Tableau information
Concept source: d1k4ia_ amino acid (a.a.) range (PRO168)(ILE213)
nSSEs in this Concept: 4
String of secondary struct.elems. (SSEs) defining this concept: EEHE
Each SSE's a.a.range: (start resi) (end resi) SSEtype (H=Helix; E=Strand) followed by a numeric SSE ID:
(PRO168) (GLN180) E1
(ALA189) (MET193) E2
(ASP197) (GLY207) H3
(GLY207) (ILE213) E4
Orientation angles° of SSE-pairs; those in contact shown in bold font
E1
E2 150.0° E2
H3 108.6° -92.0° H3
E4 -102.8° 59.3° 148.6°
Footnote: Inferred from this concept's usages (listed below) was the angular variance of 1σ = ±12.7° about each orientation angle shown above.
Loci of concept usages (shown as a range of a.a. residue ids) in SCOP(v2.05) domains, along with their brief legend taken from SCOP
d1gxpe_ : (GLU130) (SER175) [view usage] : a.4.6.1 |DNA/RNA-binding 3-helical bundle |C-terminal effector domain of the bipartite response regulators |PhoB-like |PhoB |Escherichia coli [TaxId: 562]
d3j38g_ : (MET1) (ALA38) [view usage] : i.1.1.1 |Ribosome and ribosomal fragments |Ribosome and ribosomal fragments |Ribosome complexes |Eukaryotic, cytoplasmic (80S ribosome functional complex) |Drosophila melanogaster [TaxId: 7227]
d3jw0d_ : (LEU628) (ALA667) [view usage] : d.148.1.0 |Hect, E3 ligase catalytic domain |Hect, E3 ligase catalytic domain |automated matches |automated matches |Human (Homo sapiens) [TaxId: 9606]
d4gidc_ : (TYR353) (ASP394) [view usage] : b.50.1.2 |Acid proteases |Acid proteases |Pepsin-like |beta-secretase (memapsin) |Human (Homo sapiens) [TaxId: 9606]
d2o5hb_ : (GLU93) (TRP121) [view usage] : d.363.1.1 |NMB0513-like |NMB0513-like |NMB0513-like |Hypothetical protein NMB0513 |Neisseria meningitidis [TaxId: 487]
d1go2a1 : (GLN101) (GLU139) [view usage] : b.43.4.2 |Reductase/isomerase/elongation factor common domain |Riboflavin synthase domain-like |Ferredoxin reductase FAD-binding domain-like |Ferredoxin reductase (flavodoxin reductase) N-terminal domain |Anabaena sp., pcc 7119 [TaxId: 1167]
d1k4ia_ : (PRO168) (ILE213) [view usage] : d.115.1.2 |YrdC/RibB |YrdC/RibB |3,4-dihydroxy-2-butanone 4-phosphate synthase, DHBP synthase, RibB |3,4-dihydroxy-2-butanone 4-phosphate synthase, DHBP synthase, RibB |Fungus (Magnaporthe grisea) [TaxId: 148305]
d1kzla1 : (ALA8) (ALA43) [view usage] : b.43.4.3 |Reductase/isomerase/elongation factor common domain |Riboflavin synthase domain-like |Riboflavin synthase |Riboflavin synthase |Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]
d3u5cg_ : (MET1) (GLY38) [view usage] : i.1.1.1 |Ribosome and ribosomal fragments |Ribosome and ribosomal fragments |Ribosome complexes |Eukaryotic, cytoplasmic (80S ribosome functional complex) |Saccharomyces cerevisiae [TaxId: 559292]
d1gxpb_ : (GLU130) (SER175) [view usage] : a.4.6.1 |DNA/RNA-binding 3-helical bundle |C-terminal effector domain of the bipartite response regulators |PhoB-like |PhoB |Escherichia coli [TaxId: 562]
d2h6sa_ : (PHE279) (LEU320) [view usage] : b.50.1.2 |Acid proteases |Acid proteases |Pepsin-like |automated matches |Yeast (Candida albicans) [TaxId: 5476]
d4ho4a_ : (ASN101) (ASN136) [view usage] : c.68.1.6 |Nucleotide-diphospho-sugar transferases |Nucleotide-diphospho-sugar transferases |glucose-1-phosphate thymidylyltransferase |RmlA (RfbA) |Aneurinibacillus thermoaerophilus [TaxId: 143495]
d2gz4b_ : (ALA9) (VAL56) [view usage] : a.211.1.1 |HD-domain/PDEase-like |HD-domain/PDEase-like |HD domain |Hypothetical protein Atu1052 |Agrobacterium tumefaciens [TaxId: 358]
d1wc5c_ : (MET1124) (SER1163) [view usage] : d.58.29.1 |Ferredoxin-like |Nucleotide cyclase |Adenylyl and guanylyl cyclase catalytic domain |Adenylate cyclase CyaC |Spirulina platensis [TaxId: 118562]
d2ap9a1 : (SER180) (LEU214) [view usage] : c.73.1.2 |Carbamate kinase-like |Carbamate kinase-like |N-acetyl-l-glutamate kinase |N-acetyl-l-glutamate kinase |Mycobacterium tuberculosis [TaxId: 1773]
d4nrta_ : (ARG392) (ARG419) [view usage] : e.8.1.4 |DNA/RNA polymerases |DNA/RNA polymerases |RNA-dependent RNA-polymerase |automated matches |Norwalk-like virus [TaxId: 95340]
d2xzmy_ : (MET1) (ASP39) [view usage] : i.1.1.3 |Ribosome and ribosomal fragments |Ribosome and ribosomal fragments |Small subunit |Eukaryotic, cytoplasmic (40S subunit) |Tetrahymena thermophila [TaxId: 5911]
d3keia_ : (TYR57) (ALA84) [view usage] : c.94.1.1 |Periplasmic binding protein-like II |Periplasmic binding protein-like II |Phosphate binding protein-like |automated matches |Norway rat (Rattus norvegicus) [TaxId: 10116]
d1ny711 : (GLY37) (GLY68) [view usage] : b.121.4.2 |Nucleoplasmin-like/VP (viral coat and capsid proteins) |Positive stranded ssRNA viruses |Comoviridae-like VP |Comovirus coat proteins (VP37 and VP23) |CPMV (Cowpea mosaic virus) [TaxId: 12264]
d3elah_ : (THR355) (PRO406) [view usage] : b.47.1.2 |Trypsin-like serine proteases |Trypsin-like serine proteases |Eukaryotic proteases |Coagulation factor VIIa |Human (Homo sapiens) [TaxId: 9606]
d2gz4c_ : (ALA9) (VAL56) [view usage] : a.211.1.1 |HD-domain/PDEase-like |HD-domain/PDEase-like |HD domain |Hypothetical protein Atu1052 |Agrobacterium tumefaciens [TaxId: 358]
List of distinct SCOP folds where this concept is used (in one or more of its domains):
e.8, c.94, d.58, i.1, c.68, b.47, b.50, a.211, b.121, c.73, a.4, b.43, d.148, d.115, d.363