Tableau information
Concept source: d4a19m_ amino acid (a.a.) range (ILE56)(SER99)
nSSEs in this Concept: 4
String of secondary struct.elems. (SSEs) defining this concept: EEHE
Each SSE's a.a.range: (start resi) (end resi) SSEtype (H=Helix; E=Strand) followed by a numeric SSE ID:
(ILE56) (ASP62) E1
(LYS64) (THR70) E2
(LYS75) (GLN89) H3
(LEU95) (SER99) E4
Orientation angles° of SSE-pairs; those in contact shown in bold font
E1
E2 165.0° E2
H3 -51.4° 141.4° H3
E4 124.5° -42.9° 175.7°
Footnote: Inferred from this concept's usages (listed below) was the angular variance of 1σ = ±13.0° about each orientation angle shown above.
Loci of concept usages (shown as a range of a.a. residue ids) in SCOP(v2.05) domains, along with their brief legend taken from SCOP
d1vixa2 : (ALA264) (GLU316) [view usage] : d.58.19.1 |Ferredoxin-like |Bacterial exopeptidase dimerisation domain |Bacterial exopeptidase dimerisation domain |Peptidase T (tripeptidase) |Escherichia coli [TaxId: 562]
d1a2za_ : (ARG29) (LEU70) [view usage] : c.56.4.1 |Phosphorylase/hydrolase-like |Pyrrolidone carboxyl peptidase (pyroglutamate aminopeptidase) |Pyrrolidone carboxyl peptidase (pyroglutamate aminopeptidase) |Pyrrolidone carboxyl peptidase (pyroglutamate aminopeptidase) |Thermococcus litoralis [TaxId: 2265]
d3u5eu_ : (ALA53) (TYR108) [view usage] : i.1.1.1 |Ribosome and ribosomal fragments |Ribosome and ribosomal fragments |Ribosome complexes |Eukaryotic, cytoplasmic (80S ribosome functional complex) |Saccharomyces cerevisiae [TaxId: 559292]
d3mhyb_ : (GLU32) (ASP95) [view usage] : d.58.5.1 |Ferredoxin-like |GlnB-like |Prokaryotic signal transducing protein |automated matches |Azospirillum brasilense [TaxId: 192]
d3ncra_ : (ASP32) (PRO95) [view usage] : d.58.5.0 |Ferredoxin-like |GlnB-like |automated matches |automated matches |Archaeoglobus fulgidus [TaxId: 2234]
d4hnfb_ : (GLY21) (TRP70) [view usage] : d.144.1.7 |Protein kinase-like (PK-like) |Protein kinase-like (PK-like) |Protein kinases, catalytic subunit |Casein kinase-1, CK1 |Human (Homo sapiens) [TaxId: 9606]
d1kooa2 : (GLU151) (SER193) [view usage] : d.58.7.2 |Ferredoxin-like |RNA-binding domain, RBD |Non-canonical RBD domain |mRNA export factor tap |Human (Homo sapiens) [TaxId: 9606]
d1vs5j1 : (ARG45) (SER101) [view usage] : d.58.15.1 |Ferredoxin-like |Ribosomal protein S10 |Ribosomal protein S10 |Ribosomal protein S10 |Escherichia coli [TaxId: 562]
d2afkh_ : (LEU76) (LEU127) [view usage] : c.37.1.10 |P-loop containing nucleoside triphosphate hydrolases |P-loop containing nucleoside triphosphate hydrolases |Nitrogenase iron protein-like |Nitrogenase iron protein |Azotobacter vinelandii [TaxId: 354]
d1x4fa1 : (LYS54) (LEU98) [view usage] : d.58.7.1 |Ferredoxin-like |RNA-binding domain, RBD |Canonical RBD |Matrin 3 |Mouse (Mus musculus) [TaxId: 10090]
d2mksa_ : (VAL37) (GLN85) [view usage] : d.58.7.0 |Ferredoxin-like |RNA-binding domain, RBD |automated matches |automated matches |Human (Homo sapiens) [TaxId: 9606]
d1l3sa2 : (LEU825) (SER870) [view usage] : e.8.1.1 |DNA/RNA polymerases |DNA/RNA polymerases |DNA polymerase I |DNA polymerase I (Klenow fragment) |Bacillus stearothermophilus, newly identified strain as yet unnamed [TaxId: 1422]
