Tableau information
Concept source: d2aeha3 amino acid (a.a.) range (MET33)(GLY84)
nSSEs in this Concept: 4
String of secondary struct.elems. (SSEs) defining this concept: EEHH
Each SSE's a.a.range: (start resi) (end resi) SSEtype (H=Helix; E=Strand) followed by a numeric SSE ID:
(MET33) (TYR42) E1
(TRP52) (ASP60) E2
(VAL64) (LYS76) H3
(ASN79) (GLY84) H4
Orientation angles° of SSE-pairs; those in contact shown in bold font
E1
E2 150.6° E2
H3 -55.8° 138.5° H3
H4 99.7° -85.8° 129.3°
Footnote: Inferred from this concept's usages (listed below) was the angular variance of 1σ = ±12.7° about each orientation angle shown above.
Loci of concept usages (shown as a range of a.a. residue ids) in SCOP(v2.05) domains, along with their brief legend taken from SCOP
d1l5aa2 : (PHE364) (ALA420) [view usage] : c.43.1.2 |CoA-dependent acyltransferases |CoA-dependent acyltransferases |NRPS condensation domain (amide synthase) |VibH |Vibrio cholerae [TaxId: 666]
d3k5la2 : (LYS615) (GLY676) [view usage] : e.8.1.1 |DNA/RNA polymerases |DNA/RNA polymerases |DNA polymerase I |automated matches |Escherichia coli [TaxId: 562]
d3zdtb1 : (ARG35) (GLY84) [view usage] : d.15.1.0 |beta-Grasp (ubiquitin-like) |Ubiquitin-like |automated matches |automated matches |Chicken (Gallus gallus) [TaxId: 9031]
d1vyna_ : (GLU70) (LEU97) [view usage] : b.34.14.1 |SH3-like barrel |PAZ domain |PAZ domain |Argonaute 2 |Fruit fly (Drosophila melanogaster) [TaxId: 7227]
d1t3ud_ : (ASN5) (ARG93) [view usage] : d.244.1.1 |Cell division protein ZapA-like |Cell division protein ZapA-like |Cell division protein ZapA-like |ZapA homologue PA5227 |Pseudomonas aeruginosa [TaxId: 287]
d1wywa_ : (GLY253) (LYS330) [view usage] : c.18.1.2 |Uracil-DNA glycosylase-like |Uracil-DNA glycosylase-like |Mug-like |G/T mismatch-specific thymine DNA glycosylase |Human (Homo sapiens) [TaxId: 9606]
d1z2ma2 : (LEU82) (TRP123) [view usage] : d.15.1.1 |beta-Grasp (ubiquitin-like) |Ubiquitin-like |Ubiquitin-related |Interferon-induced 15 kDa protein |Human (Homo sapiens) [TaxId: 9606]
d1jala2 : (LEU279) (LYS314) [view usage] : d.15.10.2 |beta-Grasp (ubiquitin-like) |TGS-like |G domain-linked domain |YchF GTP-binding protein, C-terminal domain |Haemophilus influenzae [TaxId: 727]
d2ohfa2 : (LEU305) (GLY341) [view usage] : d.15.10.0 |beta-Grasp (ubiquitin-like) |TGS-like |automated matches |automated matches |Human (Homo sapiens) [TaxId: 9606]
d1h4ra3 : (PHE22) (PHE62) [view usage] : d.15.1.4 |beta-Grasp (ubiquitin-like) |Ubiquitin-like |First domain of FERM |Merlin |Human (Homo sapiens) [TaxId: 9606]
d2o61b2 : (GLY119) (MET205) [view usage] : b.2.5.3 |Common fold of diphtheria toxin/transcription factors/cytochrome f |p53-like transcription factors |Rel/Dorsal transcription factors, DNA-binding domain |p50 subunit of NF-kappa B (NFKB), N-terminal domain |Human (Homo sapiens) [TaxId: 9606]
d1wiaa_ : (ILE163) (GLN199) [view usage] : d.15.1.1 |beta-Grasp (ubiquitin-like) |Ubiquitin-like |Ubiquitin-related |Ubiquitin-like protein bab25500 (2010008E23Rik) |Mouse (Mus musculus) [TaxId: 10090]
d1yk9a_ : (GLY350) (THR380) [view usage] : d.58.29.0 |Ferredoxin-like |Nucleotide cyclase |automated matches |automated matches |Mycobacterium tuberculosis
d1ts4a2 : (PRO101) (THR150) [view usage] : d.15.6.1 |beta-Grasp (ubiquitin-like) |Superantigen toxins, C-terminal domain |Superantigen toxins, C-terminal domain |Toxic shock syndrome toxin-1 (TSST-1) |Staphylococcus aureus [TaxId: 1280]
