Tableau information
Concept source: d2ci6a_ amino acid (a.a.) range (ASP129)(ASP169)
nSSEs in this Concept: 4
String of secondary struct.elems. (SSEs) defining this concept: EEHE
Each SSE's a.a.range: (start resi) (end resi) SSEtype (H=Helix; E=Strand) followed by a numeric SSE ID:
(ASP129) (THR133) E1
(GLU136) (SER142) E2
(GLN147) (PHE157) H3
(SER163) (ASP169) E4
Orientation angles° of SSE-pairs; those in contact shown in bold font
E1
E2 164.1° E2
H3 -33.0° 162.1° H3
E4 132.8° -35.9° 144.5°
Footnote: Inferred from this concept's usages (listed below) was the angular variance of 1σ = ±13.0° about each orientation angle shown above.
Loci of concept usages (shown as a range of a.a. residue ids) in SCOP(v2.05) domains, along with their brief legend taken from SCOP
d1c30b2 : (GLU166) (PRO220) [view usage] : c.23.16.1 |Flavodoxin-like |Class I glutamine amidotransferase-like |Class I glutamine amidotransferases (GAT) |Carbamoyl phosphate synthetase, small subunit C-terminal domain |Escherichia coli [TaxId: 562]
d2rgfa_ : (GLU60) (LYS95) [view usage] : d.15.1.5 |beta-Grasp (ubiquitin-like) |Ubiquitin-like |Ras-binding domain, RBD |Ral guanosine-nucleotide exchange factor, RalGDS |Human (Homo sapiens) [TaxId: 9606]
d3tlfd_ : (THR8) (GLY59) [view usage] : c.14.1.0 |ClpP/crotonase |ClpP/crotonase |automated matches |automated matches |Mycobacterium avium [TaxId: 1770]
d3tdca1 : (GLY1794) (ALA1853) [view usage] : c.14.1.0 |ClpP/crotonase |ClpP/crotonase |automated matches |automated matches |Human (Homo sapiens) [TaxId: 9606]
d3u5es_ : (HIS3) (GLU66) [view usage] : i.1.1.1 |Ribosome and ribosomal fragments |Ribosome and ribosomal fragments |Ribosome complexes |Eukaryotic, cytoplasmic (80S ribosome functional complex) |Saccharomyces cerevisiae [TaxId: 559292]
d3u5es_ : (ASN74) (GLU128) [view usage] : i.1.1.1 |Ribosome and ribosomal fragments |Ribosome and ribosomal fragments |Ribosome complexes |Eukaryotic, cytoplasmic (80S ribosome functional complex) |Saccharomyces cerevisiae [TaxId: 559292]
d1xmta_ : (ALA24) (SER75) [view usage] : d.108.1.1 |Acyl-CoA N-acyltransferases (Nat) |Acyl-CoA N-acyltransferases (Nat) |N-acetyl transferase, NAT |Hypothetical protein AT1g77540 |Thale cress (Arabidopsis thaliana) [TaxId: 3702]
d1qwdb_ : (LEU129) (PRO175) [view usage] : b.60.1.1 |Lipocalins |Lipocalins |Retinol binding protein-like |Outer membrane lipoprotein Blc |Escherichia coli [TaxId: 562]
d3zdtb1 : (GLY84) (LEU124) [view usage] : d.15.1.0 |beta-Grasp (ubiquitin-like) |Ubiquitin-like |automated matches |automated matches |Chicken (Gallus gallus) [TaxId: 9031]
d2ewoh_ : (THR104) (LYS156) [view usage] : d.126.1.0 |Pentein, beta/alpha-propeller |Pentein |automated matches |automated matches |Streptococcus mutans [TaxId: 1309]
d2ewoh_ : (VAL226) (THR277) [view usage] : d.126.1.0 |Pentein, beta/alpha-propeller |Pentein |automated matches |automated matches |Streptococcus mutans [TaxId: 1309]
