Tableau information
Concept source: d1d0na5 amino acid (a.a.) range (ASP565)(ALA606)
nSSEs in this Concept: 4
String of secondary struct.elems. (SSEs) defining this concept: EEHE
Each SSE's a.a.range: (start resi) (end resi) SSEtype (H=Helix; E=Strand) followed by a numeric SSE ID:
(ASP565) (THR571) E1
(ALA574) (GLY580) E2
(SER584) (ARG599) H3
(GLN601) (ALA606) E4
Orientation angles° of SSE-pairs; those in contact shown in bold font
E1
E2 164.3° E2
H3 -21.4° 165.3° H3
E4 138.7° -27.2° 157.2°
Footnote: Inferred from this concept's usages (listed below) was the angular variance of 1σ = ±8.8° about each orientation angle shown above.
Loci of concept usages (shown as a range of a.a. residue ids) in SCOP(v2.05) domains, along with their brief legend taken from SCOP
d2f6qb_ : (THR111) (GLY161) [view usage] : c.14.1.3 |ClpP/crotonase |ClpP/crotonase |Crotonase-like |Peroxisomal 3,2-trans-enoyl-CoA isomerase |Human (Homo sapiens) [TaxId: 9606]
d3hrxa_ : (MET1) (GLY52) [view usage] : c.14.1.0 |ClpP/crotonase |ClpP/crotonase |automated matches |automated matches |Thermus thermophilus HB8 [TaxId: 300852]
d3fdua_ : (HIS12) (ARG62) [view usage] : c.14.1.0 |ClpP/crotonase |ClpP/crotonase |automated matches |automated matches |Acinetobacter baumannii [TaxId: 400667]
d4pj6a2 : (LEU369) (ILE422) [view usage] : d.92.1.0 |Zincin-like |Metalloproteases ("zincins"), catalytic domain |automated matches |automated matches |Human (Homo sapiens) [TaxId: 9606]
d1j72a3 : (ASP280) (PRO331) [view usage] : d.109.1.1 |Gelsolin-like |Actin depolymerizing proteins |Gelsolin-like |Macrophage capping protein Cap G |Human (Homo sapiens) [TaxId: 9606]
d2aaza_ : (MET189) (ASP255) [view usage] : d.117.1.1 |Thymidylate synthase/dCMP hydroxymethylase |Thymidylate synthase/dCMP hydroxymethylase |Thymidylate synthase/dCMP hydroxymethylase |automated matches |Fungus (Filobasidiella neoformans) [TaxId: 5207]
d4a17e_ : (GLY129) (ASP181) [view usage] : i.1.1.2 |Ribosome and ribosomal fragments |Ribosome and ribosomal fragments |Large subunit |Eukaryotic, cytoplasmic (60S subunit) |Tetrahymena thermophila [TaxId: 5911]
d2ewoh_ : (ASN310) (ARG348) [view usage] : d.126.1.0 |Pentein, beta/alpha-propeller |Pentein |automated matches |automated matches |Streptococcus mutans [TaxId: 1309]
d1xkna_ : (ASN288) (ASP326) [view usage] : d.126.1.6 |Pentein, beta/alpha-propeller |Pentein |Porphyromonas-type peptidylarginine deiminase |Putative peptidyl-arginine deiminase |Chlorobium tepidum [TaxId: 1097]
d2ddrc_ : (GLY132) (GLY193) [view usage] : d.151.1.3 |DNase I-like |DNase I-like |Sphingomyelin phosphodiesterase-like |automated matches |Bacillus cereus [TaxId: 1396]
d1os7b_ : (GLU3) (ARG48) [view usage] : b.82.2.5 |Double-stranded beta-helix |Clavaminate synthase-like |TauD/TfdA-like |Taurine/alpha-ketoglutarate dioxygenase TauD |Escherichia coli [TaxId: 562]
d2isia_ : (ARG156) (GLY209) [view usage] : d.151.1.1 |DNase I-like |DNase I-like |DNase I-like |automated matches |Human (Homo sapiens) [TaxId: 9606]
