : (ILE422) (LYS460) [view usage] : d.3.1.4 |Cysteine proteinases |Cysteine proteinases |Transglutaminase core |Transglutaminase catalytic domain |Human (Homo sapiens), TGase E3 [TaxId: 9606]
d1a26a1 : (ILE740) (LYS796) [view usage] : a.41.1.1 |Domain of poly(ADP-ribose) polymerase |Domain of poly(ADP-ribose) polymerase |Domain of poly(ADP-ribose) polymerase |Domain of poly(ADP-ribose) polymerase |Chicken (Gallus gallus) [TaxId: 9031]
d3ouqa2 : (PRO86) (ASN118) [view usage] : a.138.1.0 |Multiheme cytochromes |Multiheme cytochromes |automated matches |automated matches |Geobacter sulfurreducens [TaxId: 35554]
d4k8ub_ : (PRO381) (GLY425) [view usage] : b.8.1.0 |TRAF domain-like |TRAF domain-like |automated matches |automated matches |Human (Homo sapiens) [TaxId: 9606]
d1ts9a_ : (GLY60) (GLY99) [view usage] : b.137.1.1 |Rof/RNase P subunit-like |Rof/RNase P subunit-like |RNase P subunit p29-like |Hypothetical protein AF1917 |Archaeoglobus fulgidus [TaxId: 2234]
d1flcb_ : (LEU25) (ASN124) [view usage] : h.3.1.1 |Stalk segment of viral fusion proteins |Influenza hemagglutinin (stalk) |Influenza hemagglutinin (stalk) |Influenza hemagglutinin (stalk) |Influenza C virus [TaxId: 11552]
d1udxa3 : (VAL344) (ALA376) [view usage] : d.242.1.1 |Obg GTP-binding protein C-terminal domain |Obg GTP-binding protein C-terminal domain |Obg GTP-binding protein C-terminal domain |Obg GTP-binding protein C-terminal domain |Thermus thermophilus [TaxId: 274]
d1n83a_ : (ASN377) (LEU428) [view usage] : a.123.1.1 |Nuclear receptor ligand-binding domain |Nuclear receptor ligand-binding domain |Nuclear receptor ligand-binding domain |Orphan nuclear receptor ROR-alpha |Human (Homo sapiens) [TaxId: 9606]
d2r86a2 : (PRO180) (GLU220) [view usage] : d.142.1.9 |ATP-grasp |Glutathione synthetase ATP-binding domain-like |PurP ATP-binding domain-like |5-formaminoimidazole-4-carboxamide ribonucleotide synthetase PurP |Pyrococcus furiosus [TaxId: 2261]
d1ex0a4 : (LYS462) (TYR500) [view usage] : d.3.1.4 |Cysteine proteinases |Cysteine proteinases |Transglutaminase core |Transglutaminase catalytic domain |Human (Homo sapiens), blood isozyme [TaxId: 9606]
d1rwja_ : (LYS7) (PHE40) [view usage] : a.138.1.1 |Multiheme cytochromes |Multiheme cytochromes |Cytochrome c3-like |Cytochrome c7 (cytochrome c551.5, PpcA) |Geobacter sulfurreducens, GSU1996 [TaxId: 35554]
d2yhea1 : (VAL350) (GLU399) [view usage] : d.157.1.0 |Metallo-hydrolase/oxidoreductase |Metallo-hydrolase/oxidoreductase |automated matches |automated matches |Pseudomonas sp. [TaxId: 1007495]
d4l6sb1 : (ILE740) (LYS796) [view usage] : a.41.1.0 |Domain of poly(ADP-ribose) polymerase |Domain of poly(ADP-ribose) polymerase |automated matches |automated matches |Human (Homo sapiens) [TaxId: 9606]
d1vq0a1 : (MET1) (VAL39) [view usage] : d.193.1.1 |Hsp33 domain |Hsp33 domain |Hsp33 domain |Heat shock protein 33, Hsp33 |Thermotoga maritima [TaxId: 2336]
d1smjd_ : (PRO329) (GLU373) [view usage] : a.104.1.1 |Cytochrome P450 |Cytochrome P450 |Cytochrome P450 |Cytochrome P450 bm-3 |Bacillus megaterium [TaxId: 1404]
List of distinct SCOP folds where this concept is used (in one or more of its domains):
a.104, d.157, a.211, c.72, d.3, a.123, d.142, a.4, h.3, d.193, a.138, d.26, d.101, b.8, b.137, a.41, d.203, d.242