d3rzva_ : (VAL279) (GLY332) [view usage] : c.97.3.1 |Cytidine deaminase-like |JAB1/MPN domain |JAB1/MPN domain |Catalytic domain of AMSH |Human (Homo sapiens) [TaxId: 9606]
d3peac_ : (PHE4) (GLY54) [view usage] : c.14.1.0 |ClpP/crotonase |ClpP/crotonase |automated matches |automated matches |Bacillus anthracis [TaxId: 261594]
d1vhvb_ : (TYR187) (LEU224) [view usage] : c.90.1.1 |Tetrapyrrole methylase |Tetrapyrrole methylase |Tetrapyrrole methylase |Diphthine synthase, DphB |Archaeoglobus fulgidus [TaxId: 2234]
d2gbra_ : (ARG47) (LEU76) [view usage] : d.15.1.1 |beta-Grasp (ubiquitin-like) |Ubiquitin-like |Ubiquitin-related |automated matches |Human (Homo sapiens) [TaxId: 9606]
d1wsca1 : (ALA57) (LEU120) [view usage] : d.309.1.1 |AMMECR1-like |AMMECR1-like |AMMECR1-like |Hypothetical protein ST0229 |Sulfolobus tokodaii [TaxId: 111955]
d1unnd_ : (ALA284) (LEU339) [view usage] : d.240.1.1 |Lesion bypass DNA polymerase (Y-family), little finger domain |Lesion bypass DNA polymerase (Y-family), little finger domain |Lesion bypass DNA polymerase (Y-family), little finger domain |DNA polymerase IV |Escherichia coli [TaxId: 562]
d2bvfa1 : (ASN92) (VAL126) [view usage] : d.145.1.1 |FAD-binding/transporter-associated domain-like |FAD-binding/transporter-associated domain-like |FAD-linked oxidases, N-terminal domain |6-hydroxy-d-nicotine oxidase |Arthrobacter nicotinovorans [TaxId: 29320]
d4eewa_ : (GLN57) (GLU86) [view usage] : d.15.1.1 |beta-Grasp (ubiquitin-like) |Ubiquitin-like |Ubiquitin-related |automated matches |Human (Homo sapiens) [TaxId: 9606]
d2hfqa1 : (MET1) (HIS59) [view usage] : d.375.1.1 |NE1680-like |NE1680-like |NE1680-like |Hypothetical protein NE1680 |Nitrosomonas europaea [TaxId: 915]
d1euva_ : (HIS514) (HIS568) [view usage] : d.3.1.7 |Cysteine proteinases |Cysteine proteinases |Adenain-like |Ulp1 protease C-terminal domain |Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
d1rota_ : (ARG51) (ASP79) [view usage] : d.26.1.1 |FKBP-like |FKBP-like |FKBP immunophilin/proline isomerase |FKBP59-I, N-terminal domain |Rabbit (Oryctolagus cuniculus) [TaxId: 9986]
d2gbka_ : (GLN47) (GLY82) [view usage] : d.15.1.1 |beta-Grasp (ubiquitin-like) |Ubiquitin-like |Ubiquitin-related |automated matches |Human (Homo sapiens) [TaxId: 9606]
d2l80a_ : (ASN32) (GLY74) [view usage] : g.44.1.5 |RING/U-box |RING/U-box |Zf-UBP |automated matches |Human (Homo sapiens) [TaxId: 9606]
d2iaya1 : (LEU58) (ASP113) [view usage] : d.376.1.1 |Lp2179-like |Lp2179-like |Lp2179-like |Hypothetical protein Lp2179 |Lactobacillus plantarum [TaxId: 1590]
d2idva_ : (ASN44) (CYS99) [view usage] : d.86.1.0 |eIF4e-like |eIF4e-like |automated matches |automated matches |Wheat (Triticum aestivum) [TaxId: 4565]
