Tableau information
Concept source: d1jdsc_ amino acid (a.a.) range (PHE45)(GLY88)
nSSEs in this Concept: 4
String of secondary struct.elems. (SSEs) defining this concept: EEHE
Each SSE's a.a.range: (start resi) (end resi) SSEtype (H=Helix; E=Strand) followed by a numeric SSE ID:
(PHE45) (GLY50) E1
(GLU55) (THR61) E2
(GLY65) (GLY80) H3
(VAL83) (GLY88) E4
Orientation angles° of SSE-pairs; those in contact shown in bold font
E1
E2 163.8° E2
H3 -40.4° 149.0° H3
E4 120.8° -43.7° 150.4°
Footnote: Inferred from this concept's usages (listed below) was the angular variance of 1σ = ±11.4° about each orientation angle shown above.
Loci of concept usages (shown as a range of a.a. residue ids) in SCOP(v2.05) domains, along with their brief legend taken from SCOP
d3r34b_ : (ASP39) (GLY93) [view usage] : d.38.1.5 |Thioesterase/thiol ester dehydrase-isomerase |Thioesterase/thiol ester dehydrase-isomerase |PaaI/YdiI-like |automated matches |Arthrobacter sp. [TaxId: 1667]
d4m9da_ : (ASN38) (ILE68) [view usage] : c.37.1.0 |P-loop containing nucleoside triphosphate hydrolases |P-loop containing nucleoside triphosphate hydrolases |automated matches |automated matches |Bacillus anthracis [TaxId: 261594]
d2k23a_ : (GLN117) (PRO171) [view usage] : b.60.1.1 |Lipocalins |Lipocalins |Retinol binding protein-like |automated matches |Norway rat (Rattus norvegicus) [TaxId: 10116]
d1fp6a_ : (VAL75) (VAL126) [view usage] : c.37.1.10 |P-loop containing nucleoside triphosphate hydrolases |P-loop containing nucleoside triphosphate hydrolases |Nitrogenase iron protein-like |Nitrogenase iron protein |Azotobacter vinelandii [TaxId: 354]
d3zq5a3 : (GLN366) (SER408) [view usage] : d.110.2.0 |Profilin-like |GAF domain-like |automated matches |automated matches |Synechocystis sp. [TaxId: 1148]
d2ideb_ : (GLY81) (ARG141) [view usage] : d.58.21.0 |Ferredoxin-like |Molybdenum cofactor biosynthesis protein C, MoaC |automated matches |automated matches |Thermus thermophilus HB8 [TaxId: 300852]
d2hhwa2 : (GLY761) (HIS829) [view usage] : e.8.1.1 |DNA/RNA polymerases |DNA/RNA polymerases |DNA polymerase I |DNA polymerase I (Klenow fragment) |Bacillus stearothermophilus, newly identified strain as yet unnamed [TaxId: 1422]
d1b70b5 : (GLU566) (ALA628) [view usage] : d.104.1.1 |Class II aaRS and biotin synthetases |Class II aaRS and biotin synthetases |Class II aminoacyl-tRNA synthetase (aaRS)-like, catalytic domain |Phenyl-tRNA synthetase (PheRS) beta subunit, PheT, central domain |Thermus thermophilus [TaxId: 274]
d4m9db_ : (ASN38) (GLY69) [view usage] : c.37.1.0 |P-loop containing nucleoside triphosphate hydrolases |P-loop containing nucleoside triphosphate hydrolases |automated matches |automated matches |Bacillus anthracis [TaxId: 261594]
d1ixla_ : (ILE21) (LYS72) [view usage] : d.38.1.5 |Thioesterase/thiol ester dehydrase-isomerase |Thioesterase/thiol ester dehydrase-isomerase |PaaI/YdiI-like |Hypothetical protein PH1136 |Pyrococcus horikoshii [TaxId: 53953]
