Tableau information
Concept source: d4wh8a_ amino acid (a.a.) range (VAL995)(ASN1027)
nSSEs in this Concept: 4
String of secondary struct.elems. (SSEs) defining this concept: EEHE
Each SSE's a.a.range: (start resi) (end resi) SSEtype (H=Helix; E=Strand) followed by a numeric SSE ID:
(VAL995) (LEU1000) E1
(TYR1006) (ARG1011) E2
(GLU1013) (GLY1023) H3
(GLY1023) (ASN1027) E4
Orientation angles° of SSE-pairs; those in contact shown in bold font
E1
E2 162.2° E2
H3 109.0° 62.8° H3
E4 -45.9° 125.8° 130.7°
Footnote: Inferred from this concept's usages (listed below) was the angular variance of 1σ = ±13.0° about each orientation angle shown above.
Loci of concept usages (shown as a range of a.a. residue ids) in SCOP(v2.05) domains, along with their brief legend taken from SCOP
d2exna1 : (SER79) (LYS116) [view usage] : b.165.1.1 |MOSC N-terminal domain-like |MOSC N-terminal domain-like |MOSC N-terminal domain-like |Hypothetical protein BB0938 |Bordetella bronchiseptica [TaxId: 518]
d3gzga_ : (LEU81) (GLY118) [view usage] : c.94.1.0 |Periplasmic binding protein-like II |Periplasmic binding protein-like II |automated matches |automated matches |Xanthomonas axonopodis [TaxId: 92829]
d2izwa_ : (ASP61) (VAL113) [view usage] : b.121.4.0 |Nucleoplasmin-like/VP (viral coat and capsid proteins) |Positive stranded ssRNA viruses |automated matches |automated matches |Ryegrass mottle virus [TaxId: 119910]
d1dqva2 : (GLY513) (VAL566) [view usage] : b.7.1.2 |C2 domain-like |C2 domain (Calcium/lipid-binding domain, CaLB) |Synaptotagmin-like (S variant) |Synaptotagmin III |Norway rat (Rattus norvegicus) [TaxId: 10116]
d3zpya_ : (VAL337) (SER372) [view usage] : b.29.1.0 |Concanavalin A-like lectins/glucanases |Concanavalin A-like lectins/glucanases |automated matches |automated matches |Zobellia galactanivorans [TaxId: 63186]
d1pgw21 : (ASN83) (PHE127) [view usage] : b.121.4.2 |Nucleoplasmin-like/VP (viral coat and capsid proteins) |Positive stranded ssRNA viruses |Comoviridae-like VP |Comovirus coat proteins (VP37 and VP23) |BPMV (Bean pod mottle virus) [TaxId: 12260]
d1wp5a_ : (ASN156) (GLY187) [view usage] : b.68.10.1 |6-bladed beta-propeller |GyrA/ParC C-terminal domain-like |GyrA/ParC C-terminal domain-like |Topoisomerase IV subunit A, ParC, C-terminal domain |Bacillus stearothermophilus [TaxId: 1422]
d3qyia_ : (PRO9) (GLY30) [view usage] : d.144.1.7 |Protein kinase-like (PK-like) |Protein kinase-like (PK-like) |Protein kinases, catalytic subunit |MAP kinase Erk2 |Norway rat (Rattus norvegicus) [TaxId: 10116]
d3ilwa_ : (GLY225) (GLY255) [view usage] : e.11.1.0 |Type II DNA topoisomerase C-terminal domain-like |Type II DNA topoisomerase C-terminal domain-like |automated matches |automated matches |Mycobacterium tuberculosis [TaxId: 1773]
d3n5aa_ : (THR349) (ALA403) [view usage] : b.7.1.0 |C2 domain-like |C2 domain (Calcium/lipid-binding domain, CaLB) |automated matches |automated matches |Mouse (Mus musculus) [TaxId: 10090]
d3cnca_ : (CYS184) (ASP228) [view usage] : b.21.1.1 |Virus attachment protein globular domain |Virus attachment protein globular domain |Adenovirus fiber protein "knob" domain |Adenovirus fiber protein "knob" domain |Human adenovirus 16
d4ktta1 : (GLY69) (PRO115) [view usage] : d.130.1.1 |S-adenosylmethionine synthetase |S-adenosylmethionine synthetase |S-adenosylmethionine synthetase |S-adenosylmethionine synthetase |Human (Homo sapiens), isoform type-2 [TaxId: 9606]