d2nrbb1 : (ALA435) (PRO471) [view usage] : c.124.1.3 |NagB/RpiA/CoA transferase-like |NagB/RpiA/CoA transferase-like |CoA transferase beta subunit-like |Succinate:CoA transferase, C-terminal domain |Pig (Sus scrofa) [TaxId: 9823]
d2rsua_ : (ARG42) (LEU71) [view usage] : d.15.1.1 |beta-Grasp (ubiquitin-like) |Ubiquitin-like |Ubiquitin-related |Ubiquitin |Human (Homo sapiens) [TaxId: 9606]
d1h8ca_ : (GLU3) (SER49) [view usage] : d.15.1.2 |beta-Grasp (ubiquitin-like) |Ubiquitin-like |UBX domain |Fas-associated factor 1, Faf1 |Human (Homo sapiens) [TaxId: 9606]
d1g61a_ : (LEU2110) (ILE2141) [view usage] : d.126.1.1 |Pentein, beta/alpha-propeller |Pentein |Ribosome anti-association factor eIF6 (aIF6) |Ribosome anti-association factor eIF6 (aIF6) |Methanococcus jannaschii [TaxId: 2190]
d1h7va_ : (GLY6) (LYS57) [view usage] : g.41.5.1 |Rubredoxin-like |Rubredoxin-like |Rubredoxin |Rubredoxin |Guillardia theta [TaxId: 55529]
d1iw7a2 : (LEU85) (ASN124) [view usage] : d.181.1.1 |Insert subdomain of RNA polymerase alpha subunit |Insert subdomain of RNA polymerase alpha subunit |Insert subdomain of RNA polymerase alpha subunit |RNA polymerase alpha subunit |Thermus thermophilus [TaxId: 274]
d3ff6a1 : (GLY1769) (ALA1828) [view usage] : c.14.1.0 |ClpP/crotonase |ClpP/crotonase |automated matches |automated matches |Human (Homo sapiens) [TaxId: 9606]
d3i41a_ : (GLY131) (GLY192) [view usage] : d.151.1.0 |DNase I-like |DNase I-like |automated matches |automated matches |Staphylococcus aureus [TaxId: 561307]
d2at0x_ : (SER115) (LYS167) [view usage] : b.60.1.1 |Lipocalins |Lipocalins |Retinol binding protein-like |Nitrophorin 4 |Rhodnius prolixus [TaxId: 13249]
d1sxxa_ : (SER115) (LYS167) [view usage] : b.60.1.1 |Lipocalins |Lipocalins |Retinol binding protein-like |Nitrophorin 4 |Rhodnius prolixus [TaxId: 13249]
d3pvja_ : (LEU3) (ASP47) [view usage] : b.82.2.5 |Double-stranded beta-helix |Clavaminate synthase-like |TauD/TfdA-like |automated matches |Pseudomonas putida [TaxId: 160488]
d3kudb_ : (ARG100) (PHE130) [view usage] : d.15.1.5 |beta-Grasp (ubiquitin-like) |Ubiquitin-like |Ras-binding domain, RBD |c-Raf1 RBD |Human (Homo sapiens) [TaxId: 9606]
d1auza_ : (SER1) (GLU50) [view usage] : c.13.2.1 |SpoIIaa-like |SpoIIaa-like |Anti-sigma factor antagonist SpoIIaa |Anti-sigma factor antagonist SpoIIaa |Bacillus subtilis [TaxId: 1423]
d1z1wa2 : (ARG171) (VAL224) [view usage] : d.92.1.13 |Zincin-like |Metalloproteases ("zincins"), catalytic domain |Zn aminopeptidase catalytic domain |Tricorn protease interacting factor F3 catalytic domain |Thermoplasma acidophilum [TaxId: 2303]
d1s20a_ : (GLN66) (ASN113) [view usage] : c.122.1.1 |L-sulfolactate dehydrogenase-like |L-sulfolactate dehydrogenase-like |L-sulfolactate dehydrogenase-like |2,3-diketogulonate oxidoreductase (YiaK) |Escherichia coli [TaxId: 562]
