Tableau information
Concept source: d1rqma_ amino acid (a.a.) range (PRO73)(GLN105)
nSSEs in this Concept: 4
String of secondary struct.elems. (SSEs) defining this concept: EEHH
Each SSE's a.a.range: (start resi) (end resi) SSEtype (H=Helix; E=Strand) followed by a numeric SSE ID:
(PRO73) (LEU77) E1
(VAL84) (GLY89) E2
(PRO92) (LEU100) H3
(LEU100) (GLN105) H4
Orientation angles° of SSE-pairs; those in contact shown in bold font
E1
E2 165.2° E2
H3 -26.4° 166.5° H3
H4 39.6° -130.7° -62.8°
Footnote: Inferred from this concept's usages (listed below) was the angular variance of 1σ = ±13.0° about each orientation angle shown above.
Loci of concept usages (shown as a range of a.a. residue ids) in SCOP(v2.05) domains, along with their brief legend taken from SCOP
d2bkra_ : (MET1) (ALA40) [view usage] : d.3.1.7 |Cysteine proteinases |Cysteine proteinases |Adenain-like |automated matches |Human (Homo sapiens) [TaxId: 9606]
d1j9sa2 : (LYS174) (LEU213) [view usage] : b.6.1.3 |Cupredoxin-like |Cupredoxins |Multidomain cupredoxins |Nitrite reductase, NIR |Alcaligenes faecalis, strain s-6 [TaxId: 511]
d1g9xa_ : (HIS222) (ILE255) [view usage] : c.37.1.12 |P-loop containing nucleoside triphosphate hydrolases |P-loop containing nucleoside triphosphate hydrolases |ABC transporter ATPase domain-like |MJ1267 |Methanococcus jannaschii [TaxId: 2190]
d2cfza2 : (ALA283) (ALA337) [view usage] : d.157.1.13 |Metallo-hydrolase/oxidoreductase |Metallo-hydrolase/oxidoreductase |Alkylsulfatase-like |Alkylsulfatase SdsA1 |Pseudomonas aeruginosa [TaxId: 287]
d2q85a1 : (ALA134) (ARG170) [view usage] : d.145.1.2 |FAD-binding/transporter-associated domain-like |FAD-binding/transporter-associated domain-like |Uridine diphospho-N-Acetylenolpyruvylglucosamine reductase (MurB), N-terminal domain |Uridine diphospho-N-Acetylenolpyruvylglucosamine reductase (MurB), N-terminal domain |Escherichia coli [TaxId: 562]
d4av7a1 : (SER294) (THR348) [view usage] : d.157.1.0 |Metallo-hydrolase/oxidoreductase |Metallo-hydrolase/oxidoreductase |automated matches |automated matches |Pseudomonas sp. [TaxId: 1007495]
d1yreb_ : (GLY151) (THR194) [view usage] : d.108.1.1 |Acyl-CoA N-acyltransferases (Nat) |Acyl-CoA N-acyltransferases (Nat) |N-acetyl transferase, NAT |automated matches |Pseudomonas aeruginosa [TaxId: 208964]
d1mzwa_ : (PRO11) (THR48) [view usage] : b.62.1.1 |Cyclophilin-like |Cyclophilin-like |Cyclophilin (peptidylprolyl isomerase) |Cyclophilin (eukaryotic) |Human (Homo sapiens), U4/U6 snRNP-specific cyclophilin snucyp-20 [TaxId: 9606]
d1hyia_ : (ARG24) (ASP62) [view usage] : g.50.1.1 |FYVE/PHD zinc finger |FYVE/PHD zinc finger |FYVE, a phosphatidylinositol-3-phosphate binding domain |Eea1 |Human (Homo sapiens) [TaxId: 9606]
d4nmwa_ : (ILE4) (PHE40) [view usage] : c.69.1.26 |alpha/beta-Hydrolases |alpha/beta-Hydrolases |Biotin biosynthesis protein BioH |automated matches |Salmonella enterica [TaxId: 99287]
d4i2ta_ : (PRO72) (GLY104) [view usage] : c.47.1.0 |Thioredoxin fold |Thioredoxin-like |automated matches |automated matches |Chlorella sorokiniana [TaxId: 3076]
d2vx2e_ : (PRO47) (LYS92) [view usage] : c.14.1.0 |ClpP/crotonase |ClpP/crotonase |automated matches |automated matches |Human (Homo sapiens) [TaxId: 9606]