d1bqna2 : (ILE178) (ASP218) [view usage] : e.8.1.2 |DNA/RNA polymerases |DNA/RNA polymerases |Reverse transcriptase |HIV-1 reverse transcriptase |Human immunodeficiency virus type 1 [TaxId: 11676]
d3gaqa_ : (ASP120) (PHE165) [view usage] : b.60.1.1 |Lipocalins |Lipocalins |Retinol binding protein-like |automated matches |Brown ear tick (Rhipicephalus appendiculatus) [TaxId: 34631]
d1hwwa2 : (ASP956) (ARG1011) [view usage] : b.30.5.6 |Supersandwich |Galactose mutarotase-like |alpha-mannosidase, C-terminal domain |Golgi alpha-mannosidase II |Fruit fly (Drosophila melanogaster) [TaxId: 7227]
d3eyza2 : (TYR762) (HIS829) [view usage] : e.8.1.1 |DNA/RNA polymerases |DNA/RNA polymerases |DNA polymerase I |DNA polymerase I (Klenow fragment) |Bacillus stearothermophilus, newly identified strain as yet unnamed [TaxId: 1422]
d3qkga_ : (GLU110) (ASP165) [view usage] : b.60.1.0 |Lipocalins |Lipocalins |automated matches |automated matches |Human (Homo sapiens) [TaxId: 9606]
d3hisa_ : (PRO227) (ASP257) [view usage] : d.165.1.0 |Ribosome inactivating proteins (RIP) |Ribosome inactivating proteins (RIP) |automated matches |automated matches |Common soapwort (Saponaria officinalis) [TaxId: 3572]
d1vr7b_ : (HIS64) (GLU111) [view usage] : d.156.1.2 |S-adenosylmethionine decarboxylase |S-adenosylmethionine decarboxylase |Bacterial S-adenosylmethionine decarboxylase |automated matches |Thermotoga maritima [TaxId: 2336]
d1s1ih_ : (GLY131) (HIS183) [view usage] : i.1.1.1 |Ribosome and ribosomal fragments |Ribosome and ribosomal fragments |Ribosome complexes |Eukaryotic, cytoplasmic (80S ribosome functional complex) |Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
d1d5ra2 : (ASP24) (LEU70) [view usage] : c.45.1.1 |(Phosphotyrosine protein) phosphatases II |(Phosphotyrosine protein) phosphatases II |Dual specificity phosphatase-like |Phoshphoinositide phosphatase Pten (Pten tumor suppressor), N-terminal domain |Human (Homo sapiens) [TaxId: 9606]
d2ewba1 : (ASP316) (ALA358) [view usage] : c.56.5.3 |Phosphorylase/hydrolase-like |Zn-dependent exopeptidases |Leucine aminopeptidase, C-terminal domain |automated matches |Cow (Bos taurus) [TaxId: 9913]
d3d5bh2 : (GLY120) (ALA165) [view usage] : d.141.1.1 |Ribosomal protein L6 |Ribosomal protein L6 |Ribosomal protein L6 |Ribosomal protein L6 |Thermus thermophilus [TaxId: 274]
d2ov9a1 : (PRO100) (TYR162) [view usage] : d.38.1.5 |Thioesterase/thiol ester dehydrase-isomerase |Thioesterase/thiol ester dehydrase-isomerase |PaaI/YdiI-like |Hypothetical protein RHA1_ro05818 |Rhodococcus sp. RHA1 [TaxId: 101510]
d4dqpd2 : (GLN821) (TYR868) [view usage] : e.8.1.1 |DNA/RNA polymerases |DNA/RNA polymerases |DNA polymerase I |automated matches |Geobacillus kaustophilus [TaxId: 235909]