d4ny0a1 : (GLY84) (LEU124) [view usage] : d.15.1.0 |beta-Grasp (ubiquitin-like) |Ubiquitin-like |automated matches |automated matches |Human (Homo sapiens) [TaxId: 9606]
d1s20g_ : (GLN66) (ASN113) [view usage] : c.122.1.1 |L-sulfolactate dehydrogenase-like |L-sulfolactate dehydrogenase-like |L-sulfolactate dehydrogenase-like |2,3-diketogulonate oxidoreductase (YiaK) |Escherichia coli [TaxId: 562]
d1vcca_ : (ARG2) (TYR46) [view usage] : d.121.1.1 |DNA topoisomerase I domain |DNA topoisomerase I domain |Vaccinia DNA topoisomerase I, 9 kDa N-terminal fragment |Vaccinia DNA topoisomerase I, 9 kDa N-terminal fragment |Vaccinia virus, strain WR [TaxId: 10245]
d4a19x_ : (LYS87) (THR142) [view usage] : i.1.1.2 |Ribosome and ribosomal fragments |Ribosome and ribosomal fragments |Large subunit |Eukaryotic, cytoplasmic (60S subunit) |Tetrahymena thermophila [TaxId: 5911]
d1rlbe_ : (ALA115) (HIS170) [view usage] : b.60.1.1 |Lipocalins |Lipocalins |Retinol binding protein-like |Retinol binding protein |Chicken (Gallus gallus) [TaxId: 9031]
d1tlja_ : (ILE54) (TYR107) [view usage] : d.282.1.1 |SSo0622-like |SSo0622-like |SSo0622-like |Hypothetical protein SSo0622 |Sulfolobus solfataricus [TaxId: 2287]
d2g8ya_ : (ASN68) (ASN117) [view usage] : c.122.1.0 |L-sulfolactate dehydrogenase-like |L-sulfolactate dehydrogenase-like |automated matches |automated matches |Escherichia coli K-12 [TaxId: 83333]
d2il4a_ : (ALA24) (SER75) [view usage] : d.108.1.1 |Acyl-CoA N-acyltransferases (Nat) |Acyl-CoA N-acyltransferases (Nat) |N-acetyl transferase, NAT |Hypothetical protein AT1g77540 |Thale cress (Arabidopsis thaliana) [TaxId: 3702]
d1vhva_ : (TYR187) (LEU224) [view usage] : c.90.1.1 |Tetrapyrrole methylase |Tetrapyrrole methylase |Tetrapyrrole methylase |Diphthine synthase, DphB |Archaeoglobus fulgidus [TaxId: 2234]
d1vaja1 : (GLY46) (LEU111) [view usage] : d.309.1.1 |AMMECR1-like |AMMECR1-like |AMMECR1-like |Hypothetical protein PH0010 |Pyrococcus horikoshii [TaxId: 53953]
d1nxua_ : (GLN66) (ASN113) [view usage] : c.122.1.1 |L-sulfolactate dehydrogenase-like |L-sulfolactate dehydrogenase-like |L-sulfolactate dehydrogenase-like |2,3-diketogulonate oxidoreductase (YiaK) |Escherichia coli [TaxId: 562]
d2ckca1 : (THR2567) (MET2605) [view usage] : d.76.2.1 |GYF/BRK domain-like |BRK domain-like |BRK domain-like |Chromodomain-helicase-DNA-binding protein 7, CHD7 |Human (Homo sapiens) [TaxId: 9606]
d2h1ib_ : (HIS4) (ARG47) [view usage] : c.69.1.14 |alpha/beta-Hydrolases |alpha/beta-Hydrolases |Carboxylesterase/thioesterase 1 |Carboxylesterase |Bacillus cereus [TaxId: 1396]
d2r86a2 : (VAL129) (GLY178) [view usage] : d.142.1.9 |ATP-grasp |Glutathione synthetase ATP-binding domain-like |PurP ATP-binding domain-like |5-formaminoimidazole-4-carboxamide ribonucleotide synthetase PurP |Pyrococcus furiosus [TaxId: 2261]
