Tableau information
Concept source: d4akqa3 amino acid (a.a.) range (GLU473)(ILE508)
nSSEs in this Concept: 4
String of secondary struct.elems. (SSEs) defining this concept: EEHE
Each SSE's a.a.range: (start resi) (end resi) SSEtype (H=Helix; E=Strand) followed by a numeric SSE ID:
(GLU473) (TYR484) E1
(GLY486) (CYS492) E2
(ILE494) (TYR500) H3
(MET502) (ILE508) E4
Orientation angles° of SSE-pairs; those in contact shown in bold font
E1
E2 159.6° E2
H3 -69.3° 125.1° H3
E4 -40.4° 150.3° -73.2°
Footnote: Inferred from this concept's usages (listed below) was the angular variance of 1σ = ±10.9° about each orientation angle shown above.
Loci of concept usages (shown as a range of a.a. residue ids) in SCOP(v2.05) domains, along with their brief legend taken from SCOP
d4knsa2 : (GLY257) (MET291) [view usage] : b.6.1.0 |Cupredoxin-like |Cupredoxins |automated matches |automated matches |Nitrosomonas europaea [TaxId: 228410]
d2gjya_ : (GLY5) (ILE45) [view usage] : b.55.1.2 |PH domain-like barrel |PH domain-like |Phosphotyrosine-binding domain (PTB) |automated matches |Chicken (Gallus gallus) [TaxId: 9031]
d2c6qb_ : (GLU254) (GLU294) [view usage] : c.1.5.0 |TIM beta/alpha-barrel |Inosine monophosphate dehydrogenase (IMPDH) |automated matches |automated matches |Human (Homo sapiens) [TaxId: 9606]
d1qjzb_ : (VAL73) (GLY120) [view usage] : b.121.4.6 |Nucleoplasmin-like/VP (viral coat and capsid proteins) |Positive stranded ssRNA viruses |Tymoviridae-like VP |Tymovirus coat protein |PHMV (Physalis mottle virus) [TaxId: 72539]
d1f56a_ : (ASP61) (ASN89) [view usage] : b.6.1.1 |Cupredoxin-like |Cupredoxins |Plastocyanin/azurin-like |Plantacyanin |Spinach (Spinacia oleracea) [TaxId: 3562]
d1e54a_ : (ASN136) (GLY181) [view usage] : f.4.3.1 |Transmembrane beta-barrels |Porins |Porin |Porin |Comamonas acidovorans [TaxId: 80866]
d2vngb_ : (LYS140) (LEU172) [view usage] : b.18.1.33 |Galactose-binding domain-like |Galactose-binding domain-like |NPCBM-like |automated matches |Clostridium perfringens [TaxId: 1502]
d1upsa1 : (GLY129) (LEU172) [view usage] : b.29.1.2 |Concanavalin A-like lectins/glucanases |Concanavalin A-like lectins/glucanases |Glycosyl hydrolases family 16 |GlcNAc-alpha-1,4-Gal-releasing endo-beta-galactosidase, GngC, catalytic domain |Clostridium perfringens [TaxId: 1502]
d2a7la1 : (SER33) (THR74) [view usage] : d.20.1.1 |UBC-like |UBC-like |UBC-related |Ubiquitin-protein ligase W (E2 W) |Human (Homo sapiens) [TaxId: 9606]
d4akpa3 : (GLU473) (ILE508) [view usage] : b.6.1.0 |Cupredoxin-like |Cupredoxins |automated matches |automated matches |Bacillus subtilis [TaxId: 1423]
d2i6va1 : (ARG226) (ALA263) [view usage] : b.36.1.5 |PDZ domain-like |PDZ domain-like |EpsC C-terminal domain-like |General secretion pathway protein C, EpsC |Vibrio cholerae [TaxId: 666]
d2gfqb_ : (LYS188) (GLY216) [view usage] : c.56.7.1 |Phosphorylase/hydrolase-like |AF0625-like |AF0625-like |Hypothetical protein PH0006 |Pyrococcus horikoshii [TaxId: 53953]
d3d12b_ : (LEU111) (VAL167) [view usage] : b.6.1.0 |Cupredoxin-like |Cupredoxins |automated matches |automated matches |Mouse (Mus musculus) [TaxId: 10090]