d3meda1 : (TYR232) (PRO272) [view usage] : e.8.1.2 |DNA/RNA polymerases |DNA/RNA polymerases |Reverse transcriptase |automated matches |Hiv-1 m:b_hxb2r [TaxId: 11706]
d1gera3 : (HIS385) (THR435) [view usage] : d.87.1.1 |CO dehydrogenase flavoprotein C-domain-like |FAD/NAD-linked reductases, dimerisation (C-terminal) domain |FAD/NAD-linked reductases, dimerisation (C-terminal) domain |Glutathione reductase |Escherichia coli [TaxId: 562]
d1ln0b_ : (GLY4) (GLY53) [view usage] : d.226.1.1 |GIY-YIG endonuclease |GIY-YIG endonuclease |GIY-YIG endonuclease |Homing endonuclease I-TevI |Bacteriophage T4 [TaxId: 10665]
d2bitx1 : (PRO4) (GLY42) [view usage] : b.62.1.1 |Cyclophilin-like |Cyclophilin-like |Cyclophilin (peptidylprolyl isomerase) |Mitochondrial peptidyl-prolyl cis-trans isomerase, cyclophilin F |Human (Homo sapiens) [TaxId: 9606]
d1kcba2 : (LYS174) (LEU213) [view usage] : b.6.1.3 |Cupredoxin-like |Cupredoxins |Multidomain cupredoxins |Nitrite reductase, NIR |Achromobacter cycloclastes [TaxId: 223]
d1t3qc2 : (ILE62) (CYS89) [view usage] : d.145.1.3 |FAD-binding/transporter-associated domain-like |FAD-binding/transporter-associated domain-like |CO dehydrogenase flavoprotein N-terminal domain-like |Quinoline 2-oxidoreductase medium subunit QorM |Pseudomonas putida [TaxId: 303]
d1ln0a_ : (GLY4) (LYS51) [view usage] : d.226.1.1 |GIY-YIG endonuclease |GIY-YIG endonuclease |GIY-YIG endonuclease |Homing endonuclease I-TevI |Bacteriophage T4 [TaxId: 10665]
d2zd1a1 : (TYR232) (PRO272) [view usage] : e.8.1.2 |DNA/RNA polymerases |DNA/RNA polymerases |Reverse transcriptase |HIV-1 reverse transcriptase |Human immunodeficiency virus type 1 [TaxId: 11676]
d2vx2h_ : (PRO47) (LYS92) [view usage] : c.14.1.0 |ClpP/crotonase |ClpP/crotonase |automated matches |automated matches |Human (Homo sapiens) [TaxId: 9606]
d2q3la1 : (GLY7) (LEU45) [view usage] : c.13.2.2 |SpoIIaa-like |SpoIIaa-like |Sfri0576-like |Uncharacterized protein Shew3102 |Shewanella loihica [TaxId: 359303]
d1gaja_ : (HIS222) (ILE253) [view usage] : c.37.1.12 |P-loop containing nucleoside triphosphate hydrolases |P-loop containing nucleoside triphosphate hydrolases |ABC transporter ATPase domain-like |MJ1267 |Methanococcus jannaschii [TaxId: 2190]
d2df4a1 : (LEU436) (LEU485) [view usage] : c.117.1.1 |Amidase signature (AS) enzymes |Amidase signature (AS) enzymes |Amidase signature (AS) enzymes |Glutamyl-tRNA(Gln) amidotransferase subunit A |Staphylococcus aureus [TaxId: 1280]
d4axhb1 : (SER294) (THR348) [view usage] : d.157.1.0 |Metallo-hydrolase/oxidoreductase |Metallo-hydrolase/oxidoreductase |automated matches |automated matches |Pseudomonas sp. [TaxId: 1007495]
d1ffuc2 : (GLY62) (ALA89) [view usage] : d.145.1.3 |FAD-binding/transporter-associated domain-like |FAD-binding/transporter-associated domain-like |CO dehydrogenase flavoprotein N-terminal domain-like |Carbon monoxide (CO) dehydrogenase flavoprotein, N-terminal domain |Hydrogenophaga pseudoflava [TaxId: 47421]
d2vupa_ : (THR132) (SER165) [view usage] : c.47.1.0 |Thioredoxin fold |Thioredoxin-like |automated matches |automated matches |Trypanosome (Trypanosoma brucei) [TaxId: 5691]
d2cg2a2 : (ALA283) (ALA337) [view usage] : d.157.1.13 |Metallo-hydrolase/oxidoreductase |Metallo-hydrolase/oxidoreductase |Alkylsulfatase-like |Alkylsulfatase SdsA1 |Pseudomonas aeruginosa [TaxId: 287]
