Tableau information
Concept source: d2cqda1 amino acid (a.a.) range (GLY35)(LYS70)
nSSEs in this Concept: 4
String of secondary struct.elems. (SSEs) defining this concept: EEEH
Each SSE's a.a.range: (start resi) (end resi) SSEtype (H=Helix; E=Strand) followed by a numeric SSE ID:
(GLY35) (GLU39) E1
(GLU39) (ILE43) E2
(GLY55) (ASP61) E3
(ASP61) (LYS70) H4
Orientation angles° of SSE-pairs; those in contact shown in bold font
E1
E2 60.1° E2
E3 127.0° 165.7° E3
H4 -101.9° -44.4° 131.1°
Footnote: Inferred from this concept's usages (listed below) was the angular variance of 1σ = ±13.0° about each orientation angle shown above.
Loci of concept usages (shown as a range of a.a. residue ids) in SCOP(v2.05) domains, along with their brief legend taken from SCOP
d3vtta_ : (ASN582) (CYS611) [view usage] : b.1.18.0 |Immunoglobulin-like beta-sandwich |E set domains |automated matches |automated matches |Dengue virus type 3 [TaxId: 408870]
d1si7a_ : (LEU302) (GLU336) [view usage] : d.265.1.4 |Pseudouridine synthase |Pseudouridine synthase |tRNA pseudouridine synthase TruD |tRNA pseudouridine synthase TruD |Escherichia coli [TaxId: 562]
d1pd5k_ : (PRO169) (GLU214) [view usage] : c.43.1.1 |CoA-dependent acyltransferases |CoA-dependent acyltransferases |CAT-like |Chloramphenicol acetyltransferase, CAT |Escherichia coli [TaxId: 562]
d1pyqb_ : (GLY53) (ALA80) [view usage] : b.52.2.1 |Double psi beta-barrel |ADC-like |Pyruvoyl dependent aspartate decarboxylase, ADC |Pyruvoyl dependent aspartate decarboxylase, ADC |Escherichia coli [TaxId: 562]
d1zl3a2 : (PRO147) (GLY192) [view usage] : d.265.1.2 |Pseudouridine synthase |Pseudouridine synthase |Pseudouridine synthase II TruB |Pseudouridine synthase II TruB |Escherichia coli [TaxId: 562]
d4qgra_ : (VAL274) (GLY308) [view usage] : c.67.1.0 |PLP-dependent transferase-like |PLP-dependent transferases |automated matches |automated matches |Brucella abortus [TaxId: 359391]
d1qy6a_ : (GLY78) (VAL112) [view usage] : b.47.1.1 |Trypsin-like serine proteases |Trypsin-like serine proteases |Prokaryotic proteases |V8 protease |Staphylococcus aureus [TaxId: 1280]
d1zoxa_ : (PRO3) (TYR31) [view usage] : b.1.1.0 |Immunoglobulin-like beta-sandwich |Immunoglobulin |automated matches |automated matches |Mouse (Mus musculus) [TaxId: 10090]
d3veca_ : (GLY237) (GLY281) [view usage] : d.58.4.0 |Ferredoxin-like |Dimeric alpha+beta barrel |automated matches |automated matches |Rhodococcus jostii [TaxId: 101510]
d4qgrb_ : (VAL274) (GLY308) [view usage] : c.67.1.0 |PLP-dependent transferase-like |PLP-dependent transferases |automated matches |automated matches |Brucella abortus [TaxId: 359391]
d3vttb_ : (ASN582) (CYS611) [view usage] : b.1.18.0 |Immunoglobulin-like beta-sandwich |E set domains |automated matches |automated matches |Dengue virus type 3 [TaxId: 408870]
d1bg0a2 : (ASN305) (ALA355) [view usage] : d.128.1.2 |Glutamine synthetase/guanido kinase |Glutamine synthetase/guanido kinase |Guanido kinase catalytic domain |Arginine kinase, C-terminal domain |Horseshoe crab (Limulus polyphemus) [TaxId: 6850]