d1uwwa_ : (THR40) (LYS78) [view usage] : b.18.1.23 |Galactose-binding domain-like |Galactose-binding domain-like |Family 28 carbohydrate binding module, CBM28 |Endoglucanase (alkaline cellulase) |Bacillus sp. 1139 [TaxId: 1411]
d2mj8a_ : (ASP14) (PRO41) [view usage] : b.34.13.2 |SH3-like barrel |Chromo domain-like |Chromo domain |automated matches |Human (Homo sapiens) [TaxId: 9606]
d1cjwa_ : (LEU80) (HIS127) [view usage] : d.108.1.1 |Acyl-CoA N-acyltransferases (Nat) |Acyl-CoA N-acyltransferases (Nat) |N-acetyl transferase, NAT |Serotonin N-acetyltranferase |Sheep (Ovis aries) [TaxId: 9940]
d1cura_ : (GLY121) (VAL154) [view usage] : b.6.1.1 |Cupredoxin-like |Cupredoxins |Plastocyanin/azurin-like |Rusticyanin |Thiobacillus ferrooxidans [TaxId: 920]
d2a0ua1 : (SER20) (ASP44) [view usage] : c.124.1.5 |NagB/RpiA/CoA transferase-like |NagB/RpiA/CoA transferase-like |IF2B-like |Initiation factor 2b |Leishmania major [TaxId: 5664]
d2a0ua1 : (ASP265) (PRO298) [view usage] : c.124.1.5 |NagB/RpiA/CoA transferase-like |NagB/RpiA/CoA transferase-like |IF2B-like |Initiation factor 2b |Leishmania major [TaxId: 5664]
d3acfa_ : (SER50) (LEU86) [view usage] : b.18.1.0 |Galactose-binding domain-like |Galactose-binding domain-like |automated matches |automated matches |Clostridium josui [TaxId: 1499]
d1ploa_ : (LYS101) (PHE126) [view usage] : g.7.1.3 |Snake toxin-like |Snake toxin-like |Extracellular domain of cell surface receptors |TGF-beta type II receptor extracellular domain |Human (Homo sapiens) [TaxId: 9606]
d1dhna_ : (MET1) (LYS36) [view usage] : d.96.1.3 |T-fold |Tetrahydrobiopterin biosynthesis enzymes-like |DHN aldolase/epimerase |7,8-dihydroneopterin aldolase |Staphylococcus aureus [TaxId: 1280]
d1g6ga_ : (CYS34) (GLY69) [view usage] : b.26.1.2 |SMAD/FHA domain |SMAD/FHA domain |FHA domain |Phosphotyrosine binding domain of Rad53 |Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
d2cbpa_ : (ASP66) (ASN94) [view usage] : b.6.1.1 |Cupredoxin-like |Cupredoxins |Plastocyanin/azurin-like |Plantacyanin |Cucumber (Cucumis sativus) [TaxId: 3659]
d2a0ub_ : (SER20) (ASP44) [view usage] : c.124.1.5 |NagB/RpiA/CoA transferase-like |NagB/RpiA/CoA transferase-like |IF2B-like |Initiation factor 2b |Leishmania major [TaxId: 5664]
d2o39a1 : (LEU158) (ASP200) [view usage] : b.21.1.1 |Virus attachment protein globular domain |Virus attachment protein globular domain |Adenovirus fiber protein "knob" domain |Adenovirus fiber protein "knob" domain |Human adenovirus type 11P [TaxId: 343462]
d1gw0a3 : (GLY485) (GLU519) [view usage] : b.6.1.3 |Cupredoxin-like |Cupredoxins |Multidomain cupredoxins |Laccase |Fungus (Melanocarpus albomyces) [TaxId: 204285]
d2l5pa_ : (HIS97) (VAL132) [view usage] : b.60.1.0 |Lipocalins |Lipocalins |automated matches |automated matches |Norway rat (Rattus norvegicus) [TaxId: 10116]
d2j71a1 : (GLU6) (PHE42) [view usage] : b.3.1.3 |Prealbumin-like |Starch-binding domain-like |PUD-like |Pullulanase PulA |Thermotoga maritima [TaxId: 2336]
d1qiua1 : (THR422) (ASP462) [view usage] : b.21.1.1 |Virus attachment protein globular domain |Virus attachment protein globular domain |Adenovirus fiber protein "knob" domain |Adenovirus fiber protein "knob" domain |Human adenovirus type 2 [TaxId: 10515]
