Tableau information
Concept source: d3dbli_ amino acid (a.a.) range (MET101)(SER146)
nSSEs in this Concept: 4
String of secondary struct.elems. (SSEs) defining this concept: EEHE
Each SSE's a.a.range: (start resi) (end resi) SSEtype (H=Helix; E=Strand) followed by a numeric SSE ID:
(MET101) (THR107) E1
(LYS111) (ASP116) E2
(LYS122) (LYS133) H3
(GLN141) (SER146) E4
Orientation angles° of SSE-pairs; those in contact shown in bold font
E1
E2 155.8° E2
H3 -63.7° 125.7° H3
E4 111.8° -84.4° 117.9°
Footnote: Inferred from this concept's usages (listed below) was the angular variance of 1σ = ±8.8° about each orientation angle shown above.
Loci of concept usages (shown as a range of a.a. residue ids) in SCOP(v2.05) domains, along with their brief legend taken from SCOP
d1wf9a1 : (THR8) (THR52) [view usage] : d.15.1.1 |beta-Grasp (ubiquitin-like) |Ubiquitin-like |Ubiquitin-related |NPL4-like protein 1 |Thale cress (Arabidopsis thaliana) [TaxId: 3702]
d3qx1a_ : (PRO572) (THR618) [view usage] : d.15.1.2 |beta-Grasp (ubiquitin-like) |Ubiquitin-like |UBX domain |automated matches |Human (Homo sapiens) [TaxId: 9606]
d2jz3b_ : (VAL3) (ASP47) [view usage] : d.15.1.1 |beta-Grasp (ubiquitin-like) |Ubiquitin-like |Ubiquitin-related |automated matches |Human (Homo sapiens) [TaxId: 9606]
d1fxia_ : (ALA1) (VAL52) [view usage] : d.15.4.1 |beta-Grasp (ubiquitin-like) |2Fe-2S ferredoxin-like |2Fe-2S ferredoxin-related |2Fe-2S ferredoxin |Aphanothece sacrum [TaxId: 1122]
d3r3ma_ : (GLU571) (PHE619) [view usage] : d.15.1.2 |beta-Grasp (ubiquitin-like) |Ubiquitin-like |UBX domain |automated matches |Human (Homo sapiens) [TaxId: 9606]
d3wcqa_ : (TYR2) (VAL53) [view usage] : d.15.4.1 |beta-Grasp (ubiquitin-like) |2Fe-2S ferredoxin-like |2Fe-2S ferredoxin-related |automated matches |Cyanidioschyzon merolae [TaxId: 45157]
d1v5ta_ : (PRO9) (GLY52) [view usage] : d.15.1.1 |beta-Grasp (ubiquitin-like) |Ubiquitin-like |Ubiquitin-related |8430435i17rik protein |Mouse (Mus musculus) [TaxId: 10090]
d4jghb_ : (PHE4) (LYS46) [view usage] : d.15.1.1 |beta-Grasp (ubiquitin-like) |Ubiquitin-like |Ubiquitin-related |automated matches |Mouse (Mus musculus) [TaxId: 10090]
d2kdba_ : (VAL2) (SER51) [view usage] : d.15.1.0 |beta-Grasp (ubiquitin-like) |Ubiquitin-like |automated matches |automated matches |Human (Homo sapiens) [TaxId: 9606]
d1e6ed_ : (ILE7) (GLN61) [view usage] : d.15.4.1 |beta-Grasp (ubiquitin-like) |2Fe-2S ferredoxin-like |2Fe-2S ferredoxin-related |Adrenodoxin |Cow (Bos taurus) [TaxId: 9913]
d4eh1a1 : (ARG67) (ASP108) [view usage] : b.43.4.0 |Reductase/isomerase/elongation factor common domain |Riboflavin synthase domain-like |automated matches |automated matches |Vibrio cholerae [TaxId: 243277]
d3dblj_ : (MET101) (SER146) [view usage] : d.15.1.1 |beta-Grasp (ubiquitin-like) |Ubiquitin-like |Ubiquitin-related |Nedd8 |Human (Homo sapiens) [TaxId: 9606]
d1ndda_ : (MET1) (SER46) [view usage] : d.15.1.1 |beta-Grasp (ubiquitin-like) |Ubiquitin-like |Ubiquitin-related |Nedd8 |Human (Homo sapiens) [TaxId: 9606]