d3hj3a2 : (VAL404) (ILE460) [view usage] : d.117.1.1 |Thymidylate synthase/dCMP hydroxymethylase |Thymidylate synthase/dCMP hydroxymethylase |Thymidylate synthase/dCMP hydroxymethylase |automated matches |Cryptosporidium hominis [TaxId: 237895]
d1w2be_ : (THR122) (ARG170) [view usage] : i.1.1.2 |Ribosome and ribosomal fragments |Ribosome and ribosomal fragments |Large subunit |Prokaryotic (50S subunit) |Haloarcula marismortui [TaxId: 2238]
d1nzya_ : (ILE5) (THR54) [view usage] : c.14.1.3 |ClpP/crotonase |ClpP/crotonase |Crotonase-like |4-Chlorobenzoyl-CoA dehalogenase |Pseudomonas sp., strain CBS-3 [TaxId: 306]
d3qkab_ : (LEU4) (GLY55) [view usage] : c.14.1.0 |ClpP/crotonase |ClpP/crotonase |automated matches |automated matches |Mycobacterium marinum [TaxId: 216594]
d2x8rb_ : (GLY91) (THR147) [view usage] : c.1.8.0 |TIM beta/alpha-barrel |(Trans)glycosidases |automated matches |automated matches |Aspergillus fumigatus [TaxId: 330879]
d3rqzc_ : (ASN103) (HIS147) [view usage] : d.159.1.0 |Metallo-dependent phosphatases |Metallo-dependent phosphatases |automated matches |automated matches |Sphaerobacter thermophilus [TaxId: 479434]
d1jxza_ : (ILE5) (THR54) [view usage] : c.14.1.3 |ClpP/crotonase |ClpP/crotonase |Crotonase-like |4-Chlorobenzoyl-CoA dehalogenase |Pseudomonas sp., strain CBS-3 [TaxId: 306]
d2h07a1 : (GLY45) (PRO90) [view usage] : c.61.1.0 |PRTase-like |PRTase-like |automated matches |automated matches |Human (Homo sapiens) [TaxId: 9606]
d2zkre1 : (GLY131) (GLU183) [view usage] : i.1.1.1 |Ribosome and ribosomal fragments |Ribosome and ribosomal fragments |Ribosome complexes |Eukaryotic, cytoplasmic (80S ribosome functional complex) |Dog (Canis familiaris) [TaxId: 9615]
d1vrra_ : (ASP119) (LEU161) [view usage] : c.52.1.21 |Restriction endonuclease-like |Restriction endonuclease-like |Restriction endonuclease BstyI |Restriction endonuclease BstyI |Geobacillus stearothermophilus [TaxId: 1422]
d1g61a_ : (ALA2019) (THR2051) [view usage] : d.126.1.1 |Pentein, beta/alpha-propeller |Pentein |Ribosome anti-association factor eIF6 (aIF6) |Ribosome anti-association factor eIF6 (aIF6) |Methanococcus jannaschii [TaxId: 2190]
d1z2wa1 : (LYS73) (HIS115) [view usage] : d.159.1.7 |Metallo-dependent phosphatases |Metallo-dependent phosphatases |YfcE-like |Vacuolar protein sorting 29, VPS29 |Mouse (Mus musculus) [TaxId: 10090]
d3iifc_ : (ALA255) (PRO309) [view usage] : c.50.1.2 |Macro domain-like |Macro domain-like |Macro domain |Histone macro-H2a1.1 |Human (Homo sapiens) [TaxId: 9606]
d4iawc_ : (GLN117) (PRO171) [view usage] : b.60.1.1 |Lipocalins |Lipocalins |Retinol binding protein-like |Neutrophil gelatinase-associated lipocalin (NGAL) |Human (Homo sapiens) [TaxId: 9606]
d2ai6a1 : (GLY75) (ASN122) [view usage] : d.322.1.1 |PHP14-like |PHP14-like |Janus/Ocnus |Phosphohistidine phosphatase 1, PHP14 |Human (Homo sapiens) [TaxId: 9606]
d3cq1a_ : (TYR34) (VAL81) [view usage] : d.52.8.2 |Alpha-lytic protease prodomain-like |Fe-S cluster assembly (FSCA) domain-like |PaaD-like |automated matches |Thermus thermophilus HB8 [TaxId: 300852]
d4nekb_ : (LEU4) (SER56) [view usage] : c.14.1.0 |ClpP/crotonase |ClpP/crotonase |automated matches |automated matches |Magnetospirillum magneticum [TaxId: 342108]