d1usyg_ : (ILE32) (GLY64) [view usage] : c.94.1.1 |Periplasmic binding protein-like II |Periplasmic binding protein-like II |Phosphate binding protein-like |ATP phosphoribosyltransferase (ATP-PRTase, HisG), catalytic domain |Thermotoga maritima [TaxId: 2336]
d1z7nf1 : (LEU36) (VAL68) [view usage] : c.94.1.1 |Periplasmic binding protein-like II |Periplasmic binding protein-like II |Phosphate binding protein-like |ATP phosphoribosyltransferase (ATP-PRTase, HisG), catalytic domain |Lactococcus lactis [TaxId: 1358]
d1rtza_ : (SER38) (ILE98) [view usage] : d.58.30.1 |Ferredoxin-like |6-hydroxymethyl-7,8-dihydropterin pyrophosphokinase, HPPK |6-hydroxymethyl-7,8-dihydropterin pyrophosphokinase, HPPK |6-hydroxymethyl-7,8-dihydropterin pyrophosphokinase, HPPK |Escherichia coli [TaxId: 562]
d1wf2a_ : (VAL44) (LEU84) [view usage] : d.58.7.1 |Ferredoxin-like |RNA-binding domain, RBD |Canonical RBD |Heterogeneous nuclear ribonucleoproteins C1/C2 |Human (Homo sapiens) [TaxId: 9606]
d1s12c_ : (LYS244) (VAL289) [view usage] : d.64.2.1 |eIF1-like |TM1457-like |TM1457-like |Hypothetical protein TM1457 |Thermotoga maritima [TaxId: 2336]
d1visa2 : (PHE269) (ASN307) [view usage] : d.58.26.3 |Ferredoxin-like |GHMP Kinase, C-terminal domain |Mevalonate kinase |Mevalonate kinase |Methanococcus jannaschii [TaxId: 2190]
d2c8va_ : (LEU76) (VAL126) [view usage] : c.37.1.10 |P-loop containing nucleoside triphosphate hydrolases |P-loop containing nucleoside triphosphate hydrolases |Nitrogenase iron protein-like |Nitrogenase iron protein |Azotobacter vinelandii [TaxId: 354]
d2p90b_ : (HIS94) (PRO142) [view usage] : c.56.8.1 |Phosphorylase/hydrolase-like |Cgl1923-like |Cgl1923-like |Hypothetical protein Cgl1923 |Corynebacterium glutamicum [TaxId: 1718]
d1oo0b_ : (ASN101) (TRP148) [view usage] : d.58.7.1 |Ferredoxin-like |RNA-binding domain, RBD |Canonical RBD |RNA-binding protein 8 |Fruit fly (Drosophila melanogaster) [TaxId: 7227]
d2zchp_ : (THR134) (LYS178) [view usage] : b.47.1.2 |Trypsin-like serine proteases |Trypsin-like serine proteases |Eukaryotic proteases |automated matches |Human (Homo sapiens) [TaxId: 9606]
d1s48a_ : (ALA441) (ARG490) [view usage] : e.8.1.4 |DNA/RNA polymerases |DNA/RNA polymerases |RNA-dependent RNA-polymerase |Viral RNA polymerase |Bovine viral diarrhea virus [TaxId: 11099]
d2afkg_ : (LEU76) (LEU127) [view usage] : c.37.1.10 |P-loop containing nucleoside triphosphate hydrolases |P-loop containing nucleoside triphosphate hydrolases |Nitrogenase iron protein-like |Nitrogenase iron protein |Azotobacter vinelandii [TaxId: 354]
d1b9ha_ : (ASP286) (ALA325) [view usage] : c.67.1.4 |PLP-dependent transferase-like |PLP-dependent transferases |GABA-aminotransferase-like |3-amino-5-hydroxybenzoic acid synthase (AHBA synthase) |Amycolatopsis mediterranei [TaxId: 33910]
d1t95a3 : (ARG196) (LYS234) [view usage] : d.58.11.3 |Ferredoxin-like |EF-G C-terminal domain-like |Hypothetical protein AF0491, C-terminal domain |Hypothetical protein AF0491, C-terminal domain |Archaeoglobus fulgidus [TaxId: 2234]
d1h3da1 : (LEU39) (ILE72) [view usage] : c.94.1.1 |Periplasmic binding protein-like II |Periplasmic binding protein-like II |Phosphate binding protein-like |ATP phosphoribosyltransferase (ATP-PRTase, HisG), catalytic domain |Escherichia coli [TaxId: 562]
d2idlb_ : (ILE57) (VAL110) [view usage] : d.64.2.1 |eIF1-like |TM1457-like |TM1457-like |automated matches |Streptococcus pneumoniae [TaxId: 170187]