d3lzga_ : (SER83) (ARG117) [view usage] : b.19.1.2 |Viral protein domain |Viral protein domain |Influenza hemagglutinin headpiece |Hemagglutinin |Influenza A virus, different strains [TaxId: 11320]
d1iyfa_ : (MET1) (ALA46) [view usage] : d.15.1.1 |beta-Grasp (ubiquitin-like) |Ubiquitin-like |Ubiquitin-related |Ubiquitin-like domain of parkin |Human (Homo sapiens) [TaxId: 9606]
d2g98a2 : (HIS87) (SER122) [view usage] : b.11.1.1 |gamma-Crystallin-like |gamma-Crystallin-like |Crystallins/Ca-binding development proteins |automated matches |Human (Homo sapiens) [TaxId: 9606]
d3b2fa_ : (TYR3) (VAL52) [view usage] : d.15.4.1 |beta-Grasp (ubiquitin-like) |2Fe-2S ferredoxin-like |2Fe-2S ferredoxin-related |2Fe-2S ferredoxin |Maize (Zea mays) [TaxId: 4577]
d1ssna_ : (GLY22) (GLU80) [view usage] : d.15.5.1 |beta-Grasp (ubiquitin-like) |Staphylokinase/streptokinase |Staphylokinase/streptokinase |Staphylokinase |Staphylococcus aureus [TaxId: 1280]
d4macb_ : (CYS45) (LEU85) [view usage] : d.15.2.0 |beta-Grasp (ubiquitin-like) |CAD & PB1 domains |automated matches |automated matches |Mouse (Mus musculus) [TaxId: 10090]
d2mh7a_ : (LYS2) (ALA51) [view usage] : d.15.4.0 |beta-Grasp (ubiquitin-like) |2Fe-2S ferredoxin-like |automated matches |automated matches |Green alga (Chlamydomonas reinhardtii) [TaxId: 3055]
d3av8a_ : (ALA1) (VAL52) [view usage] : d.15.4.1 |beta-Grasp (ubiquitin-like) |2Fe-2S ferredoxin-like |2Fe-2S ferredoxin-related |automated matches |Aphanothece sacrum [TaxId: 1122]
d1xm8a_ : (THR132) (GLY168) [view usage] : d.157.1.2 |Metallo-hydrolase/oxidoreductase |Metallo-hydrolase/oxidoreductase |Glyoxalase II (hydroxyacylglutathione hydrolase) |Glyoxalase II (hydroxyacylglutathione hydrolase) |Thale cress (Arabidopsis thaliana) [TaxId: 3702]
d1b9ra_ : (PRO1) (GLU53) [view usage] : d.15.4.1 |beta-Grasp (ubiquitin-like) |2Fe-2S ferredoxin-like |2Fe-2S ferredoxin-related |2Fe-2S ferredoxin |Pseudomonas sp., terpredoxin [TaxId: 306]
d3r3mb_ : (PRO572) (PHE619) [view usage] : d.15.1.2 |beta-Grasp (ubiquitin-like) |Ubiquitin-like |UBX domain |automated matches |Human (Homo sapiens) [TaxId: 9606]
d3p1mf_ : (ILE67) (ASP121) [view usage] : d.15.4.1 |beta-Grasp (ubiquitin-like) |2Fe-2S ferredoxin-like |2Fe-2S ferredoxin-related |automated matches |Human (Homo sapiens) [TaxId: 9606]
d1afwb1 : (GLU86) (MET155) [view usage] : c.95.1.1 |Thiolase-like |Thiolase-like |Thiolase-related |Thiolase |Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
d2fazb_ : (MET1) (LEU72) [view usage] : d.15.1.0 |beta-Grasp (ubiquitin-like) |Ubiquitin-like |automated matches |automated matches |Human (Homo sapiens) [TaxId: 9606]
d3zkjf_ : (PHE4) (LYS46) [view usage] : d.15.1.1 |beta-Grasp (ubiquitin-like) |Ubiquitin-like |Ubiquitin-related |automated matches |Human (Homo sapiens) [TaxId: 9606]
d3r3mc_ : (GLU571) (PHE619) [view usage] : d.15.1.2 |beta-Grasp (ubiquitin-like) |Ubiquitin-like |UBX domain |automated matches |Human (Homo sapiens) [TaxId: 9606]
List of distinct SCOP folds where this concept is used (in one or more of its domains):
b.19, d.157, c.95, b.11, d.15, b.43