d1xbna_ : (GLY111) (GLU160) [view usage] : d.278.1.1 |Ligand-binding domain in the NO signalling and Golgi transport |Ligand-binding domain in the NO signalling and Golgi transport |H-NOX domain |Methyl-accepting chemotaxis protein |Thermoanaerobacter tengcongensis [TaxId: 119072]
d1fp6c_ : (LEU76) (VAL126) [view usage] : c.37.1.10 |P-loop containing nucleoside triphosphate hydrolases |P-loop containing nucleoside triphosphate hydrolases |Nitrogenase iron protein-like |Nitrogenase iron protein |Azotobacter vinelandii [TaxId: 354]
d1tmia_ : (HIS64) (GLU111) [view usage] : d.156.1.2 |S-adenosylmethionine decarboxylase |S-adenosylmethionine decarboxylase |Bacterial S-adenosylmethionine decarboxylase |S-adenosylmethionine decarboxylase (SamDC, SpeH) |Thermotoga maritima [TaxId: 2336]
d4ni2b_ : (PHE468) (GLY526) [view usage] : d.58.29.0 |Ferredoxin-like |Nucleotide cyclase |automated matches |automated matches |Human (Homo sapiens) [TaxId: 9606]
d1kska4 : (LYS158) (ARG202) [view usage] : d.265.1.3 |Pseudouridine synthase |Pseudouridine synthase |Pseudouridine synthase RsuA/RluD |Ribosomal small subunit pseudouridine 516 synthase RsuA |Escherichia coli [TaxId: 562]
d1mkpa_ : (ALA204) (VAL239) [view usage] : c.45.1.1 |(Phosphotyrosine protein) phosphatases II |(Phosphotyrosine protein) phosphatases II |Dual specificity phosphatase-like |Mapk phosphatase |Human (Homo sapiens), pyst1 (mkp3) [TaxId: 9606]
d2ov9c_ : (PRO100) (TYR162) [view usage] : d.38.1.5 |Thioesterase/thiol ester dehydrase-isomerase |Thioesterase/thiol ester dehydrase-isomerase |PaaI/YdiI-like |Hypothetical protein RHA1_ro05818 |Rhodococcus sp. RHA1 [TaxId: 101510]
d1cjka_ : (HIS431) (HIS488) [view usage] : d.58.29.1 |Ferredoxin-like |Nucleotide cyclase |Adenylyl and guanylyl cyclase catalytic domain |Adenylyl cyclase VC1, domain C1a |Dog (Canis familiaris) [TaxId: 9615]
d3hwua_ : (LYS33) (GLY73) [view usage] : d.290.1.0 |AF0104/ALDC/Ptd012-like |AF0104/ALDC/Ptd012-like |automated matches |automated matches |Ralstonia eutropha [TaxId: 264198]
d3htna_ : (SER46) (GLY86) [view usage] : d.290.1.0 |AF0104/ALDC/Ptd012-like |AF0104/ALDC/Ptd012-like |automated matches |automated matches |Bacteroides thetaiotaomicron [TaxId: 226186]
d1blle2 : (ASP316) (THR359) [view usage] : c.56.5.3 |Phosphorylase/hydrolase-like |Zn-dependent exopeptidases |Leucine aminopeptidase, C-terminal domain |Leucine aminopeptidase, C-terminal domain |Cow (Bos taurus) [TaxId: 9913]
d3lbea_ : (VAL18) (ASN74) [view usage] : d.38.1.0 |Thioesterase/thiol ester dehydrase-isomerase |Thioesterase/thiol ester dehydrase-isomerase |automated matches |automated matches |Streptococcus mutans [TaxId: 210007]
d4es7a_ : (GLU103) (ASP158) [view usage] : b.60.1.0 |Lipocalins |Lipocalins |automated matches |automated matches |Human (Homo sapiens) [TaxId: 9606]
d3hiqa_ : (PRO227) (ASP257) [view usage] : d.165.1.0 |Ribosome inactivating proteins (RIP) |Ribosome inactivating proteins (RIP) |automated matches |automated matches |Common soapwort (Saponaria officinalis) [TaxId: 3572]
