Tableau information
Concept source: d2q8ta_ amino acid (a.a.) range (MET31)(MET71)
nSSEs in this Concept: 4
String of secondary struct.elems. (SSEs) defining this concept: EEEH
Each SSE's a.a.range: (start resi) (end resi) SSEtype (H=Helix; E=Strand) followed by a numeric SSE ID:
(MET31) (GLU35) E1
(PRO43) (THR49) E2
(GLY52) (CYS56) E3
(ASP61) (MET71) H4
Orientation angles° of SSE-pairs; those in contact shown in bold font
E1
E2 166.1° E2
E3 -34.5° 157.6° E3
H4 -109.5° 65.9° -131.2°
Footnote: Inferred from this concept's usages (listed below) was the angular variance of 1σ = ±9.8° about each orientation angle shown above.
Loci of concept usages (shown as a range of a.a. residue ids) in SCOP(v2.05) domains, along with their brief legend taken from SCOP
d3ngza_ : (GLY16) (PHE77) [view usage] : c.55.3.5 |Ribonuclease H-like motif |Ribonuclease H-like |DnaQ-like 3'-5' exonuclease |automated matches |Escherichia coli [TaxId: 562]
d3nh0a_ : (GLY16) (PHE77) [view usage] : c.55.3.5 |Ribonuclease H-like motif |Ribonuclease H-like |DnaQ-like 3'-5' exonuclease |automated matches |Escherichia coli [TaxId: 562]
d2ffka_ : (LYS191) (ASP234) [view usage] : b.27.1.1 |Soluble secreted chemokine inhibitor, VCCI |Soluble secreted chemokine inhibitor, VCCI |Soluble secreted chemokine inhibitor, VCCI |automated matches |Rabbitpox virus [TaxId: 32606]
d2is3a_ : (GLY16) (GLY79) [view usage] : c.55.3.5 |Ribonuclease H-like motif |Ribonuclease H-like |DnaQ-like 3'-5' exonuclease |automated matches |Escherichia coli K-12 [TaxId: 83333]
d1pfba_ : (GLU29) (GLN74) [view usage] : b.34.13.2 |SH3-like barrel |Chromo domain-like |Chromo domain |Polycomb protein, Pc |Fruit fly (Drosophila melanogaster) [TaxId: 7227]
d4kb0a_ : (GLY16) (ASN78) [view usage] : c.55.3.5 |Ribonuclease H-like motif |Ribonuclease H-like |DnaQ-like 3'-5' exonuclease |automated matches |Escherichia coli [TaxId: 83333]
d1dola_ : (SER27) (LYS69) [view usage] : d.9.1.1 |IL8-like |Interleukin 8-like chemokines |Interleukin 8-like chemokines |Monocyte chemoattractant protein-1 (MCP-1, MCAF) |Human (Homo sapiens) [TaxId: 9606]
d1mgsa_ : (GLN24) (SER69) [view usage] : d.9.1.1 |IL8-like |Interleukin 8-like chemokines |Interleukin 8-like chemokines |Melanoma growth stimulating activity (MGSA) |Human (Homo sapiens) [TaxId: 9606]
d4ra8c_ : (ALA26) (SER69) [view usage] : d.9.1.1 |IL8-like |Interleukin 8-like chemokines |Interleukin 8-like chemokines |automated matches |Human (Homo sapiens) [TaxId: 9606]
d2nwga_ : (HIS25) (ASN67) [view usage] : d.9.1.1 |IL8-like |Interleukin 8-like chemokines |Interleukin 8-like chemokines |Stromal cell-derived factor-1 (SDF-1) |Human (Homo sapiens) [TaxId: 9606]
d3nh1a_ : (GLY16) (ASN78) [view usage] : c.55.3.5 |Ribonuclease H-like motif |Ribonuclease H-like |DnaQ-like 3'-5' exonuclease |automated matches |Escherichia coli [TaxId: 562]
d3ngzb_ : (GLY16) (PHE77) [view usage] : c.55.3.5 |Ribonuclease H-like motif |Ribonuclease H-like |DnaQ-like 3'-5' exonuclease |automated matches |Escherichia coli [TaxId: 562]
d1ckma2 : (ARG87) (GLY125) [view usage] : d.142.2.3 |ATP-grasp |DNA ligase/mRNA capping enzyme, catalytic domain |mRNA capping enzyme |RNA guanylyltransferase (mRNA capping enzyme), N-terminal domain |Chlorella virus PBCV-1 [TaxId: 10506]
d1khia2 : (LEU109) (GLY148) [view usage] : b.40.4.5 |OB-fold |Nucleic acid-binding proteins |Cold shock DNA-binding domain-like |C-terminal domain of eIF5a homologue (Hex1) |Fungus (Neurospora crassa) [TaxId: 5141]
d2pt7c_ : (GLU47) (LYS93) [view usage] : c.37.1.11 |P-loop containing nucleoside triphosphate hydrolases |P-loop containing nucleoside triphosphate hydrolases |RecA protein-like (ATPase-domain) |Hexameric traffic ATPase, HP0525 |Helicobacter pylori [TaxId: 210]
d2cs7a1 : (ILE17) (GLY54) [view usage] : d.9.2.1 |IL8-like |PhtA domain-like |PhtA domain-like |Pneumococcal histidine triad protein A, PhtA |Pneumococcus (Streptococcus pneumoniae) [TaxId: 1313]
d1qg7b_ : (HIS25) (GLU63) [view usage] : d.9.1.1 |IL8-like |Interleukin 8-like chemokines |Interleukin 8-like chemokines |Stromal cell-derived factor-1 (SDF-1) |Human (Homo sapiens) [TaxId: 9606]