d1s12a_ : (LYS44) (GLY93) [view usage] : d.64.2.1 |eIF1-like |TM1457-like |TM1457-like |Hypothetical protein TM1457 |Thermotoga maritima [TaxId: 2336]
d1s4fa_ : (ALA441) (ARG490) [view usage] : e.8.1.4 |DNA/RNA polymerases |DNA/RNA polymerases |RNA-dependent RNA-polymerase |Viral RNA polymerase |Bovine viral diarrhea virus [TaxId: 11099]
d4m5na_ : (SER38) (ILE98) [view usage] : d.58.30.1 |Ferredoxin-like |6-hydroxymethyl-7,8-dihydropterin pyrophosphokinase, HPPK |6-hydroxymethyl-7,8-dihydropterin pyrophosphokinase, HPPK |automated matches |Escherichia coli K-12 [TaxId: 83333]
d1pila_ : (THR26) (ASP95) [view usage] : d.58.5.1 |Ferredoxin-like |GlnB-like |Prokaryotic signal transducing protein |PII (product of glnB) |Escherichia coli [TaxId: 562]
d1a7ge_ : (SER324) (ILE372) [view usage] : d.58.8.1 |Ferredoxin-like |Viral DNA-binding domain |Viral DNA-binding domain |Papillomavirus-1 E2 protein |Human papillomavirus type 31 [TaxId: 10585]
d2cyga1 : (VAL227) (VAL262) [view usage] : c.1.8.3 |TIM beta/alpha-barrel |(Trans)glycosidases |beta-glycanases |Plant beta-glucanases |Banana (Musa acuminata), 1,3-beta-glucanase [TaxId: 4641]
d2idla1 : (ILE57) (VAL110) [view usage] : d.64.2.1 |eIF1-like |TM1457-like |TM1457-like |Hypothetical protein SP1106 |Pneumococcus (Streptococcus pneumoniae) [TaxId: 1313]
d2vd2a_ : (LEU39) (LYS74) [view usage] : c.94.1.0 |Periplasmic binding protein-like II |Periplasmic binding protein-like II |automated matches |automated matches |Bacillus subtilis [TaxId: 1423]
d1kkha2 : (PHE274) (ASN312) [view usage] : d.58.26.3 |Ferredoxin-like |GHMP Kinase, C-terminal domain |Mevalonate kinase |Mevalonate kinase |Methanococcus jannaschii [TaxId: 2190]
d1e8ca2 : (GLU343) (ASP388) [view usage] : c.59.1.1 |MurD-like peptide ligases, peptide-binding domain |MurD-like peptide ligases, peptide-binding domain |MurCDEF C-terminal domain |UDP-N-acetylmuramyl tripeptide synthetase MurE |Escherichia coli [TaxId: 562]
d1koha2 : (GLU151) (SER193) [view usage] : d.58.7.2 |Ferredoxin-like |RNA-binding domain, RBD |Non-canonical RBD domain |mRNA export factor tap |Human (Homo sapiens) [TaxId: 9606]
d4lf1a1 : (ASP69) (MET124) [view usage] : d.58.9.0 |Ferredoxin-like |RuBisCO, large subunit, small (N-terminal) domain |automated matches |automated matches |Rhodopseudomonas palustris [TaxId: 258594]
d1x4da1 : (SER44) (LEU88) [view usage] : d.58.7.1 |Ferredoxin-like |RNA-binding domain, RBD |Canonical RBD |Matrin 3 |Mouse (Mus musculus) [TaxId: 10090]
d1f9fd_ : (SER318) (GLY361) [view usage] : d.58.8.1 |Ferredoxin-like |Viral DNA-binding domain |Viral DNA-binding domain |Papillomavirus-1 E2 protein |Human papillomavirus type 18 [TaxId: 333761]
d1zr5b_ : (LEU184) (PRO216) [view usage] : c.50.1.2 |Macro domain-like |Macro domain-like |Macro domain |Histone macro-H2a1.1 |Human (Homo sapiens) [TaxId: 9606]
d2xsfa_ : (LYS67) (PRO112) [view usage] : d.58.7.0 |Ferredoxin-like |RNA-binding domain, RBD |automated matches |automated matches |Mouse (Mus musculus) [TaxId: 10090]
d3ue2a_ : (ARG495) (VAL546) [view usage] : d.58.7.0 |Ferredoxin-like |RNA-binding domain, RBD |automated matches |automated matches |Human (Homo sapiens) [TaxId: 9606]
List of distinct SCOP folds where this concept is used (in one or more of its domains):
e.8, c.1, c.67, c.94, d.58, i.1, b.47, c.56, d.144, c.37, c.50, c.59, d.64