d2q4ya_ : (ALA24) (SER75) [view usage] : d.108.1.1 |Acyl-CoA N-acyltransferases (Nat) |Acyl-CoA N-acyltransferases (Nat) |N-acetyl transferase, NAT |Hypothetical protein AT1g77540 |Thale cress (Arabidopsis thaliana) [TaxId: 3702]
d1ef9a_ : (VAL6) (LEU53) [view usage] : c.14.1.3 |ClpP/crotonase |ClpP/crotonase |Crotonase-like |Methylmalonyl CoA decarboxylase |Escherichia coli [TaxId: 562]
d2pbpa_ : (SER6) (GLY57) [view usage] : c.14.1.0 |ClpP/crotonase |ClpP/crotonase |automated matches |automated matches |Geobacillus kaustophilus [TaxId: 235909]
d2gr9a1 : (PRO115) (GLU161) [view usage] : c.2.1.0 |NAD(P)-binding Rossmann-fold domains |NAD(P)-binding Rossmann-fold domains |automated matches |automated matches |Human (Homo sapiens) [TaxId: 9606]
d4bgdc_ : (GLY2234) (PHE2294) [view usage] : c.97.3.0 |Cytidine deaminase-like |JAB1/MPN domain |automated matches |automated matches |Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
d2h0bc_ : (VAL448) (GLY474) [view usage] : b.29.1.4 |Concanavalin A-like lectins/glucanases |Concanavalin A-like lectins/glucanases |Laminin G-like module |Ligand-binding domain of neurexin 1beta |Cow (Bos taurus) [TaxId: 9913]
d1m3ga_ : (PRO210) (ALA259) [view usage] : c.45.1.1 |(Phosphotyrosine protein) phosphatases II |(Phosphotyrosine protein) phosphatases II |Dual specificity phosphatase-like |Mapk phosphatase |Human (Homo sapiens), pac-1 [TaxId: 9606]
d1esgb_ : (ASP94) (PRO144) [view usage] : c.52.1.3 |Restriction endonuclease-like |Restriction endonuclease-like |Restriction endonuclease BamHI |Restriction endonuclease BamHI |Bacillus amyloliquefaciens [TaxId: 1390]
d2x8ra_ : (GLY91) (THR147) [view usage] : c.1.8.0 |TIM beta/alpha-barrel |(Trans)glycosidases |automated matches |automated matches |Aspergillus fumigatus [TaxId: 330879]
d1ngla_ : (GLN118) (ILE173) [view usage] : b.60.1.1 |Lipocalins |Lipocalins |Retinol binding protein-like |Neutrophil gelatinase-associated lipocalin (NGAL) |Human (Homo sapiens) [TaxId: 9606]
d2cu6a1 : (TYR34) (VAL81) [view usage] : d.52.8.2 |Alpha-lytic protease prodomain-like |Fe-S cluster assembly (FSCA) domain-like |PaaD-like |Hypothetical protein TTHB138 |Thermus thermophilus [TaxId: 274]
d1keia_ : (LEU30) (HIS105) [view usage] : d.92.1.2 |Zincin-like |Metalloproteases ("zincins"), catalytic domain |Thermolysin-like |Thermolysin |Bacillus thermoproteolyticus [TaxId: 1427]
d2f2ab2 : (SER188) (GLU250) [view usage] : d.128.1.5 |Glutamine synthetase/guanido kinase |Glutamine synthetase/guanido kinase |GatB/GatE catalytic domain-like |Aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase subunit B, GatB, N-terminal domain |Staphylococcus aureus [TaxId: 1280]
d4jjfa1 : (VAL199) (LEU243) [view usage] : c.2.1.0 |NAD(P)-binding Rossmann-fold domains |NAD(P)-binding Rossmann-fold domains |automated matches |automated matches |Methanothermobacter marburgensis [TaxId: 79929]
d1f0xa2 : (ASP105) (SER140) [view usage] : d.145.1.1 |FAD-binding/transporter-associated domain-like |FAD-binding/transporter-associated domain-like |FAD-linked oxidases, N-terminal domain |D-lactate dehydrogenase |Escherichia coli [TaxId: 562]
