Tableau information
Concept source: d2l7ra_ amino acid (a.a.) range (MET1)(GLY58)
nSSEs in this Concept: 4
String of secondary struct.elems. (SSEs) defining this concept: EEHH
Each SSE's a.a.range: (start resi) (end resi) SSEtype (H=Helix; E=Strand) followed by a numeric SSE ID:
(MET1) (ALA7) E1
(LEU10) (GLU14) E2
(THR20) (GLU32) H3
(THR53) (GLY58) H4
Orientation angles° of SSE-pairs; those in contact shown in bold font
E1
E2 153.4° E2
H3 -58.0° 127.4° H3
H4 93.2° -102.2° -119.9°
Footnote: Inferred from this concept's usages (listed below) was the angular variance of 1σ = ±13.0° about each orientation angle shown above.
Loci of concept usages (shown as a range of a.a. residue ids) in SCOP(v2.05) domains, along with their brief legend taken from SCOP
d4jghc_ : (MET17) (LEU46) [view usage] : d.42.1.1 |POZ domain |POZ domain |BTB/POZ domain |automated matches |Mouse (Mus musculus) [TaxId: 10090]
d4c9zb_ : (PHE123) (ILE155) [view usage] : b.8.1.2 |TRAF domain-like |TRAF domain-like |SIAH, seven in absentia homolog |automated matches |Human (Homo sapiens) [TaxId: 9606]
d2ntsa2 : (SER92) (GLY152) [view usage] : d.15.6.1 |beta-Grasp (ubiquitin-like) |Superantigen toxins, C-terminal domain |Superantigen toxins, C-terminal domain |automated matches |Staphylococcus aureus [TaxId: 93062]
d1ibxb_ : (ARG16) (PRO58) [view usage] : d.15.2.1 |beta-Grasp (ubiquitin-like) |CAD & PB1 domains |CAD domain |Inhibitor of caspase-activated DNase (ICAD), DFF45, N-terminal domain |Human (Homo sapiens) [TaxId: 9606]
d2rdga2 : (VAL98) (GLU151) [view usage] : d.15.6.0 |beta-Grasp (ubiquitin-like) |Superantigen toxins, C-terminal domain |automated matches |automated matches |Staphylococcus aureus [TaxId: 1280]
d1n62d2 : (ALA2) (ASN70) [view usage] : d.15.4.2 |beta-Grasp (ubiquitin-like) |2Fe-2S ferredoxin-like |2Fe-2S ferredoxin domains from multidomain proteins |Carbone monoxide (CO) dehydrogenase iron-sulfur protein, N-domain |Oligotropha carboxidovorans, formerly Pseudomonas carboxydovorans [TaxId: 40137]
d1wwqa1 : (HIS10) (LEU71) [view usage] : d.330.1.1 |ERH-like |ERH-like |ERH-like |Enhancer of rudimentary homolog, ERH |Mouse (Mus musculus) [TaxId: 10090]
d2d3wa_ : (TYR215) (LEU244) [view usage] : c.37.1.0 |P-loop containing nucleoside triphosphate hydrolases |P-loop containing nucleoside triphosphate hydrolases |automated matches |automated matches |Escherichia coli [TaxId: 562]
d1zh6a_ : (PRO252) (LEU306) [view usage] : c.26.1.1 |Adenine nucleotide alpha hydrolase-like |Nucleotidylyl transferase |Class I aminoacyl-tRNA synthetases (RS), catalytic domain |Tyrosyl-tRNA synthetase (TyrRS) |Methanococcus jannaschii [TaxId: 2190]
d1ubfa2 : (SER291) (LEU329) [view usage] : d.48.1.1 |Anti-LPS factor/recA domain |RecA protein, C-terminal domain |RecA protein, C-terminal domain |RecA protein, C-terminal domain |Mycobacterium smegmatis [TaxId: 1772]
d1n5wa2 : (ALA4) (ASN70) [view usage] : d.15.4.2 |beta-Grasp (ubiquitin-like) |2Fe-2S ferredoxin-like |2Fe-2S ferredoxin domains from multidomain proteins |Carbone monoxide (CO) dehydrogenase iron-sulfur protein, N-domain |Oligotropha carboxidovorans, formerly Pseudomonas carboxydovorans [TaxId: 40137]
d2k6db_ : (MET1) (ASN60) [view usage] : d.15.1.1 |beta-Grasp (ubiquitin-like) |Ubiquitin-like |Ubiquitin-related |Ubiquitin |Human (Homo sapiens) [TaxId: 9606]
d4ohja2 : (PRO137) (THR190) [view usage] : d.15.6.1 |beta-Grasp (ubiquitin-like) |Superantigen toxins, C-terminal domain |Superantigen toxins, C-terminal domain |automated matches |Staphylococcus aureus [TaxId: 1280]
d2wyqa_ : (MET1) (GLN46) [view usage] : d.15.1.1 |beta-Grasp (ubiquitin-like) |Ubiquitin-like |Ubiquitin-related |automated matches |Human (Homo sapiens) [TaxId: 9606]