d2h5yb_ : (LEU81) (GLY118) [view usage] : c.94.1.0 |Periplasmic binding protein-like II |Periplasmic binding protein-like II |automated matches |automated matches |Xanthomonas axonopodis [TaxId: 190486]
d1f6aa1 : (LYS4) (ASN42) [view usage] : b.1.1.4 |Immunoglobulin-like beta-sandwich |Immunoglobulin |I set domains |IgE high affinity receptor alpha subunit |Human (Homo sapiens) [TaxId: 9606]
d3acfa_ : (SER114) (ASP161) [view usage] : b.18.1.0 |Galactose-binding domain-like |Galactose-binding domain-like |automated matches |automated matches |Clostridium josui [TaxId: 1499]
d3sv8a_ : (LYS989) (ASN1027) [view usage] : b.47.1.3 |Trypsin-like serine proteases |Trypsin-like serine proteases |Viral proteases |automated matches |Hepatitis C virus subtype 1a [TaxId: 31646]
d1ltoa_ : (GLY196) (THR229) [view usage] : b.47.1.2 |Trypsin-like serine proteases |Trypsin-like serine proteases |Eukaryotic proteases |Alpha tryptase I |Human (Homo sapiens) [TaxId: 9606]
d3h1vx1 : (PRO145) (VAL200) [view usage] : c.55.1.3 |Ribonuclease H-like motif |Actin-like ATPase domain |Hexokinase |Glucokinase |Human (Homo sapiens) [TaxId: 9606]
d1iila_ : (PRO29) (ALA66) [view usage] : b.42.1.1 |beta-Trefoil |Cytokine |Fibroblast growth factors (FGF) |Basic FGF (FGF2) |Human (Homo sapiens) [TaxId: 9606]
d2enpa_ : (LEU101) (ALA138) [view usage] : b.7.1.0 |C2 domain-like |C2 domain (Calcium/lipid-binding domain, CaLB) |automated matches |automated matches |Human (Homo sapiens) [TaxId: 9606]
d2d9za_ : (CYS35) (ASP82) [view usage] : b.55.1.0 |PH domain-like barrel |PH domain-like |automated matches |automated matches |Human (Homo sapiens) [TaxId: 9606]
d2b3ra_ : (GLN1462) (ALA1505) [view usage] : b.7.1.0 |C2 domain-like |C2 domain (Calcium/lipid-binding domain, CaLB) |automated matches |automated matches |Mouse (Mus musculus) [TaxId: 10090]
d1flka1 : (PRO425) (CYS470) [view usage] : b.8.1.1 |TRAF domain-like |TRAF domain-like |MATH domain |TNF receptor associated factor 3 (TRAF3) |Human (Homo sapiens) [TaxId: 9606]
d1iilb_ : (PRO29) (ALA66) [view usage] : b.42.1.1 |beta-Trefoil |Cytokine |Fibroblast growth factors (FGF) |Basic FGF (FGF2) |Human (Homo sapiens) [TaxId: 9606]
d3g9wa2 : (LYS360) (GLN384) [view usage] : b.55.1.0 |PH domain-like barrel |PH domain-like |automated matches |automated matches |Mouse (Mus musculus) [TaxId: 10090]
d1c5db2 : (GLN119) (TRP158) [view usage] : b.1.1.2 |Immunoglobulin-like beta-sandwich |Immunoglobulin |C1 set domains (antibody constant domain-like) |Immunoglobulin heavy chain gamma constant domain 1, CH1-gamma |Norway rat (Rattus norvegicus) [TaxId: 10116]
d4nwla_ : (LYS-11) (ASN27) [view usage] : b.47.1.3 |Trypsin-like serine proteases |Trypsin-like serine proteases |Viral proteases |automated matches |Hepatitis C virus subtype 1a [TaxId: 31646]
d2h5ya_ : (LEU81) (GLY118) [view usage] : c.94.1.0 |Periplasmic binding protein-like II |Periplasmic binding protein-like II |automated matches |automated matches |Xanthomonas axonopodis [TaxId: 190486]
d3dr4a_ : (ALA127) (ALA158) [view usage] : c.67.1.0 |PLP-dependent transferase-like |PLP-dependent transferases |automated matches |automated matches |Caulobacter crescentus [TaxId: 190650]
List of distinct SCOP folds where this concept is used (in one or more of its domains):
b.68, c.67, c.94, b.29, b.47, d.144, c.55, b.18, b.121, b.1, e.11, b.42, b.21, b.55, b.7, d.130, b.8, b.165