Tableau information
Concept source: d1rhha2 amino acid (a.a.) range (ASN157)(HIS197)
nSSEs in this Concept: 4
String of secondary struct.elems. (SSEs) defining this concept: EEHE
Each SSE's a.a.range: (start resi) (end resi) SSEtype (H=Helix; E=Strand) followed by a numeric SSE ID:
(ASN157) (THR163) E1
(SER170) (SER181) E2
(SER181) (LYS187) H3
(TYR191) (HIS197) E4
Orientation angles° of SSE-pairs; those in contact shown in bold font
E1
E2 159.4° E2
H3 -96.5° 95.8° H3
E4 -44.4° 153.0° 87.3°
Footnote: Inferred from this concept's usages (listed below) was the angular variance of 1σ = ±13.0° about each orientation angle shown above.
Loci of concept usages (shown as a range of a.a. residue ids) in SCOP(v2.05) domains, along with their brief legend taken from SCOP
d2y3na_ : (ALA76) (THR110) [view usage] : b.2.2.2 |Common fold of diphtheria toxin/transcription factors/cytochrome f |Carbohydrate-binding domain |Cellulose-binding domain family III |automated matches |Bacteroides cellulosolvens [TaxId: 35825]
d1l4za_ : (THR678) (GLY728) [view usage] : b.47.1.2 |Trypsin-like serine proteases |Trypsin-like serine proteases |Eukaryotic proteases |Plasmin(ogen), catalytic domain |Human (Homo sapiens) [TaxId: 9606]
d2iqxa_ : (SER51) (ASN91) [view usage] : b.17.1.1 |PEBP-like |PEBP-like |Phosphatidylethanolamine binding protein |automated matches |Norway rat (Rattus norvegicus) [TaxId: 10116]
d1ynjd1 : (GLU69) (GLU94) [view usage] : e.29.1.2 |beta and beta-prime subunits of DNA dependent RNA-polymerase |beta and beta-prime subunits of DNA dependent RNA-polymerase |RNA-polymerase beta-prime |RNA-polymerase beta-prime |Thermus aquaticus [TaxId: 271]
d1nlta2 : (GLY281) (GLU312) [view usage] : b.4.1.1 |HSP40/DnaJ peptide-binding domain |HSP40/DnaJ peptide-binding domain |HSP40/DnaJ peptide-binding domain |Mitochondrial protein import protein mas5 (Hsp40, Ydj1), C-terminal domain |Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
d1ehia2 : (LEU225) (ILE271) [view usage] : d.142.1.1 |ATP-grasp |Glutathione synthetase ATP-binding domain-like |ATP-binding domain of peptide synthetases |D-alanine:D-lactate ligase VanA, C-domain |Leuconostoc mesenteroides, Ddl2 [TaxId: 1245]
d3gc8a_ : (GLY7) (ARG57) [view usage] : d.144.1.7 |Protein kinase-like (PK-like) |Protein kinase-like (PK-like) |Protein kinases, catalytic subunit |automated matches |Human (Homo sapiens) [TaxId: 9606]
d3kcpb_ : (GLY513) (SER548) [view usage] : b.2.2.2 |Common fold of diphtheria toxin/transcription factors/cytochrome f |Carbohydrate-binding domain |Cellulose-binding domain family III |automated matches |Clostridium thermocellum [TaxId: 203119]
d1wd3a2 : (ALA436) (THR495) [view usage] : b.42.8.1 |beta-Trefoil |AbfB domain |AbfB domain |Alpha-L-arabinofuranosidase B (AbfB), C-terminal domain |Aspergillus kawachii [TaxId: 40384]
d1u6ma_ : (ILE59) (ASP121) [view usage] : d.108.1.1 |Acyl-CoA N-acyltransferases (Nat) |Acyl-CoA N-acyltransferases (Nat) |N-acetyl transferase, NAT |Putative acetyltransferase EF0945 |Enterococcus faecalis [TaxId: 1351]
d4a02a_ : (ASP105) (LYS148) [view usage] : b.1.18.0 |Immunoglobulin-like beta-sandwich |E set domains |automated matches |automated matches |Enterococcus faecalis [TaxId: 1351]
d1b7aa_ : (THR50) (HIS85) [view usage] : b.17.1.1 |PEBP-like |PEBP-like |Phosphatidylethanolamine binding protein |Phosphatidylethanolamine binding protein, PEBP |Cow (Bos taurus) [TaxId: 9913]
d2j1kt_ : (GLU27) (ASP63) [view usage] : b.1.1.1 |Immunoglobulin-like beta-sandwich |Immunoglobulin |V set domains (antibody variable domain-like) |automated matches |Human (Homo sapiens) [TaxId: 9606]
d3s48b_ : (ALA135) (GLU163) [view usage] : b.1.28.1 |Immunoglobulin-like beta-sandwich |NEAT domain-like |NEAT domain |automated matches |Staphylococcus aureus [TaxId: 282459]
d4fl4b_ : (GLY91) (SER126) [view usage] : b.2.2.2 |Common fold of diphtheria toxin/transcription factors/cytochrome f |Carbohydrate-binding domain |Cellulose-binding domain family III |Scaffolding dockerin binding protein A, SdbA |Clostridium thermocellum [TaxId: 1515]
d3sh1b_ : (MET126) (THR160) [view usage] : b.96.1.0 |Nicotinic receptor ligand binding domain-like |Nicotinic receptor ligand binding domain-like |automated matches |automated matches |California sea hare (Aplysia californica) [TaxId: 6500]
d3o69b_ : (GLY45) (GLU82) [view usage] : d.113.1.1 |Nudix |Nudix |MutT-like |ADP-ribose pyrophosphatase homologue YffH |Escherichia coli [TaxId: 562]
