Tableau information
Concept source: d3g8db2 amino acid (a.a.) range (PRO155)(LYS202)
nSSEs in this Concept: 4
String of secondary struct.elems. (SSEs) defining this concept: EEHE
Each SSE's a.a.range: (start resi) (end resi) SSEtype (H=Helix; E=Strand) followed by a numeric SSE ID:
(PRO155) (ALA160) E1
(ARG167) (ARG173) E2
(GLY174) (ALA192) H3
(ASP196) (LYS202) E4
Orientation angles° of SSE-pairs; those in contact shown in bold font
E1
E2 158.3° E2
H3 -18.8° 176.4° H3
E4 156.8° -41.9° 141.6°
Footnote: Inferred from this concept's usages (listed below) was the angular variance of 1σ = ±9.6° about each orientation angle shown above.
Loci of concept usages (shown as a range of a.a. residue ids) in SCOP(v2.05) domains, along with their brief legend taken from SCOP
d1e4ea2 : (PRO167) (GLN208) [view usage] : d.142.1.1 |ATP-grasp |Glutathione synthetase ATP-binding domain-like |ATP-binding domain of peptide synthetases |D-alanine:D-lactate ligase VanA, C-domain |Enterococcus faecium [TaxId: 1352]
d3lwba2 : (PRO190) (GLY235) [view usage] : d.142.1.0 |ATP-grasp |Glutathione synthetase ATP-binding domain-like |automated matches |automated matches |Mycobacterium tuberculosis [TaxId: 1773]
d2cbia3 : (TYR133) (THR178) [view usage] : d.92.2.3 |Zincin-like |beta-N-acetylhexosaminidase-like domain |Hyaluronidase N-terminal domain-like |Hyaluronidase N-terminal domain |Clostridium perfringens [TaxId: 1502]
d1xdna_ : (THR91) (ALA163) [view usage] : d.142.2.4 |ATP-grasp |DNA ligase/mRNA capping enzyme, catalytic domain |RNA ligase |RNA editing ligase MP52 |Trypanosome (Trypanosoma brucei) [TaxId: 5691]
d1e4eb2 : (PRO167) (GLN208) [view usage] : d.142.1.1 |ATP-grasp |Glutathione synthetase ATP-binding domain-like |ATP-binding domain of peptide synthetases |D-alanine:D-lactate ligase VanA, C-domain |Enterococcus faecium [TaxId: 1352]
d2jvfa1 : (ILE4) (SER51) [view usage] : k.41.1.1 |New fold designs |New fold designs |alpha+beta folds |Top7 |unidentified [TaxId: 32644]
d1ehia2 : (ILE176) (GLU217) [view usage] : d.142.1.1 |ATP-grasp |Glutathione synthetase ATP-binding domain-like |ATP-binding domain of peptide synthetases |D-alanine:D-lactate ligase VanA, C-domain |Leuconostoc mesenteroides, Ddl2 [TaxId: 1245]
d1i7na2 : (VAL268) (PRO307) [view usage] : d.142.1.3 |ATP-grasp |Glutathione synthetase ATP-binding domain-like |Synapsin C-terminal domain |Synapsin II |Norway rat (Rattus norvegicus) [TaxId: 10116]
d1mw7a_ : (SER79) (ASN124) [view usage] : e.39.1.1 |YebC-like |YebC-like |YebC-like |Hypothetical protein HP0162 |Helicobacter pylori [TaxId: 210]
d1wd3a1 : (TYR50) (ILE88) [view usage] : b.29.1.21 |Concanavalin A-like lectins/glucanases |Concanavalin A-like lectins/glucanases |Alpha-L-arabinofuranosidase B, N-terminal domain |Alpha-L-arabinofuranosidase B, N-terminal domain |Aspergillus kawachii [TaxId: 40384]
d4fu0a2 : (PRO179) (GLU220) [view usage] : d.142.1.0 |ATP-grasp |Glutathione synthetase ATP-binding domain-like |automated matches |automated matches |Enterococcus faecalis [TaxId: 1351]
d2dzda2 : (PRO159) (LYS206) [view usage] : d.142.1.0 |ATP-grasp |Glutathione synthetase ATP-binding domain-like |automated matches |automated matches |Geobacillus thermodenitrificans [TaxId: 33940]
d1ulza3 : (PRO153) (LYS200) [view usage] : d.142.1.2 |ATP-grasp |Glutathione synthetase ATP-binding domain-like |BC ATP-binding domain-like |Biotin carboxylase (BC), domain 2 |Aquifex aeolicus [TaxId: 63363]