d2fsja1 : (HIS236) (VAL277) [view usage] : c.55.1.12 |Ribonuclease H-like motif |Actin-like ATPase domain |Ta0583-like |Hypothetical protein Ta0583 |Thermoplasma acidophilum [TaxId: 2303]
d3j38e_ : (LYS7) (ARG68) [view usage] : i.1.1.1 |Ribosome and ribosomal fragments |Ribosome and ribosomal fragments |Ribosome complexes |Eukaryotic, cytoplasmic (80S ribosome functional complex) |Drosophila melanogaster [TaxId: 7227]
d1fiqb2 : (ALA289) (THR324) [view usage] : d.145.1.3 |FAD-binding/transporter-associated domain-like |FAD-binding/transporter-associated domain-like |CO dehydrogenase flavoprotein N-terminal domain-like |Xanthine oxidase, domain 3 (?) |Cow (Bos taurus) [TaxId: 9913]
d1mb1a_ : (THR62) (PHE100) [view usage] : d.34.1.1 |DNA-binding domain of Mlu1-box binding protein MBP1 |DNA-binding domain of Mlu1-box binding protein MBP1 |DNA-binding domain of Mlu1-box binding protein MBP1 |DNA-binding domain of Mlu1-box binding protein MBP1 |Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
d2ab0a1 : (ARG143) (VAL186) [view usage] : c.23.16.2 |Flavodoxin-like |Class I glutamine amidotransferase-like |DJ-1/PfpI |Protein ThiJ (YajL) |Escherichia coli [TaxId: 562]
d4c8ib_ : (ARG4) (PHE63) [view usage] : d.79.5.0 |Bacillus chorismate mutase-like |IpsF-like |automated matches |automated matches |Burkholderia cenocepacia [TaxId: 216591]
d1gc6a3 : (MET1) (GLY46) [view usage] : d.15.1.4 |beta-Grasp (ubiquitin-like) |Ubiquitin-like |First domain of FERM |Radixin |Mouse (Mus musculus) [TaxId: 10090]
d1dwua_ : (LYS148) (LYS197) [view usage] : e.24.1.1 |Ribosomal protein L1 |Ribosomal protein L1 |Ribosomal protein L1 |Ribosomal protein L1 |Methanococcus thermolithotrophicus [TaxId: 2186]
d3eubk1 : (ALA289) (GLU325) [view usage] : d.145.1.3 |FAD-binding/transporter-associated domain-like |FAD-binding/transporter-associated domain-like |CO dehydrogenase flavoprotein N-terminal domain-like |automated matches |Cow (Bos taurus) [TaxId: 9913]
d1t3ub_ : (ASN5) (ASP92) [view usage] : d.244.1.1 |Cell division protein ZapA-like |Cell division protein ZapA-like |Cell division protein ZapA-like |ZapA homologue PA5227 |Pseudomonas aeruginosa [TaxId: 287]
d3qtpa2 : (VAL145) (ASN204) [view usage] : c.1.11.0 |TIM beta/alpha-barrel |Enolase C-terminal domain-like |automated matches |automated matches |Entamoeba (Entamoeba histolytica) [TaxId: 5759]
d4ny0a1 : (ARG35) (GLY84) [view usage] : d.15.1.0 |beta-Grasp (ubiquitin-like) |Ubiquitin-like |automated matches |automated matches |Human (Homo sapiens) [TaxId: 9606]
d4hhla_ : (ASN247) (GLY279) [view usage] : c.1.15.3 |TIM beta/alpha-barrel |Xylose isomerase-like |Xylose isomerase |D-xylose isomerase |Streptomyces sp. [TaxId: 253732]
d2d10a3 : (ASN6) (PHE44) [view usage] : d.15.1.4 |beta-Grasp (ubiquitin-like) |Ubiquitin-like |First domain of FERM |Radixin |Mouse (Mus musculus) [TaxId: 10090]
d1gd5a_ : (GLN24) (ASN68) [view usage] : d.189.1.1 |PX domain |PX domain |PX domain |p47phox NADPH oxidase |Human (Homo sapiens) [TaxId: 9606]
d2dbya2 : (LEU284) (GLY320) [view usage] : d.15.10.0 |beta-Grasp (ubiquitin-like) |TGS-like |automated matches |automated matches |Thermus thermophilus HB8 [TaxId: 300852]
d2dwqa2 : (LEU284) (PHE321) [view usage] : d.15.10.0 |beta-Grasp (ubiquitin-like) |TGS-like |automated matches |automated matches |Thermus thermophilus HB8 [TaxId: 300852]
d1tgoa2 : (TYR594) (TYR653) [view usage] : e.8.1.1 |DNA/RNA polymerases |DNA/RNA polymerases |DNA polymerase I |Family B DNA polymerase |Thermococcus gorgonarius [TaxId: 71997]