d2fvta1 : (GLY33) (ASP69) [view usage] : c.103.1.1 |MTH938-like |MTH938-like |MTH938-like |Hypothetical protein RPA2829 |Rhodopseudomonas palustris [TaxId: 1076]
d7xima_ : (ASN247) (GLU276) [view usage] : c.1.15.3 |TIM beta/alpha-barrel |Xylose isomerase-like |Xylose isomerase |D-xylose isomerase |Actinoplanes missouriensis [TaxId: 1866]
d1wj4a_ : (GLY41) (GLU84) [view usage] : d.15.1.2 |beta-Grasp (ubiquitin-like) |Ubiquitin-like |UBX domain |Hypothetical protein KIAA0794 |Human (Homo sapiens) [TaxId: 9606]
d1qila2 : (PRO101) (THR150) [view usage] : d.15.6.1 |beta-Grasp (ubiquitin-like) |Superantigen toxins, C-terminal domain |Superantigen toxins, C-terminal domain |Toxic shock syndrome toxin-1 (TSST-1) |Staphylococcus aureus [TaxId: 1280]
d2byfa1 : (GLU4) (SER47) [view usage] : d.15.1.5 |beta-Grasp (ubiquitin-like) |Ubiquitin-like |Ras-binding domain, RBD |Phospholipase C-epsilon-1 |Human (Homo sapiens) [TaxId: 9606]
d4ohjb2 : (PRO137) (THR190) [view usage] : d.15.6.1 |beta-Grasp (ubiquitin-like) |Superantigen toxins, C-terminal domain |Superantigen toxins, C-terminal domain |automated matches |Staphylococcus aureus [TaxId: 1280]
d1ffua2 : (ILE5) (ASP70) [view usage] : d.15.4.2 |beta-Grasp (ubiquitin-like) |2Fe-2S ferredoxin-like |2Fe-2S ferredoxin domains from multidomain proteins |Carbone monoxide (CO) dehydrogenase iron-sulfur protein, N-domain |Hydrogenophaga pseudoflava [TaxId: 47421]
d1aw7a2 : (PRO97) (THR150) [view usage] : d.15.6.1 |beta-Grasp (ubiquitin-like) |Superantigen toxins, C-terminal domain |Superantigen toxins, C-terminal domain |Toxic shock syndrome toxin-1 (TSST-1) |Staphylococcus aureus [TaxId: 1280]
d1rm6c2 : (ASN3) (ALA69) [view usage] : d.15.4.2 |beta-Grasp (ubiquitin-like) |2Fe-2S ferredoxin-like |2Fe-2S ferredoxin domains from multidomain proteins |4-hydroxybenzoyl-CoA reductase gamma subunit HrcC, N-terminal domain |Thauera aromatica [TaxId: 59405]
d3b7sa3 : (GLY268) (LEU332) [view usage] : d.92.1.13 |Zincin-like |Metalloproteases ("zincins"), catalytic domain |Zn aminopeptidase catalytic domain |Leukotriene A4 hydrolase catalytic domain |Human (Homo sapiens) [TaxId: 9606]
d1ffud2 : (ALA2) (ASP70) [view usage] : d.15.4.2 |beta-Grasp (ubiquitin-like) |2Fe-2S ferredoxin-like |2Fe-2S ferredoxin domains from multidomain proteins |Carbone monoxide (CO) dehydrogenase iron-sulfur protein, N-domain |Hydrogenophaga pseudoflava [TaxId: 47421]
d1w9ga_ : (HIS3) (LEU64) [view usage] : d.330.1.1 |ERH-like |ERH-like |ERH-like |Enhancer of rudimentary homolog, ERH |Mouse (Mus musculus) [TaxId: 10090]
d3stda_ : (MET123) (THR168) [view usage] : d.17.4.1 |Cystatin-like |NTF2-like |Scytalone dehydratase |Scytalone dehydratase |Fungus (Magnaporthe grisea) [TaxId: 148305]
d3lp8a2 : (PRO139) (CYS180) [view usage] : d.142.1.0 |ATP-grasp |Glutathione synthetase ATP-binding domain-like |automated matches |automated matches |Ehrlichia chaffeensis [TaxId: 205920]
d3d6va_ : (PRO252) (LEU307) [view usage] : c.26.1.1 |Adenine nucleotide alpha hydrolase-like |Nucleotidylyl transferase |Class I aminoacyl-tRNA synthetases (RS), catalytic domain |automated matches |Methanocaldococcus jannaschii [TaxId: 2190]
d2l7ra_ : (MET1) (GLY58) [view usage] : d.15.1.0 |beta-Grasp (ubiquitin-like) |Ubiquitin-like |automated matches |automated matches |Human (Homo sapiens) [TaxId: 9606]
d3ea6a2 : (SER92) (GLY152) [view usage] : d.15.6.1 |beta-Grasp (ubiquitin-like) |Superantigen toxins, C-terminal domain |Superantigen toxins, C-terminal domain |automated matches |Staphylococcus aureus [TaxId: 1280]
List of distinct SCOP folds where this concept is used (in one or more of its domains):
c.1, c.26, d.92, c.37, d.17, d.142, d.15, d.42, c.103, d.48, b.8, d.330