Tableau information
Concept source: d4frua_ amino acid (a.a.) range (TRP104)(GLU141)
nSSEs in this Concept: 4
String of secondary struct.elems. (SSEs) defining this concept: EEHE
Each SSE's a.a.range: (start resi) (end resi) SSEtype (H=Helix; E=Strand) followed by a numeric SSE ID:
(TRP104) (ALA110) E1
(SER117) (THR123) E2
(THR126) (LYS132) H3
(LYS132) (GLU141) E4
Orientation angles° of SSE-pairs; those in contact shown in bold font
E1
E2 132.5° E2
H3 62.9° -150.3° H3
E4 144.0° -60.6° -125.5°
Footnote: Inferred from this concept's usages (listed below) was the angular variance of 1σ = ±13.0° about each orientation angle shown above.
Loci of concept usages (shown as a range of a.a. residue ids) in SCOP(v2.05) domains, along with their brief legend taken from SCOP
d4f52d_ : (THR69) (GLN104) [view usage] : g.44.1.1 |RING/U-box |RING/U-box |RING finger domain, C3HC4 |RIGG-box protein 1 (RBX1) of SCF ubiquitin ligase complex |Human (Homo sapiens) [TaxId: 9606]
d2wlwa_ : (LEU98) (GLY130) [view usage] : b.62.1.1 |Cyclophilin-like |Cyclophilin-like |Cyclophilin (peptidylprolyl isomerase) |automated matches |Rhesus monkey (Macaca mulatta) [TaxId: 9544]
d1ueqa_ : (GLY66) (CYS103) [view usage] : b.36.1.1 |PDZ domain-like |PDZ domain-like |PDZ domain |Membrane associated guanylate kinase inverted-2 (MAGI-2, KIAA0705) |Human (Homo sapiens) [TaxId: 9606]
d1mzwa_ : (LEU110) (ASP146) [view usage] : b.62.1.1 |Cyclophilin-like |Cyclophilin-like |Cyclophilin (peptidylprolyl isomerase) |Cyclophilin (eukaryotic) |Human (Homo sapiens), U4/U6 snRNP-specific cyclophilin snucyp-20 [TaxId: 9606]
d1ibxb_ : (PRO58) (LEU88) [view usage] : d.15.2.1 |beta-Grasp (ubiquitin-like) |CAD & PB1 domains |CAD domain |Inhibitor of caspase-activated DNase (ICAD), DFF45, N-terminal domain |Human (Homo sapiens) [TaxId: 9606]
d2kv8a_ : (GLY44) (VAL82) [view usage] : b.36.1.0 |PDZ domain-like |PDZ domain-like |automated matches |automated matches |Human (Homo sapiens) [TaxId: 9606]
d1jroa4 : (ALA303) (PRO342) [view usage] : d.145.1.3 |FAD-binding/transporter-associated domain-like |FAD-binding/transporter-associated domain-like |CO dehydrogenase flavoprotein N-terminal domain-like |Xanthine dehydrogenase chain A, domain 3 |Rhodobacter capsulatus [TaxId: 1061]
d1e3pa6 : (PRO155) (GLY188) [view usage] : d.101.1.1 |Ribonuclease PH domain 2-like |Ribonuclease PH domain 2-like |Ribonuclease PH domain 2-like |Polynucleotide phosphorylase/guanosine pentaphosphate synthase (PNPase/GPSI), domains 2 and 5 |Streptomyces antibioticus [TaxId: 1890]
d1ajwa_ : (ARG74) (LYS105) [view usage] : b.1.18.8 |Immunoglobulin-like beta-sandwich |E set domains |RhoGDI-like |Rho GDP-dissociation inhibitor 1, RhoGDI |Cow (Bos taurus) [TaxId: 9913]
d1rm6b2 : (ALA172) (PRO213) [view usage] : d.145.1.3 |FAD-binding/transporter-associated domain-like |FAD-binding/transporter-associated domain-like |CO dehydrogenase flavoprotein N-terminal domain-like |4-hydroxybenzoyl-CoA reductase beta subunit HrcB, N-terminal domain |Thauera aromatica [TaxId: 59405]
d1rlfa_ : (GLU699) (ARG735) [view usage] : d.15.1.5 |beta-Grasp (ubiquitin-like) |Ubiquitin-like |Ras-binding domain, RBD |RalGDS-like factor, Rlf |Mouse (Mus musculus) [TaxId: 10090]
d1he8a3 : (ASP269) (ASP308) [view usage] : d.15.1.5 |beta-Grasp (ubiquitin-like) |Ubiquitin-like |Ras-binding domain, RBD |Phoshoinositide 3-kinase (PI3K) |Human (Homo sapiens) [TaxId: 9606]
d2aamb_ : (GLN94) (ARG157) [view usage] : c.1.8.15 |TIM beta/alpha-barrel |(Trans)glycosidases |TM1410-like |Hypothetical protein TM1410 |Thermotoga maritima [TaxId: 2336]
d2v0ea1 : (THR2567) (PRO2606) [view usage] : d.76.2.1 |GYF/BRK domain-like |BRK domain-like |BRK domain-like |Chromodomain-helicase-DNA-binding protein 7, CHD7 |Human (Homo sapiens) [TaxId: 9606]
d4wf8a_ : (SER991) (ALA1039) [view usage] : b.47.1.3 |Trypsin-like serine proteases |Trypsin-like serine proteases |Viral proteases |automated matches |Hepatitis C virus [TaxId: 11103]