d1ck1a2 : (GLY126) (GLU190) [view usage] : d.15.6.1 |beta-Grasp (ubiquitin-like) |Superantigen toxins, C-terminal domain |Superantigen toxins, C-terminal domain |Staphylococcal enterotoxin C3, SEC3 |Staphylococcus aureus [TaxId: 1280]
d2fwrb2 : (HIS44) (ILE83) [view usage] : c.37.1.19 |P-loop containing nucleoside triphosphate hydrolases |P-loop containing nucleoside triphosphate hydrolases |Tandem AAA-ATPase domain |DNA repair protein RAD25 |Archaeoglobus fulgidus [TaxId: 2234]
d1htya2 : (ASP956) (ARG1011) [view usage] : b.30.5.6 |Supersandwich |Galactose mutarotase-like |alpha-mannosidase, C-terminal domain |Golgi alpha-mannosidase II |Fruit fly (Drosophila melanogaster) [TaxId: 7227]
d4a0yb_ : (ILE83) (THR133) [view usage] : d.38.1.0 |Thioesterase/thiol ester dehydrase-isomerase |Thioesterase/thiol ester dehydrase-isomerase |automated matches |automated matches |Staphylococcus aureus [TaxId: 1280]
d2j9aa1 : (ASP316) (THR359) [view usage] : c.56.5.3 |Phosphorylase/hydrolase-like |Zn-dependent exopeptidases |Leucine aminopeptidase, C-terminal domain |automated matches |Cow (Bos taurus) [TaxId: 9913]
d3r34a_ : (ASP39) (GLY93) [view usage] : d.38.1.5 |Thioesterase/thiol ester dehydrase-isomerase |Thioesterase/thiol ester dehydrase-isomerase |PaaI/YdiI-like |automated matches |Arthrobacter sp. [TaxId: 1667]
d2g3wb_ : (VAL7) (TYR74) [view usage] : c.52.1.33 |Restriction endonuclease-like |Restriction endonuclease-like |YaeQ-like |Hypothetical protein XAC2396 |Xanthomonas axonopodis pv. citri [TaxId: 92829]
d1hnib_ : (ASP177) (ASP237) [view usage] : e.8.1.2 |DNA/RNA polymerases |DNA/RNA polymerases |Reverse transcriptase |HIV-1 reverse transcriptase |Human immunodeficiency virus type 1 [TaxId: 11676]
d4c9za_ : (ARG124) (GLY160) [view usage] : b.8.1.2 |TRAF domain-like |TRAF domain-like |SIAH, seven in absentia homolog |automated matches |Human (Homo sapiens) [TaxId: 9606]
d3r36b_ : (ASP39) (GLY93) [view usage] : d.38.1.5 |Thioesterase/thiol ester dehydrase-isomerase |Thioesterase/thiol ester dehydrase-isomerase |PaaI/YdiI-like |automated matches |Arthrobacter sp. [TaxId: 1667]
d2h4ud_ : (VAL31) (VAL84) [view usage] : d.38.1.5 |Thioesterase/thiol ester dehydrase-isomerase |Thioesterase/thiol ester dehydrase-isomerase |PaaI/YdiI-like |Hypothetical protein Them2 |Human (Homo sapiens) [TaxId: 9606]
d3l4ra_ : (SER99) (SER152) [view usage] : b.60.1.0 |Lipocalins |Lipocalins |automated matches |automated matches |Dog (Canis familiaris) [TaxId: 9615]
d1h3qa_ : (MET1) (THR63) [view usage] : d.110.4.3 |Profilin-like |SNARE-like |Sedlin (SEDL) |Sedlin (SEDL) |Mouse (Mus musculus) [TaxId: 10090]
List of distinct SCOP folds where this concept is used (in one or more of its domains):
e.8, d.58, i.1, b.30, c.56, c.45, d.165, c.37, d.104, b.60, d.110, d.278, d.38, c.52, d.15, d.290, d.265, d.156, b.8, d.141