d2hzba1 : (ARG128) (PRO162) [view usage] : c.143.1.1 |CofD-like |CofD-like |CofD-like |Hypothetical protein BH3568 |Bacillus halodurans [TaxId: 86665]
d1veha_ : (ARG40) (SER87) [view usage] : d.52.8.1 |Alpha-lytic protease prodomain-like |Fe-S cluster assembly (FSCA) domain-like |NifU C-terminal domain-like |HIRA-interacting protein 5, HIRIP5 |Mouse (Mus musculus) [TaxId: 10090]
d1ilea2 : (TYR246) (PRO280) [view usage] : b.51.1.1 |ValRS/IleRS/LeuRS editing domain |ValRS/IleRS/LeuRS editing domain |ValRS/IleRS/LeuRS editing domain |Isoleucyl-tRNA synthetase (IleRS) |Thermus thermophilus [TaxId: 274]
d1jdbf2 : (GLU166) (PRO220) [view usage] : c.23.16.1 |Flavodoxin-like |Class I glutamine amidotransferase-like |Class I glutamine amidotransferases (GAT) |Carbamoyl phosphate synthetase, small subunit C-terminal domain |Escherichia coli [TaxId: 562]
d3i2ea_ : (ASP130) (ASP170) [view usage] : d.126.1.0 |Pentein, beta/alpha-propeller |Pentein |automated matches |automated matches |Human (Homo sapiens) [TaxId: 9606]
d2g8yb_ : (ASN68) (ASN117) [view usage] : c.122.1.0 |L-sulfolactate dehydrogenase-like |L-sulfolactate dehydrogenase-like |automated matches |automated matches |Escherichia coli K-12 [TaxId: 83333]
d2ppva_ : (SER128) (PRO161) [view usage] : c.143.1.0 |CofD-like |CofD-like |automated matches |automated matches |Staphylococcus epidermidis [TaxId: 176280]
d2gbkc_ : (GLN48) (LEU78) [view usage] : d.15.1.1 |beta-Grasp (ubiquitin-like) |Ubiquitin-like |Ubiquitin-related |automated matches |Human (Homo sapiens) [TaxId: 9606]
d1j3lf_ : (GLU53) (GLY93) [view usage] : c.8.7.1 |The "swivelling" beta/beta/alpha domain |RraA-like |RraA-like |Demethylmenaquinone methyltransferase |Thermus thermophilus [TaxId: 274]
d1m3eb2 : (ALA435) (PRO471) [view usage] : c.124.1.3 |NagB/RpiA/CoA transferase-like |NagB/RpiA/CoA transferase-like |CoA transferase beta subunit-like |Succinate:CoA transferase, C-terminal domain |Pig (Sus scrofa) [TaxId: 9823]
d1h70a_ : (ASP117) (LYS159) [view usage] : d.126.1.3 |Pentein, beta/alpha-propeller |Pentein |Dimethylarginine dimethylaminohydrolase DDAH |Dimethylarginine dimethylaminohydrolase DDAH |Pseudomonas aeruginosa [TaxId: 287]
d1pqsa_ : (LYS815) (TYR854) [view usage] : d.15.2.2 |beta-Grasp (ubiquitin-like) |CAD & PB1 domains |PB1 domain |Cell division control protein 24, CDC24, C-terminal domain |Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
d1gy9a_ : (SER6) (ARG48) [view usage] : b.82.2.5 |Double-stranded beta-helix |Clavaminate synthase-like |TauD/TfdA-like |Taurine/alpha-ketoglutarate dioxygenase TauD |Escherichia coli [TaxId: 562]
d3j39s_ : (LEU7) (GLU69) [view usage] : i.1.1.1 |Ribosome and ribosomal fragments |Ribosome and ribosomal fragments |Ribosome complexes |Eukaryotic, cytoplasmic (80S ribosome functional complex) |Drosophila melanogaster [TaxId: 7227]