d2bayd_ : (ARG11) (PRO55) [view usage] : g.44.1.2 |RING/U-box |RING/U-box |U-box |automated matches |Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
d3qdoa_ : (GLY96) (THR129) [view usage] : b.36.1.0 |PDZ domain-like |PDZ domain-like |automated matches |automated matches |Norway rat (Rattus norvegicus) [TaxId: 10116]
d2e7ka_ : (GLY51) (GLY87) [view usage] : b.36.1.0 |PDZ domain-like |PDZ domain-like |automated matches |automated matches |Human (Homo sapiens) [TaxId: 9606]
d2v4ja1 : (CYS288) (GLU322) [view usage] : d.58.1.5 |Ferredoxin-like |4Fe-4S ferredoxins |Ferredoxin domains from multidomain proteins |DsrA insert domain |Desulfovibrio vulgaris [TaxId: 881]
d1b0pa3 : (LEU260) (VAL302) [view usage] : c.48.1.3 |TK C-terminal domain-like |TK C-terminal domain-like |Pyruvate-ferredoxin oxidoreductase, PFOR, domain II |Pyruvate-ferredoxin oxidoreductase, PFOR, domain II |Desulfovibrio africanus [TaxId: 873]
d1i2ka_ : (ASN178) (VAL219) [view usage] : e.17.1.1 |D-aminoacid aminotransferase-like PLP-dependent enzymes |D-aminoacid aminotransferase-like PLP-dependent enzymes |D-aminoacid aminotransferase-like PLP-dependent enzymes |Aminodeoxychorismate lyase |Escherichia coli [TaxId: 562]
d2a39a_ : (HIS38) (ILE78) [view usage] : b.29.1.10 |Concanavalin A-like lectins/glucanases |Concanavalin A-like lectins/glucanases |Glycosyl hydrolase family 7 catalytic core |Cellobiohydrolase I (cellulase, Endoglucanase I, CBH1) |Humicola insolens, Cel7b [TaxId: 34413]
d1obya_ : (GLU235) (THR268) [view usage] : b.36.1.1 |PDZ domain-like |PDZ domain-like |PDZ domain |Syntenin 1 |Human (Homo sapiens) [TaxId: 9606]
d2h59a_ : (GLU120) (PRO157) [view usage] : c.31.1.5 |DHS-like NAD/FAD-binding domain |DHS-like NAD/FAD-binding domain |Sir2 family of transcriptional regulators |NAD-dependent deacetylase NpdA |Thermotoga maritima [TaxId: 2336]
d2hdka_ : (ASN242) (GLU288) [view usage] : e.17.1.1 |D-aminoacid aminotransferase-like PLP-dependent enzymes |D-aminoacid aminotransferase-like PLP-dependent enzymes |D-aminoacid aminotransferase-like PLP-dependent enzymes |automated matches |Human (Homo sapiens) [TaxId: 9606]
d2bayf_ : (ARG11) (PRO55) [view usage] : g.44.1.2 |RING/U-box |RING/U-box |U-box |automated matches |Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
d2m0ta_ : (GLY56) (ASP92) [view usage] : b.36.1.0 |PDZ domain-like |PDZ domain-like |automated matches |automated matches |Human (Homo sapiens) [TaxId: 9606]
d2ba0d2 : (MET158) (LEU192) [view usage] : d.101.1.1 |Ribonuclease PH domain 2-like |Ribonuclease PH domain 2-like |Ribonuclease PH domain 2-like |Exosome complex exonuclease 1, ECX1 |Archaeoglobus fulgidus [TaxId: 2234]
d1sb7a_ : (ASP223) (ALA258) [view usage] : d.265.1.4 |Pseudouridine synthase |Pseudouridine synthase |tRNA pseudouridine synthase TruD |tRNA pseudouridine synthase TruD |Escherichia coli [TaxId: 562]
d1doxa_ : (LYS6) (GLU88) [view usage] : d.15.4.1 |beta-Grasp (ubiquitin-like) |2Fe-2S ferredoxin-like |2Fe-2S ferredoxin-related |2Fe-2S ferredoxin |Synechocystis sp. PCC 6803 [TaxId: 1148]
d2h7aa1 : (MET14) (LEU53) [view usage] : d.350.1.1 |YcgL-like |YcgL-like |YcgL-like |Hypothetical protein YcgL |Escherichia coli [TaxId: 562]
d2qkxa1 : (TYR150) (VAL184) [view usage] : c.68.1.0 |Nucleotide-diphospho-sugar transferases |Nucleotide-diphospho-sugar transferases |automated matches |automated matches |Mycobacterium tuberculosis
d3rl7f_ : (ASN273) (TYR306) [view usage] : b.36.1.1 |PDZ domain-like |PDZ domain-like |PDZ domain |automated matches |Human (Homo sapiens) [TaxId: 9606]
d1whaa_ : (GLY60) (ALA98) [view usage] : b.36.1.1 |PDZ domain-like |PDZ domain-like |PDZ domain |Scribble (KIAA0147) |Human (Homo sapiens) [TaxId: 9606]
d1ueza_ : (GLY56) (GLY93) [view usage] : b.36.1.1 |PDZ domain-like |PDZ domain-like |PDZ domain |KIAA1526 protein |Human (Homo sapiens) [TaxId: 9606]
List of distinct SCOP folds where this concept is used (in one or more of its domains):
c.1, d.58, c.68, b.29, b.47, c.31, e.17, b.1, b.62, d.145, c.48, d.15, b.36, d.265, d.101, g.44, d.76, d.350