d2vx2a_ : (PRO47) (LYS92) [view usage] : c.14.1.0 |ClpP/crotonase |ClpP/crotonase |automated matches |automated matches |Human (Homo sapiens) [TaxId: 9606]
d4dalg_ : (HIS343) (ARG376) [view usage] : c.82.1.0 |ALDH-like |ALDH-like |automated matches |automated matches |Sinorhizobium meliloti [TaxId: 266834]
d1mk0a_ : (GLY4) (HIS52) [view usage] : d.226.1.1 |GIY-YIG endonuclease |GIY-YIG endonuclease |GIY-YIG endonuclease |Homing endonuclease I-TevI |Bacteriophage T4 [TaxId: 10665]
d1xwha_ : (GLU307) (ALA343) [view usage] : g.50.1.0 |FYVE/PHD zinc finger |FYVE/PHD zinc finger |automated matches |automated matches |Human (Homo sapiens) [TaxId: 9606]
d1rqma_ : (PRO73) (GLN105) [view usage] : c.47.1.1 |Thioredoxin fold |Thioredoxin-like |Thioltransferase |Thioredoxin |Alicyclobacillus acidocaldarius, formerly Bacillus acidocaldarius [TaxId: 405212]
d2hqja_ : (PRO4) (THR41) [view usage] : b.62.1.1 |Cyclophilin-like |Cyclophilin-like |Cyclophilin (peptidylprolyl isomerase) |automated matches |Leishmania major [TaxId: 5664]
d1grha_ : (ARG413) (THR463) [view usage] : i.12.1.1 |Proteins of incorrect, partial and unknown sequence |Proteins of incorrect, partial and unknown sequence |Proteins of incorrect, partial and unknown sequence |Glutathione reductase |Human (Homo sapiens) [TaxId: 9606]
d1lafe_ : (SER92) (GLY134) [view usage] : c.94.1.1 |Periplasmic binding protein-like II |Periplasmic binding protein-like II |Phosphate binding protein-like |Lysine-,arginine-,ornithine-binding (LAO) protein |Salmonella typhimurium [TaxId: 90371]
d2vx2i_ : (PRO47) (LYS92) [view usage] : c.14.1.0 |ClpP/crotonase |ClpP/crotonase |automated matches |automated matches |Human (Homo sapiens) [TaxId: 9606]
d2ynga1 : (GLY231) (PRO272) [view usage] : e.8.1.2 |DNA/RNA polymerases |DNA/RNA polymerases |Reverse transcriptase |automated matches |Hiv-1 m:b_hxb2r [TaxId: 11706]
d1xtoa_ : (SER40) (PRO72) [view usage] : d.157.1.6 |Metallo-hydrolase/oxidoreductase |Metallo-hydrolase/oxidoreductase |Coenzyme PQQ synthesis protein B, PqqB |Coenzyme PQQ synthesis protein B, PqqB |Pseudomonas putida [TaxId: 303]
d2vx2g_ : (PRO47) (LYS92) [view usage] : c.14.1.0 |ClpP/crotonase |ClpP/crotonase |automated matches |automated matches |Human (Homo sapiens) [TaxId: 9606]
d4gnia1 : (THR49) (ASN71) [view usage] : c.55.1.0 |Ribonuclease H-like motif |Actin-like ATPase domain |automated matches |automated matches |Chaetomium thermophilum [TaxId: 759272]
d1v9wa_ : (PRO101) (GLU129) [view usage] : c.47.1.16 |Thioredoxin fold |Thioredoxin-like |Txnl5-like |Putative 42-9-9 protein (thioredoxin containing protein Txnl5) |Mouse (Mus musculus) [TaxId: 10090]
d1g6ha_ : (HIS222) (ILE255) [view usage] : c.37.1.12 |P-loop containing nucleoside triphosphate hydrolases |P-loop containing nucleoside triphosphate hydrolases |ABC transporter ATPase domain-like |MJ1267 |Methanococcus jannaschii [TaxId: 2190]
d4o98b_ : (GLN86) (ASP133) [view usage] : d.157.1.0 |Metallo-hydrolase/oxidoreductase |Metallo-hydrolase/oxidoreductase |automated matches |automated matches |Pseudomonas oleovorans [TaxId: 301]
List of distinct SCOP folds where this concept is used (in one or more of its domains):
e.8, c.69, c.94, c.82, c.117, d.157, c.14, c.37, c.47, c.55, d.3, b.6, c.13, d.108, b.62, d.87, d.145, i.12, g.50, d.226