d2ddsa_ : (LEU128) (ASP195) [view usage] : d.151.1.3 |DNase I-like |DNase I-like |Sphingomyelin phosphodiesterase-like |automated matches |Bacillus cereus [TaxId: 1396]
d1xrhc_ : (PHE69) (ARG115) [view usage] : c.122.1.1 |L-sulfolactate dehydrogenase-like |L-sulfolactate dehydrogenase-like |L-sulfolactate dehydrogenase-like |Ureidoglycolate dehydrogenase AllD |Escherichia coli [TaxId: 562]
d3qkae_ : (LEU4) (GLY55) [view usage] : c.14.1.0 |ClpP/crotonase |ClpP/crotonase |automated matches |automated matches |Mycobacterium marinum [TaxId: 216594]
d4b52a_ : (LEU26) (HIS98) [view usage] : d.92.1.2 |Zincin-like |Metalloproteases ("zincins"), catalytic domain |Thermolysin-like |automated matches |Paenibacillus polymyxa [TaxId: 1406]
d3i2ea_ : (ASN221) (SER261) [view usage] : d.126.1.0 |Pentein, beta/alpha-propeller |Pentein |automated matches |automated matches |Human (Homo sapiens) [TaxId: 9606]
d4olqc_ : (ARG6) (GLY55) [view usage] : c.14.1.0 |ClpP/crotonase |ClpP/crotonase |automated matches |automated matches |Hyphomonas neptunium [TaxId: 228405]
d4pswa_ : (ASP51) (ARG99) [view usage] : d.108.1.1 |Acyl-CoA N-acyltransferases (Nat) |Acyl-CoA N-acyltransferases (Nat) |N-acetyl transferase, NAT |Histone acetyltransferase HAT1 |Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
d1dfvb_ : (GLN117) (ILE172) [view usage] : b.60.1.1 |Lipocalins |Lipocalins |Retinol binding protein-like |Neutrophil gelatinase-associated lipocalin (NGAL) |Human (Homo sapiens) [TaxId: 9606]
d1jxzb_ : (ILE5) (THR54) [view usage] : c.14.1.3 |ClpP/crotonase |ClpP/crotonase |Crotonase-like |4-Chlorobenzoyl-CoA dehalogenase |Pseudomonas sp., strain CBS-3 [TaxId: 306]
d4nekc_ : (LEU4) (SER56) [view usage] : c.14.1.0 |ClpP/crotonase |ClpP/crotonase |automated matches |automated matches |Magnetospirillum magneticum [TaxId: 342108]
d1bwda_ : (ASN182) (CYS219) [view usage] : d.126.1.2 |Pentein, beta/alpha-propeller |Pentein |Amidinotransferase |L-arginine: inosamine-phosphate amidinotransferase |Streptomyces griseus [TaxId: 1911]
d1sija4 : (SER461) (VAL522) [view usage] : d.133.1.1 |Molybdenum cofactor-binding domain |Molybdenum cofactor-binding domain |Molybdenum cofactor-binding domain |Aldehyde oxidoreductase |Desulfovibrio gigas [TaxId: 879]
d4neka_ : (LEU4) (SER56) [view usage] : c.14.1.0 |ClpP/crotonase |ClpP/crotonase |automated matches |automated matches |Magnetospirillum magneticum [TaxId: 342108]
d1h70a_ : (GLY166) (PRO196) [view usage] : d.126.1.3 |Pentein, beta/alpha-propeller |Pentein |Dimethylarginine dimethylaminohydrolase DDAH |Dimethylarginine dimethylaminohydrolase DDAH |Pseudomonas aeruginosa [TaxId: 287]
d1fl9a_ : (LEU70) (ILE112) [view usage] : c.37.1.18 |P-loop containing nucleoside triphosphate hydrolases |P-loop containing nucleoside triphosphate hydrolases |YjeE-like |Hypothetical protein HI0065 |Haemophilus influenzae [TaxId: 727]
d4j0ea1 : (GLY150) (LYS195) [view usage] : c.2.1.0 |NAD(P)-binding Rossmann-fold domains |NAD(P)-binding Rossmann-fold domains |automated matches |automated matches |Nematode (Caenorhabditis elegans) [TaxId: 6239]