d1fcda3 : (PRO331) (THR399) [view usage] : d.87.1.1 |CO dehydrogenase flavoprotein C-domain-like |FAD/NAD-linked reductases, dimerisation (C-terminal) domain |FAD/NAD-linked reductases, dimerisation (C-terminal) domain |Flavocytochrome c sulfide dehydrogenase, FCSD, flavin-binding subunit |Chromatium vinosum [TaxId: 1049]
d2z8la1 : (VAL31) (LYS66) [view usage] : b.40.2.2 |OB-fold |Bacterial enterotoxins |Superantigen toxins, N-terminal domain |Superantigen-like protein SET3 |Staphylococcus aureus [TaxId: 1280]
d1g91a_ : (GLU26) (LYS67) [view usage] : d.9.1.1 |IL8-like |Interleukin 8-like chemokines |Interleukin 8-like chemokines |Myeloid progenitor inhibitory factor-1 (MPIF-1) |Human (Homo sapiens) [TaxId: 9606]
d1k8ha_ : (ASP49) (GLY103) [view usage] : b.111.1.1 |Small protein B (SmpB) |Small protein B (SmpB) |Small protein B (SmpB) |Small protein B (SmpB) |Aquifex aeolicus [TaxId: 63363]
d2rsta_ : (LYS4) (GLN44) [view usage] : b.42.2.1 |beta-Trefoil |Ricin B-like lectins |Ricin B-like |29-kDa galactose-binding lectin |Common earthworm (Lumbricus terrestris) [TaxId: 6398]
d1pdqa_ : (GLU29) (TYR72) [view usage] : b.34.13.2 |SH3-like barrel |Chromo domain-like |Chromo domain |Polycomb protein, Pc |Fruit fly (Drosophila melanogaster) [TaxId: 7227]
d3gv3a_ : (HIS25) (LEU66) [view usage] : d.9.1.1 |IL8-like |Interleukin 8-like chemokines |Interleukin 8-like chemokines |Stromal cell-derived factor-1 (SDF-1) |Human (Homo sapiens) [TaxId: 9606]
d1qg7a_ : (HIS25) (ASN67) [view usage] : d.9.1.1 |IL8-like |Interleukin 8-like chemokines |Interleukin 8-like chemokines |Stromal cell-derived factor-1 (SDF-1) |Human (Homo sapiens) [TaxId: 9606]
d3nh0b_ : (GLY16) (PHE77) [view usage] : c.55.3.5 |Ribonuclease H-like motif |Ribonuclease H-like |DnaQ-like 3'-5' exonuclease |automated matches |Escherichia coli [TaxId: 562]
d1o80b_ : (LYS26) (LYS70) [view usage] : d.9.1.1 |IL8-like |Interleukin 8-like chemokines |Interleukin 8-like chemokines |IP-10/CXCL10 |Human (Homo sapiens) [TaxId: 9606]
d3ngyb_ : (GLY16) (ASN78) [view usage] : c.55.3.5 |Ribonuclease H-like motif |Ribonuclease H-like |DnaQ-like 3'-5' exonuclease |automated matches |Escherichia coli [TaxId: 562]
d3fpub_ : (ASP27) (LEU66) [view usage] : d.9.1.1 |IL8-like |Interleukin 8-like chemokines |Interleukin 8-like chemokines |automated matches |Human (Homo sapiens) [TaxId: 9606]
d2j7za_ : (HIS25) (ASN67) [view usage] : d.9.1.1 |IL8-like |Interleukin 8-like chemokines |Interleukin 8-like chemokines |Stromal cell-derived factor-1 (SDF-1) |Human (Homo sapiens) [TaxId: 9606]
d1icwb_ : (GLU24) (SER72) [view usage] : d.9.1.1 |IL8-like |Interleukin 8-like chemokines |Interleukin 8-like chemokines |Interleukin-8, IL-8 |Human (Homo sapiens) [TaxId: 9606]
d1a15b_ : (HIS25) (LEU62) [view usage] : d.9.1.1 |IL8-like |Interleukin 8-like chemokines |Interleukin 8-like chemokines |Stromal cell-derived factor-1 (SDF-1) |Human (Homo sapiens) [TaxId: 9606]
d1hwnb2 : (VAL137) (GLN174) [view usage] : b.42.2.1 |beta-Trefoil |Ricin B-like lectins |Ricin B-like |Plant cytotoxin B-chain (lectin) |Sambucus ebulus, ebulin [TaxId: 28503]
d2k1ba_ : (ARG10) (GLU54) [view usage] : b.34.13.0 |SH3-like barrel |Chromo domain-like |automated matches |automated matches |Human (Homo sapiens) [TaxId: 9606]
d4uaib_ : (HIS25) (LEU66) [view usage] : d.9.1.1 |IL8-like |Interleukin 8-like chemokines |Interleukin 8-like chemokines |Stromal cell-derived factor-1 (SDF-1) |Human (Homo sapiens) [TaxId: 9606]
d1ilr1_ : (LYS9) (GLU43) [view usage] : b.42.1.2 |beta-Trefoil |Cytokine |Interleukin-1 (IL-1) |Interleukin-1 receptor antagonist protein |Human (Homo sapiens) [TaxId: 9606]
d2cs7c_ : (ILE17) (GLY54) [view usage] : d.9.2.1 |IL8-like |PhtA domain-like |PhtA domain-like |Pneumococcal histidine triad protein A, PhtA |Pneumococcus (Streptococcus pneumoniae) [TaxId: 1313]
List of distinct SCOP folds where this concept is used (in one or more of its domains):
b.40, c.37, c.55, b.42, d.142, d.87, b.34, d.9, b.27, b.111