Tableau information
Concept source: d1mqkh_ amino acid (a.a.) range (VAL48)(ASP73)
nSSEs in this Concept: 4
String of secondary struct.elems. (SSEs) defining this concept: EEHE
Each SSE's a.a.range: (start resi) (end resi) SSEtype (H=Helix; E=Strand) followed by a numeric SSE ID:
(VAL48) (ASN52) E1
(GLY56) (PRO61) E2
(PRO61) (ARG67) H3
(ARG67) (ASP73) E4
Orientation angles° of SSE-pairs; those in contact shown in bold font
E1
E2 157.2° E2
H3 -75.6° 125.8° H3
E4 -35.7° 146.1° -76.9°
Footnote: Inferred from this concept's usages (listed below) was the angular variance of 1σ = ±12.7° about each orientation angle shown above.
Loci of concept usages (shown as a range of a.a. residue ids) in SCOP(v2.05) domains, along with their brief legend taken from SCOP
d2jova1 : (HIS2) (CYS69) [view usage] : d.349.1.1 |CPE0013-like |CPE0013-like |CPE0013-like |Hypothetical protein CPE0013 |Clostridium perfringens [TaxId: 1502]
d3rrma1 : (LYS205) (GLN231) [view usage] : c.37.1.0 |P-loop containing nucleoside triphosphate hydrolases |P-loop containing nucleoside triphosphate hydrolases |automated matches |automated matches |Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
d3g1ka_ : (GLY70) (ASP101) [view usage] : d.151.1.0 |DNase I-like |DNase I-like |automated matches |automated matches |Methanothermobacter thermautotrophicus [TaxId: 187420]
d3pewa1 : (LYS205) (GLN231) [view usage] : c.37.1.0 |P-loop containing nucleoside triphosphate hydrolases |P-loop containing nucleoside triphosphate hydrolases |automated matches |automated matches |Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
d1svpa_ : (LYS135) (LYS158) [view usage] : b.47.1.3 |Trypsin-like serine proteases |Trypsin-like serine proteases |Viral proteases |Viral capsid protein |Sindbis virus [TaxId: 11034]
d1p0ra_ : (MET1) (TYR72) [view usage] : d.15.1.1 |beta-Grasp (ubiquitin-like) |Ubiquitin-like |Ubiquitin-related |Ubiquitin-like protein 5, ubl5 |Human (Homo sapiens) [TaxId: 9606]
d1eyza1 : (ASP347) (GLY392) [view usage] : b.84.2.1 |Barrel-sandwich hybrid |Rudiment single hybrid motif |BC C-terminal domain-like |Glycinamide ribonucleotide transformylase PurT, C-domain |Escherichia coli [TaxId: 562]
d4gsdl1 : (LEU5) (GLN37) [view usage] : b.1.1.0 |Immunoglobulin-like beta-sandwich |Immunoglobulin |automated matches |automated matches |Human (Homo sapiens) [TaxId: 9606]
d3ebaa_ : (GLY41) (SER68) [view usage] : b.1.1.1 |Immunoglobulin-like beta-sandwich |Immunoglobulin |V set domains (antibody variable domain-like) |automated matches |Camel (Camelus dromedarius) [TaxId: 9838]
d1d8ta3 : (ASN63) (ASP99) [view usage] : c.37.1.8 |P-loop containing nucleoside triphosphate hydrolases |P-loop containing nucleoside triphosphate hydrolases |G proteins |Elongation factor Tu (EF-Tu), N-terminal (G) domain |Escherichia coli [TaxId: 562]
d2aoqa_ : (GLY75) (GLU126) [view usage] : c.52.1.14 |Restriction endonuclease-like |Restriction endonuclease-like |DNA mismatch repair protein MutH from |automated matches |Haemophilus influenzae [TaxId: 727]
d2cv9a1 : (GLY96) (ASP138) [view usage] : d.159.1.10 |Metallo-dependent phosphatases |Metallo-dependent phosphatases |TTHA0625-like |Hypothetical protein TTHA0625 |Thermus thermophilus [TaxId: 274]
d2vnga1 : (LYS140) (LEU172) [view usage] : b.18.1.33 |Galactose-binding domain-like |Galactose-binding domain-like |NPCBM-like |Uncharacterized protein CPE0329 |Clostridium perfringens [TaxId: 1502]
d1vhea1 : (GLY73) (THR107) [view usage] : b.49.3.1 |Domain of alpha and beta subunits of F1 ATP synthase-like |Aminopeptidase/glucanase lid domain |Aminopeptidase/glucanase lid domain |Hypothetical protein YsdC |Bacillus subtilis [TaxId: 1423]