d2b59a1 : (GLY91) (SER126) [view usage] : b.2.2.2 |Common fold of diphtheria toxin/transcription factors/cytochrome f |Carbohydrate-binding domain |Cellulose-binding domain family III |Scaffolding dockerin binding protein A, SdbA |Clostridium thermocellum [TaxId: 1515]
d1iova2 : (PHE188) (PRO226) [view usage] : d.142.1.1 |ATP-grasp |Glutathione synthetase ATP-binding domain-like |ATP-binding domain of peptide synthetases |D-ala-D-ala ligase, C-domain |Escherichia coli, gene ddlB [TaxId: 562]
d3stja2 : (ILE237) (SER268) [view usage] : b.36.1.0 |PDZ domain-like |PDZ domain-like |automated matches |automated matches |Escherichia coli K-12 [TaxId: 83333]
d2p3ya1 : (TRP447) (GLU480) [view usage] : e.65.1.1 |VPA0735-like |VPA0735-like |VPA0735-like |Hypothetical protein VPA0735 |Vibrio parahaemolyticus [TaxId: 670]
d1r17a2 : (GLU464) (ASP515) [view usage] : b.2.3.4 |Common fold of diphtheria toxin/transcription factors/cytochrome f |Bacterial adhesins |Fibrinogen-binding domain |Fibrinogen-binding adhesin SdrG |Staphylococcus epidermidis [TaxId: 1282]
d2iuka2 : (VAL382) (SER405) [view usage] : a.119.1.1 |Lipoxigenase |Lipoxigenase |Plant lipoxigenases |automated matches |Soybean (Glycine max) [TaxId: 3847]
d4fvba_ : (GLY8) (SER44) [view usage] : b.47.1.0 |Trypsin-like serine proteases |Trypsin-like serine proteases |automated matches |automated matches |Human enterovirus 71 [TaxId: 39054]
d2bm3a1 : (GLY79) (SER114) [view usage] : b.2.2.2 |Common fold of diphtheria toxin/transcription factors/cytochrome f |Carbohydrate-binding domain |Cellulose-binding domain family III |Scaffolding dockerin binding protein A, SdbA |Clostridium thermocellum [TaxId: 1515]
d1vbga3 : (GLY255) (ASP293) [view usage] : d.142.1.5 |ATP-grasp |Glutathione synthetase ATP-binding domain-like |Pyruvate phosphate dikinase, N-terminal domain |Pyruvate phosphate dikinase, N-terminal domain |Maize (Zea mays) [TaxId: 4577]
d4nn0a_ : (VAL197) (LEU231) [view usage] : b.22.1.0 |TNF-like |TNF-like |automated matches |automated matches |Human (Homo sapiens) [TaxId: 9606]
d1t0bf_ : (LEU119) (GLN151) [view usage] : c.23.16.6 |Flavodoxin-like |Class I glutamine amidotransferase-like |ThuA-like |GK2113 homologue |Bacillus stearothermophilus [TaxId: 1422]
d3seva_ : (ALA106) (THR129) [view usage] : c.94.1.1 |Periplasmic binding protein-like II |Periplasmic binding protein-like II |Phosphate binding protein-like |D-maltodextrin-binding protein, MBP |Escherichia coli [TaxId: 562]
d1l0ca_ : (LEU80) (HIS127) [view usage] : d.108.1.1 |Acyl-CoA N-acyltransferases (Nat) |Acyl-CoA N-acyltransferases (Nat) |N-acetyl transferase, NAT |Serotonin N-acetyltranferase |Sheep (Ovis aries) [TaxId: 9940]
d1g9ka1 : (ALA386) (ASP414) [view usage] : b.80.7.1 |Single-stranded right-handed beta-helix |beta-Roll |Serralysin-like metalloprotease, C-terminal domain |Metalloprotease |Pseudomonas sp., tac ii 18 [TaxId: 306]
d3pmzj_ : (MET126) (THR160) [view usage] : b.96.1.0 |Nicotinic receptor ligand binding domain-like |Nicotinic receptor ligand binding domain-like |automated matches |automated matches |California sea hare (Aplysia californica) [TaxId: 6500]
d2j1kk_ : (GLU26) (PRO61) [view usage] : b.1.1.1 |Immunoglobulin-like beta-sandwich |Immunoglobulin |V set domains (antibody variable domain-like) |automated matches |Human (Homo sapiens) [TaxId: 9606]
d2iqya_ : (SER52) (ASN91) [view usage] : b.17.1.1 |PEBP-like |PEBP-like |Phosphatidylethanolamine binding protein |automated matches |Norway rat (Rattus norvegicus) [TaxId: 10116]
d1jc5f_ : (GLU117) (TYR145) [view usage] : d.32.1.4 |Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase |Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase |Methylmalonyl-CoA epimerase |Methylmalonyl-CoA epimerase |Propionibacterium shermanii [TaxId: 1752]
d4tlga3 : (PRO348) (LEU384) [view usage] : b.132.1.0 |Supernatant protein factor (SPF), C-terminal domain |Supernatant protein factor (SPF), C-terminal domain |automated matches |automated matches |Human (Homo sapiens) [TaxId: 9606]
d3lc8a_ : (ILE108) (THR128) [view usage] : c.94.1.1 |Periplasmic binding protein-like II |Periplasmic binding protein-like II |Phosphate binding protein-like |automated matches |Escherichia coli [TaxId: 562]
List of distinct SCOP folds where this concept is used (in one or more of its domains):
b.80, a.119, c.94, b.47, c.23, d.144, b.2, d.32, b.1, d.108, b.96, b.42, d.142, b.22, d.113, b.17, b.36, b.132, e.65, b.4,
e.29