d2btva_ : (SER89) (SER142) [view usage] : e.28.1.1 |Reovirus inner layer core protein p3 |Reovirus inner layer core protein p3 |Orbivirus core |BTV vp3 |Bluetongue virus, strain 1 [TaxId: 40051]
d4hhlb_ : (ASN247) (GLY279) [view usage] : c.1.15.3 |TIM beta/alpha-barrel |Xylose isomerase-like |Xylose isomerase |D-xylose isomerase |Streptomyces sp. [TaxId: 253732]
d1xlma_ : (ASN246) (GLY277) [view usage] : c.1.15.3 |TIM beta/alpha-barrel |Xylose isomerase-like |Xylose isomerase |D-xylose isomerase |Arthrobacter, strain b3728 [TaxId: 1663]
d2vwja2 : (TYR594) (TYR653) [view usage] : e.8.1.1 |DNA/RNA polymerases |DNA/RNA polymerases |DNA polymerase I |automated matches |Thermococcus gorgonarius [TaxId: 71997]
d1qf6a2 : (PRO2) (CYS35) [view usage] : d.15.10.1 |beta-Grasp (ubiquitin-like) |TGS-like |TGS domain |Threonyl-tRNA synthetase (ThrRS), N-terminal 'additional' domain |Escherichia coli [TaxId: 562]
d1ni5a3 : (GLY364) (THR393) [view usage] : b.153.1.2 |PheT/TilS domain |PheT/TilS domain |tRNA-Ile-lysidine synthetase, TilS, C-terminal domain |tRNA-Ile-lysidine synthetase, TilS, C-terminal domain |Escherichia coli [TaxId: 562]
d3u5cs_ : (HIS13) (ASP51) [view usage] : i.1.1.1 |Ribosome and ribosomal fragments |Ribosome and ribosomal fragments |Ribosome complexes |Eukaryotic, cytoplasmic (80S ribosome functional complex) |Saccharomyces cerevisiae [TaxId: 559292]
d1wz7b_ : (HIS3) (PRO48) [view usage] : d.330.1.1 |ERH-like |ERH-like |ERH-like |automated matches |Mouse (Mus musculus) [TaxId: 10090]
d2xzmm_ : (ILE14) (LYS51) [view usage] : i.1.1.3 |Ribosome and ribosomal fragments |Ribosome and ribosomal fragments |Small subunit |Eukaryotic, cytoplasmic (40S subunit) |Tetrahymena thermophila [TaxId: 5911]
d1w2ea_ : (ASN5) (ALA94) [view usage] : d.244.1.1 |Cell division protein ZapA-like |Cell division protein ZapA-like |Cell division protein ZapA-like |ZapA homologue PA5227 |Pseudomonas aeruginosa [TaxId: 287]
d2wnib_ : (ARG190) (ALA228) [view usage] : c.60.1.0 |Phosphoglycerate mutase-like |Phosphoglycerate mutase-like |automated matches |automated matches |Klebsiella pneumoniae [TaxId: 573]
d1t3ua_ : (THR6) (ALA96) [view usage] : d.244.1.1 |Cell division protein ZapA-like |Cell division protein ZapA-like |Cell division protein ZapA-like |ZapA homologue PA5227 |Pseudomonas aeruginosa [TaxId: 287]
d4nfza_ : (TYR144) (SER194) [view usage] : c.52.1.34 |Restriction endonuclease-like |Restriction endonuclease-like |PA N-terminal domain |PA N-terminal domain |Influenza A virus [TaxId: 93838]
d2io2b_ : (LYS23) (ARG63) [view usage] : d.15.1.1 |beta-Grasp (ubiquitin-like) |Ubiquitin-like |Ubiquitin-related |SUMO-1 (smt3 homologue) |Human (Homo sapiens) [TaxId: 9606]
d2aeha3 : (MET33) (GLY84) [view usage] : d.15.1.4 |beta-Grasp (ubiquitin-like) |Ubiquitin-like |First domain of FERM |Focal adhesion kinase 1 |Chicken (Gallus gallus) [TaxId: 9031]
d2al6a3 : (GLU34) (GLY84) [view usage] : d.15.1.4 |beta-Grasp (ubiquitin-like) |Ubiquitin-like |First domain of FERM |Focal adhesion kinase 1 |Chicken (Gallus gallus) [TaxId: 9031]
d1cjsa_ : (LYS148) (LYS197) [view usage] : e.24.1.1 |Ribosomal protein L1 |Ribosomal protein L1 |Ribosomal protein L1 |Ribosomal protein L1 |Methanococcus jannaschii [TaxId: 2190]
List of distinct SCOP folds where this concept is used (in one or more of its domains):
e.8, c.1, d.58, i.1, c.23, c.18, c.55, c.60, b.2, c.43, d.79, c.52, b.34, d.145, d.15, e.24, d.34, d.189, b.153, d.330,
e.28, d.244