d2gfqa1 : (LYS188) (GLY216) [view usage] : c.56.7.1 |Phosphorylase/hydrolase-like |AF0625-like |AF0625-like |Hypothetical protein PH0006 |Pyrococcus horikoshii [TaxId: 53953]
d1ijaa_ : (GLY16) (PHE64) [view usage] : b.100.1.1 |Sortase |Sortase |Sortase |Sortase A |Staphylococcus aureus [TaxId: 1280]
d2dmfa1 : (SER38) (ASN82) [view usage] : d.20.1.3 |UBC-like |UBC-like |RWD domain |E3 ubiquitin-protein ligase RNF25 |Human (Homo sapiens) [TaxId: 9606]
d1kdka_ : (THR40) (GLY70) [view usage] : b.29.1.4 |Concanavalin A-like lectins/glucanases |Concanavalin A-like lectins/glucanases |Laminin G-like module |Sex hormone-binding globulin |Human (Homo sapiens) [TaxId: 9606]
d1jera_ : (PRO74) (ALA107) [view usage] : b.6.1.1 |Cupredoxin-like |Cupredoxins |Plastocyanin/azurin-like |Stellacyanin |Cucumber (Cucumis sativus) [TaxId: 3659]
d2djsa1 : (ILE24) (GLN61) [view usage] : b.1.2.1 |Immunoglobulin-like beta-sandwich |Fibronectin type III |Fibronectin type III |Ephrin type-B receptor 1 |Human (Homo sapiens) [TaxId: 9606]
d4dhlc2 : (HIS389) (TRP419) [view usage] : d.159.1.1 |Metallo-dependent phosphatases |Metallo-dependent phosphatases |Purple acid phosphatase-like |automated matches |French bean (Phaseolus vulgaris) [TaxId: 3885]
d1sqla_ : (LEU4) (TRP35) [view usage] : d.96.1.3 |T-fold |Tetrahydrobiopterin biosynthesis enzymes-like |DHN aldolase/epimerase |7,8-dihydroneopterin aldolase |Thale cress (Arabidopsis thaliana) [TaxId: 3702]
d4mzmd_ : (GLY5) (GLY48) [view usage] : b.34.6.2 |SH3-like barrel |Cell growth inhibitor/plasmid maintenance toxic component |Kid/PemK |automated matches |Staphylococcus aureus [TaxId: 158879]
d1t2oc_ : (GLY74) (GLY119) [view usage] : b.100.1.1 |Sortase |Sortase |Sortase |Sortase A |Staphylococcus aureus [TaxId: 1280]
d1g6gb_ : (CYS34) (GLY69) [view usage] : b.26.1.2 |SMAD/FHA domain |SMAD/FHA domain |FHA domain |Phosphotyrosine binding domain of Rad53 |Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
d2ogbb_ : (VAL276) (ALA311) [view usage] : d.345.1.1 |NRDP1 C-terminal domain-like |NRDP1 C-terminal domain-like |USP8 interacting domain |E3 ubiquitin-protein ligase NRDP1 |Human (Homo sapiens) [TaxId: 9606]
d1t8ha_ : (ILE4) (LYS30) [view usage] : d.194.1.2 |CNF1/YfiH-like putative cysteine hydrolases |CNF1/YfiH-like putative cysteine hydrolases |YfiH-like |Hypothetical protein YlmD |Bacillus stearothermophilus [TaxId: 1422]
d1b6ba_ : (LEU80) (HIS127) [view usage] : d.108.1.1 |Acyl-CoA N-acyltransferases (Nat) |Acyl-CoA N-acyltransferases (Nat) |N-acetyl transferase, NAT |Serotonin N-acetyltranferase |Sheep (Ovis aries) [TaxId: 9940]
d2j85b_ : (GLU72) (HIS117) [view usage] : d.321.1.1 |STIV B116-like |STIV B116-like |STIV B116-like |automated matches |Sulfolobus turreted icosahedral virus [TaxId: 269145]
d1ulta_ : (GLY180) (GLY244) [view usage] : e.23.1.1 |Acetyl-CoA synthetase-like |Acetyl-CoA synthetase-like |Acetyl-CoA synthetase-like |Long chain fatty acid-CoA ligase TT0168 |Thermus thermophilus [TaxId: 274]
List of distinct SCOP folds where this concept is used (in one or more of its domains):
c.1, d.159, b.29, c.56, c.124, f.4, b.60, b.18, d.194, b.121, d.96, b.6, b.1, e.23, d.108, d.20, b.21, b.55, b.26, b.34,
b.3, b.36, g.7, b.100, d.345, d.321