Tableau information
Concept source: d3dkca_ amino acid (a.a.) range (GLY1090)(ILE1118)
nSSEs in this Concept: 4
String of secondary struct.elems. (SSEs) defining this concept: EEEH
Each SSE's a.a.range: (start resi) (end resi) SSEtype (H=Helix; E=Strand) followed by a numeric SSE ID:
(GLY1090) (HIS1094) E1
(GLY1095) (ASP1099) E2
(LYS1103) (ASN1113) E3
(ASN1113) (ILE1118) H4
Orientation angles° of SSE-pairs; those in contact shown in bold font
E1
E2 -65.2° E2
E3 161.4° 130.7° E3
H4 -109.8° 62.6° -76.2°
Footnote: Inferred from this concept's usages (listed below) was the angular variance of 1σ = ±13.0° about each orientation angle shown above.
Loci of concept usages (shown as a range of a.a. residue ids) in SCOP(v2.05) domains, along with their brief legend taken from SCOP
d3rf1b_ : (VAL136) (LEU168) [view usage] : d.104.1.1 |Class II aaRS and biotin synthetases |Class II aaRS and biotin synthetases |Class II aminoacyl-tRNA synthetase (aaRS)-like, catalytic domain |automated matches |Campylobacter jejuni [TaxId: 354242]
d1ac0a_ : (THR513) (THR545) [view usage] : b.3.1.1 |Prealbumin-like |Starch-binding domain-like |Starch-binding domain |Glucoamylase, granular starch-binding domain |Aspergillus niger [TaxId: 5061]
d3t04d_ : (LYS13) (GLN36) [view usage] : b.1.2.0 |Immunoglobulin-like beta-sandwich |Fibronectin type III |automated matches |automated matches |Human (Homo sapiens) [TaxId: 9606]
d1m3ea2 : (LEU309) (GLY353) [view usage] : c.124.1.3 |NagB/RpiA/CoA transferase-like |NagB/RpiA/CoA transferase-like |CoA transferase beta subunit-like |Succinate:CoA transferase, C-terminal domain |Pig (Sus scrofa) [TaxId: 9823]
d2ilxa_ : (PHE102) (TRP130) [view usage] : d.61.1.3 |LigT-like |LigT-like |2',3'-cyclic nucleotide 3'-phosphodiesterase, catalytic domain |2',3'-cyclic nucleotide 3'-phosphodiesterase, catalytic domain |Norway rat (Rattus norvegicus) [TaxId: 10116]
d2vn5a_ : (LEU13) (LYS41) [view usage] : b.2.2.2 |Common fold of diphtheria toxin/transcription factors/cytochrome f |Carbohydrate-binding domain |Cellulose-binding domain family III |Cohesin domain |Clostridium cellulolyticum [TaxId: 1521]
d3dkca_ : (GLY1090) (ILE1118) [view usage] : d.144.1.7 |Protein kinase-like (PK-like) |Protein kinase-like (PK-like) |Protein kinases, catalytic subunit |Hepatocyte growth factor receptor, c-MET |Human (Homo sapiens) [TaxId: 9606]
d3tjga_ : (PRO86) (LYS109) [view usage] : c.47.1.10 |Thioredoxin fold |Thioredoxin-like |Glutathione peroxidase-like |automated matches |Human (Homo sapiens) [TaxId: 9606]
d1lxga_ : (HIS18) (PRO64) [view usage] : g.7.1.1 |Snake toxin-like |Snake toxin-like |Snake venom toxins |alpha-Cobratoxin |Monocled cobra (Naja naja kaouthia) [TaxId: 8649]
d2h01a1 : (PRO4) (LYS28) [view usage] : c.47.1.10 |Thioredoxin fold |Thioredoxin-like |Glutathione peroxidase-like |Thioredoxin peroxidase 2 (thioredoxin peroxidase B, 2-cys peroxiredoxin) |Plasmodium yoelii [TaxId: 5861]