d3j39s_ : (LYS76) (ALA134) [view usage] : i.1.1.1 |Ribosome and ribosomal fragments |Ribosome and ribosomal fragments |Ribosome complexes |Eukaryotic, cytoplasmic (80S ribosome functional complex) |Drosophila melanogaster [TaxId: 7227]
d2znva_ : (ILE291) (GLY344) [view usage] : c.97.3.1 |Cytidine deaminase-like |JAB1/MPN domain |JAB1/MPN domain |automated matches |Human (Homo sapiens) [TaxId: 9606]
d1ef5a_ : (GLU695) (LYS732) [view usage] : d.15.1.5 |beta-Grasp (ubiquitin-like) |Ubiquitin-like |Ras-binding domain, RBD |Rgl |Mouse (Mus musculus) [TaxId: 10090]
d2exra1 : (GLU121) (SER159) [view usage] : d.145.1.0 |FAD-binding/transporter-associated domain-like |FAD-binding/transporter-associated domain-like |automated matches |automated matches |Thale cress (Arabidopsis thaliana) [TaxId: 3702]
d2l72a_ : (PHE60) (HIS109) [view usage] : d.109.1.0 |Gelsolin-like |Actin depolymerizing proteins |automated matches |automated matches |Toxoplasma gondii [TaxId: 5811]
d2erwa1 : (VAL13) (HIS44) [view usage] : g.68.1.1 |Kazal-type serine protease inhibitors |Kazal-type serine protease inhibitors |Ovomucoid domain III-like |Blood-sucking insect-derived tryptase inhibitor |Triatoma infestans [TaxId: 30076]
d2aeha3 : (GLY84) (LEU124) [view usage] : d.15.1.4 |beta-Grasp (ubiquitin-like) |Ubiquitin-like |First domain of FERM |Focal adhesion kinase 1 |Chicken (Gallus gallus) [TaxId: 9031]
d2al6a3 : (GLY84) (LEU124) [view usage] : d.15.1.4 |beta-Grasp (ubiquitin-like) |Ubiquitin-like |First domain of FERM |Focal adhesion kinase 1 |Chicken (Gallus gallus) [TaxId: 9031]
d1wmra2 : (THR505) (ASP564) [view usage] : b.80.1.0 |Single-stranded right-handed beta-helix |Pectin lyase-like |automated matches |automated matches |Aspergillus niger [TaxId: 5061]
d1os7a_ : (SER6) (ARG48) [view usage] : b.82.2.5 |Double-stranded beta-helix |Clavaminate synthase-like |TauD/TfdA-like |Taurine/alpha-ketoglutarate dioxygenase TauD |Escherichia coli [TaxId: 562]
d2gbkd_ : (GLN48) (LEU78) [view usage] : d.15.1.1 |beta-Grasp (ubiquitin-like) |Ubiquitin-like |Ubiquitin-related |automated matches |Human (Homo sapiens) [TaxId: 9606]
d1zt2a1 : (GLU37) (TYR75) [view usage] : d.264.1.1 |Prim-pol domain |Prim-pol domain |PriA-like |DNA primase small subunit PriA |Sulfolobus solfataricus [TaxId: 2287]
d3c9fa2 : (ARG20) (GLY79) [view usage] : d.159.1.2 |Metallo-dependent phosphatases |Metallo-dependent phosphatases |5'-nucleotidase (syn. UDP-sugar hydrolase), N-terminal domain |5'-nucleotidase (syn. UDP-sugar hydrolase), N-terminal domain |Yeast (Candida albicans) [TaxId: 5476]
List of distinct SCOP folds where this concept is used (in one or more of its domains):
b.80, b.82, c.69, d.159, i.1, c.90, d.92, c.124, c.14, c.23, d.151, b.60, d.3, c.13, d.126, d.108, c.97, c.8, c.122, d.142,
d.145, d.109, d.15, b.51, d.26, d.86, d.240, d.52, d.264, g.41, g.44, c.143, g.68, d.76, d.181, d.309, d.282, d.375, d.376, d.121