d2fbwb1 : (LYS12) (PRO101) [view usage] : d.15.4.2 |beta-Grasp (ubiquitin-like) |2Fe-2S ferredoxin-like |2Fe-2S ferredoxin domains from multidomain proteins |Succinate dehydogenase iron-sulfur protein, N-terminal domain |Chicken (Gallus gallus) [TaxId: 9031]
d1t2pa_ : (SER70) (PHE122) [view usage] : b.100.1.1 |Sortase |Sortase |Sortase |Sortase A |Staphylococcus aureus [TaxId: 1280]
d1r0va3 : (ILE149) (SER182) [view usage] : d.75.1.1 |MutS N-terminal domain-like |tRNA-intron endonuclease N-terminal domain-like |tRNA-intron endonuclease N-terminal domain-like |Dimeric tRNA splicing endonuclease, domains 1 and 3 |Archaeoglobus fulgidus [TaxId: 2234]
d1oqya4 : (SER1) (THR77) [view usage] : d.15.1.1 |beta-Grasp (ubiquitin-like) |Ubiquitin-like |Ubiquitin-related |Ubiquitin-like domain of Rad23 homolog A (Hhr23a) |Human (Homo sapiens) [TaxId: 9606]
d1w17a_ : (TRP31) (LEU60) [view usage] : c.6.2.3 |7-stranded beta/alpha barrel |Glycoside hydrolase/deacetylase |NodB-like polysaccharide deacetylase |automated matches |Bacillus subtilis [TaxId: 1423]
d2fyha_ : (HIS71) (GLY129) [view usage] : d.61.1.0 |LigT-like |LigT-like |automated matches |automated matches |Pyrococcus furiosus [TaxId: 186497]
d1zoyb1 : (PRO9) (PRO101) [view usage] : d.15.4.2 |beta-Grasp (ubiquitin-like) |2Fe-2S ferredoxin-like |2Fe-2S ferredoxin domains from multidomain proteins |Succinate dehydogenase iron-sulfur protein, N-terminal domain |Pig (Sus scrofa) [TaxId: 9823]
d2jffa2 : (PHE303) (GLY337) [view usage] : c.59.1.0 |MurD-like peptide ligases, peptide-binding domain |MurD-like peptide ligases, peptide-binding domain |automated matches |automated matches |Escherichia coli [TaxId: 562]
d2xzm4_ : (ARG28) (THR71) [view usage] : i.1.1.3 |Ribosome and ribosomal fragments |Ribosome and ribosomal fragments |Small subunit |Eukaryotic, cytoplasmic (40S subunit) |Tetrahymena thermophila [TaxId: 5911]
d1bteb_ : (CYS72) (PRO99) [view usage] : g.7.1.3 |Snake toxin-like |Snake toxin-like |Extracellular domain of cell surface receptors |Type II activin receptor |Mouse (Mus musculus) [TaxId: 10090]
d1o75a2 : (ASN338) (ALA367) [view usage] : b.1.20.1 |Immunoglobulin-like beta-sandwich |Tp47 lipoprotein, middle and C-terminal domains |Tp47 lipoprotein, middle and C-terminal domains |Tp47 lipoprotein, middle and C-terminal domains |Treponema pallidum [TaxId: 160]
d1ksra_ : (GLY63) (LYS98) [view usage] : b.1.18.10 |Immunoglobulin-like beta-sandwich |E set domains |Filamin repeat (rod domain) |F-actin cross-linking gelation factor (ABP-120) repeats |Slime mold (Dictyostelium discoideum) [TaxId: 44689]
d2z06a_ : (GLY96) (ASP138) [view usage] : d.159.1.10 |Metallo-dependent phosphatases |Metallo-dependent phosphatases |TTHA0625-like |Hypothetical protein TTHA0625 |Thermus thermophilus [TaxId: 274]
d1ar1c_ : (VAL48) (ASP73) [view usage] : b.1.1.1 |Immunoglobulin-like beta-sandwich |Immunoglobulin |V set domains (antibody variable domain-like) |Immunoglobulin heavy chain variable domain, VH |Mouse (Mus musculus), cluster 2.2 [TaxId: 10090]
d1kf6b2 : (ALA1) (ALA92) [view usage] : d.15.4.2 |beta-Grasp (ubiquitin-like) |2Fe-2S ferredoxin-like |2Fe-2S ferredoxin domains from multidomain proteins |Fumarate reductase iron-sulfur protein, N-terminal domain |Escherichia coli [TaxId: 562]
d3g00b_ : (GLY70) (ASP101) [view usage] : d.151.1.0 |DNase I-like |DNase I-like |automated matches |automated matches |Methanothermobacter thermautotrophicus [TaxId: 187420]
List of distinct SCOP folds where this concept is used (in one or more of its domains):
d.159, c.6, i.1, b.47, c.37, d.151, b.18, b.1, b.84, c.59, c.52, d.15, b.49, g.7, b.100, d.61, d.75, d.349