d1j58a_ : (MSE48) (GLU77) [view usage] : b.82.1.2 |Double-stranded beta-helix |RmlC-like cupins |Germin/Seed storage 7S protein |Oxalate decarboxylase OxdC (YvrK) |Bacillus subtilis [TaxId: 1423]
d1l3ja_ : (MET48) (GLU77) [view usage] : b.82.1.2 |Double-stranded beta-helix |RmlC-like cupins |Germin/Seed storage 7S protein |Oxalate decarboxylase OxdC (YvrK) |Bacillus subtilis [TaxId: 1423]
d3exec_ : (ASN3) (LYS56) [view usage] : c.36.1.11 |Thiamin diphosphate-binding fold (THDP-binding) |Thiamin diphosphate-binding fold (THDP-binding) |Branched-chain alpha-keto acid dehydrogenase PP module |E1-beta subunit of pyruvate dehydrogenase (PP module) |Human (Homo sapiens) [TaxId: 9606]
d1e8ka_ : (MET1) (THR41) [view usage] : b.62.1.1 |Cyclophilin-like |Cyclophilin-like |Cyclophilin (peptidylprolyl isomerase) |Cyclophilin (eukaryotic) |Caenorhabditis elegans, isoform 3 [TaxId: 6239]
d3myrd_ : (GLY1279) (GLN1325) [view usage] : e.18.1.0 |HydB/Nqo4-like |HydB/Nqo4-like |automated matches |automated matches |Allochromatium vinosum [TaxId: 1049]
d2lssa_ : (LYS10) (ALA39) [view usage] : b.40.4.0 |OB-fold |Nucleic acid-binding proteins |automated matches |automated matches |Rickettsia rickettsii [TaxId: 392021]
d2fiab_ : (PHE62) (GLY91) [view usage] : d.108.1.1 |Acyl-CoA N-acyltransferases (Nat) |Acyl-CoA N-acyltransferases (Nat) |N-acetyl transferase, NAT |Probable acetyltransferase EF1919 |Enterococcus faecalis [TaxId: 1351]
d1dxrm_ : (GLN9) (GLY42) [view usage] : f.26.1.1 |Bacterial photosystem II reaction centre, L and M subunits |Bacterial photosystem II reaction centre, L and M subunits |Bacterial photosystem II reaction centre, L and M subunits |M (medium) subunit |Rhodopseudomonas viridis [TaxId: 1079]
d3mkha1 : (ASP183) (GLY220) [view usage] : e.6.1.0 |Acyl-CoA dehydrogenase NM domain-like |Acyl-CoA dehydrogenase NM domain-like |automated matches |automated matches |Podospora anserina [TaxId: 5145]
d1i8da1 : (GLY8) (ASP34) [view usage] : b.43.4.3 |Reductase/isomerase/elongation factor common domain |Riboflavin synthase domain-like |Riboflavin synthase |Riboflavin synthase |Escherichia coli [TaxId: 562]
d1m3eb2 : (LEU309) (GLY353) [view usage] : c.124.1.3 |NagB/RpiA/CoA transferase-like |NagB/RpiA/CoA transferase-like |CoA transferase beta subunit-like |Succinate:CoA transferase, C-terminal domain |Pig (Sus scrofa) [TaxId: 9823]
d1we0a1 : (GLY4) (LYS32) [view usage] : c.47.1.10 |Thioredoxin fold |Thioredoxin-like |Glutathione peroxidase-like |Alkyl hydroperoxide reductase AhpC |Amphibacillus xylanus [TaxId: 1449]
d1o7za_ : (LYS26) (VAL68) [view usage] : d.9.1.1 |IL8-like |Interleukin 8-like chemokines |Interleukin 8-like chemokines |IP-10/CXCL10 |Human (Homo sapiens) [TaxId: 9606]
d3ayxa_ : (ASN301) (VAL344) [view usage] : e.18.1.0 |HydB/Nqo4-like |HydB/Nqo4-like |automated matches |automated matches |Hydrogenovibrio marinus [TaxId: 28885]
List of distinct SCOP folds where this concept is used (in one or more of its domains):
b.82, c.124, e.18, d.144, b.40, c.36, d.104, c.47, e.6, f.26, b.2, b.1, d.108, b.62, b.43, b.3, g.7, d.9, d.61