d1qysa_ : (ASP3) (THR53) [view usage] : k.41.1.1 |New fold designs |New fold designs |alpha+beta folds |Top7 |Synthetic, computationally designed sequence
d1iova2 : (PRO140) (LYS181) [view usage] : d.142.1.1 |ATP-grasp |Glutathione synthetase ATP-binding domain-like |ATP-binding domain of peptide synthetases |D-ala-D-ala ligase, C-domain |Escherichia coli, gene ddlB [TaxId: 562]
d2cbfa_ : (THR205) (GLY246) [view usage] : c.90.1.1 |Tetrapyrrole methylase |Tetrapyrrole methylase |Tetrapyrrole methylase |Cobalt precorrin-4 methyltransferase CbiF |Bacillus megaterium [TaxId: 1404]
d2f5ya1 : (LEU57) (LEU90) [view usage] : b.36.1.1 |PDZ domain-like |PDZ domain-like |PDZ domain |Regulator of G-protein signaling 3, RGS3 |Human (Homo sapiens) [TaxId: 9606]
d1ct9a2 : (ILE143) (GLU173) [view usage] : d.153.1.1 |Ntn hydrolase-like |N-terminal nucleophile aminohydrolases (Ntn hydrolases) |Class II glutamine amidotransferases |Asparagine synthetase B, N-terminal domain |Escherichia coli [TaxId: 562]
d1eucb2 : (LYS41) (GLU107) [view usage] : d.142.1.4 |ATP-grasp |Glutathione synthetase ATP-binding domain-like |Succinyl-CoA synthetase, beta-chain, N-terminal domain |Succinyl-CoA synthetase, beta-chain, N-terminal domain |Pig (Sus scrofa) [TaxId: 9823]
d2d43a1 : (TYR50) (ILE88) [view usage] : b.29.1.21 |Concanavalin A-like lectins/glucanases |Concanavalin A-like lectins/glucanases |Alpha-L-arabinofuranosidase B, N-terminal domain |automated matches |Aspergillus kawachii [TaxId: 40384]
d1cbfa_ : (THR205) (GLY246) [view usage] : c.90.1.1 |Tetrapyrrole methylase |Tetrapyrrole methylase |Tetrapyrrole methylase |Cobalt precorrin-4 methyltransferase CbiF |Bacillus megaterium [TaxId: 1404]
d3lwbb2 : (PRO190) (ALA231) [view usage] : d.142.1.0 |ATP-grasp |Glutathione synthetase ATP-binding domain-like |automated matches |automated matches |Mycobacterium tuberculosis [TaxId: 1773]
d1vkza3 : (PRO131) (GLU178) [view usage] : d.142.1.2 |ATP-grasp |Glutathione synthetase ATP-binding domain-like |BC ATP-binding domain-like |Glycinamide ribonucleotide synthetase (GAR-syn), domain 2 |Thermotoga maritima [TaxId: 2336]
d1gqia2 : (GLU99) (PRO150) [view usage] : d.92.2.2 |Zincin-like |beta-N-acetylhexosaminidase-like domain |alpha-D-glucuronidase, N-terminal domain |alpha-D-glucuronidase, N-terminal domain |Pseudomonas cellulosa [TaxId: 155077]
d1cdqa_ : (CYS26) (LYS65) [view usage] : g.7.1.3 |Snake toxin-like |Snake toxin-like |Extracellular domain of cell surface receptors |CD59 |Human (Homo sapiens) [TaxId: 9606]
d1rlha_ : (TYR36) (ASN81) [view usage] : d.256.1.1 |Ta1353-like |Ta1353-like |Ta1353-like |Hypothetical protein Ta1353 |Thermoplasma acidophilum [TaxId: 2303]
d3r5xd1 : (PRO132) (LYS173) [view usage] : d.142.1.0 |ATP-grasp |Glutathione synthetase ATP-binding domain-like |automated matches |automated matches |Anthrax bacillus (Bacillus anthracis) [TaxId: 1392]
d2yw2a2 : (PRO139) (GLU186) [view usage] : d.142.1.0 |ATP-grasp |Glutathione synthetase ATP-binding domain-like |automated matches |automated matches |Aquifex aeolicus [TaxId: 63363]
d3r23a1 : (PRO132) (LYS173) [view usage] : d.142.1.0 |ATP-grasp |Glutathione synthetase ATP-binding domain-like |automated matches |automated matches |Bacillus anthracis [TaxId: 198094]
List of distinct SCOP folds where this concept is used (in one or more of its domains):
c.90, b.29, d.92, d.153, d.142, d.256, b.36, g.7, e.39, k.41