d3p5mb_ : (GLY3) (GLY54) [view usage] : c.14.1.0 |ClpP/crotonase |ClpP/crotonase |automated matches |automated matches |Mycobacterium avium [TaxId: 243243]
d3psna_ : (LYS73) (HIS115) [view usage] : d.159.1.7 |Metallo-dependent phosphatases |Metallo-dependent phosphatases |YfcE-like |Vacuolar protein sorting 29, VPS29 |Mouse (Mus musculus) [TaxId: 10090]
d2h0ba_ : (VAL448) (VAL475) [view usage] : b.29.1.4 |Concanavalin A-like lectins/glucanases |Concanavalin A-like lectins/glucanases |Laminin G-like module |Ligand-binding domain of neurexin 1beta |Cow (Bos taurus) [TaxId: 9913]
d3etrc2 : (PRO841) (ASN904) [view usage] : d.133.1.1 |Molybdenum cofactor-binding domain |Molybdenum cofactor-binding domain |Molybdenum cofactor-binding domain |automated matches |Cow (Bos taurus) [TaxId: 9913]
d3f46a1 : (ASN196) (MET241) [view usage] : c.2.1.6 |NAD(P)-binding Rossmann-fold domains |NAD(P)-binding Rossmann-fold domains |6-phosphogluconate dehydrogenase-like, N-terminal domain |5,10-methenyltetrahydromethanopterin hydrogenase, HMD |Methanocaldococcus jannaschii [TaxId: 2190]
d4ky8a2 : (VAL404) (ILE460) [view usage] : d.117.1.1 |Thymidylate synthase/dCMP hydroxymethylase |Thymidylate synthase/dCMP hydroxymethylase |Thymidylate synthase/dCMP hydroxymethylase |Bifunctional enzyme dihydrofolate reductase-thymidylate synthase, TS domain |Cryptosporidium hominis [TaxId: 237895]
d1akoa_ : (ARG90) (MET149) [view usage] : d.151.1.1 |DNase I-like |DNase I-like |DNase I-like |DNA-repair enzyme exonuclease III |Escherichia coli [TaxId: 562]
d2b0ja2 : (ASN196) (LYS240) [view usage] : c.2.1.6 |NAD(P)-binding Rossmann-fold domains |NAD(P)-binding Rossmann-fold domains |6-phosphogluconate dehydrogenase-like, N-terminal domain |5,10-methenyltetrahydromethanopterin hydrogenase, HMD |Methanocaldococcus jannaschii [TaxId: 2190]
d3q7ja2 : (GLU173) (VAL224) [view usage] : d.92.1.0 |Zincin-like |Metalloproteases ("zincins"), catalytic domain |automated matches |automated matches |Thermoplasma acidophilum [TaxId: 273075]
d3qkaa_ : (LEU4) (GLY55) [view usage] : c.14.1.0 |ClpP/crotonase |ClpP/crotonase |automated matches |automated matches |Mycobacterium marinum [TaxId: 216594]
d3i48a_ : (GLY131) (ASP194) [view usage] : d.151.1.0 |DNase I-like |DNase I-like |automated matches |automated matches |Staphylococcus aureus [TaxId: 561307]
d2gera1 : (PRO115) (GLU161) [view usage] : c.2.1.0 |NAD(P)-binding Rossmann-fold domains |NAD(P)-binding Rossmann-fold domains |automated matches |automated matches |Human (Homo sapiens) [TaxId: 9606]
d3i46a_ : (ASP127) (GLY192) [view usage] : d.151.1.0 |DNase I-like |DNase I-like |automated matches |automated matches |Staphylococcus aureus [TaxId: 561307]
d1sg4c_ : (ARG4) (SER56) [view usage] : c.14.1.3 |ClpP/crotonase |ClpP/crotonase |Crotonase-like |Dienoyl-CoA isomerase (delta3-delta2-enoyl-CoA isomerase) |Human (Homo sapiens) [TaxId: 9606]
List of distinct SCOP folds where this concept is used (in one or more of its domains):
c.1, b.82, c.2, d.159, i.1, b.29, d.117, d.92, c.14, c.45, c.37, d.151, b.60, d.126, d.108, d.133, c.97, c.50, c.122, c.61,
c.52, d.145, d.109, d.128, d.52, d.322