d1ckma2 : (GLY125) (LYS173) [view usage] : d.142.2.3 |ATP-grasp |DNA ligase/mRNA capping enzyme, catalytic domain |mRNA capping enzyme |RNA guanylyltransferase (mRNA capping enzyme), N-terminal domain |Chlorella virus PBCV-1 [TaxId: 10506]
d1ztxe_ : (ALA308) (CYS336) [view usage] : b.1.18.4 |Immunoglobulin-like beta-sandwich |E set domains |Class II viral fusion proteins C-terminal domain |automated matches |West Nile virus [TaxId: 11082]
d1tgoa2 : (GLY533) (LEU571) [view usage] : e.8.1.1 |DNA/RNA polymerases |DNA/RNA polymerases |DNA polymerase I |Family B DNA polymerase |Thermococcus gorgonarius [TaxId: 71997]
d1y6nr2 : (GLU101) (PHE140) [view usage] : b.1.2.1 |Immunoglobulin-like beta-sandwich |Fibronectin type III |Fibronectin type III |Interleukin-10 receptor 1, IL-10R1 |Human (Homo sapiens) [TaxId: 9606]
d1q23k_ : (PRO169) (GLU214) [view usage] : c.43.1.1 |CoA-dependent acyltransferases |CoA-dependent acyltransferases |CAT-like |Chloramphenicol acetyltransferase, CAT |Escherichia coli [TaxId: 562]
d1hxma1 : (ALA1) (TYR34) [view usage] : b.1.1.1 |Immunoglobulin-like beta-sandwich |Immunoglobulin |V set domains (antibody variable domain-like) |T-cell antigen receptor |Human (Homo sapiens), gamma-chain [TaxId: 9606]
d3vedb_ : (GLY237) (GLY281) [view usage] : d.58.4.0 |Ferredoxin-like |Dimeric alpha+beta barrel |automated matches |automated matches |Rhodococcus jostii [TaxId: 101510]
d3ovwa_ : (LYS7) (GLY39) [view usage] : b.29.1.10 |Concanavalin A-like lectins/glucanases |Concanavalin A-like lectins/glucanases |Glycosyl hydrolase family 7 catalytic core |Cellobiohydrolase I (cellulase, Endoglucanase I, CBH1) |Fungus (Fusarium oxysporum) [TaxId: 5507]
d3veeb_ : (GLY237) (GLY281) [view usage] : d.58.4.0 |Ferredoxin-like |Dimeric alpha+beta barrel |automated matches |automated matches |Rhodococcus jostii [TaxId: 101510]
d4v1aa_ : (SER378) (TYR418) [view usage] : i.1.1.2 |Ribosome and ribosomal fragments |Ribosome and ribosomal fragments |Large subunit |Eukaryotic, mitochondrial (54S or 39S subunit) |Pig (Sus scrofa) [TaxId: 9823]
d2p2ra_ : (GLN320) (GLU358) [view usage] : d.51.1.1 |Eukaryotic type KH-domain (KH-domain type I) |Eukaryotic type KH-domain (KH-domain type I) |Eukaryotic type KH-domain (KH-domain type I) |Poly(RC)-binding protein 2 |Human (Homo sapiens) [TaxId: 9606]
d1ovwa_ : (LYS7) (GLY39) [view usage] : b.29.1.10 |Concanavalin A-like lectins/glucanases |Concanavalin A-like lectins/glucanases |Glycosyl hydrolase family 7 catalytic core |Cellobiohydrolase I (cellulase, Endoglucanase I, CBH1) |Fungus (Fusarium oxysporum) [TaxId: 5507]
d4ffya_ : (GLY304) (CYS333) [view usage] : b.1.18.4 |Immunoglobulin-like beta-sandwich |E set domains |Class II viral fusion proteins C-terminal domain |automated matches |Dengue virus 1 [TaxId: 11053]
d1sb7a_ : (MSE301) (ILE338) [view usage] : d.265.1.4 |Pseudouridine synthase |Pseudouridine synthase |tRNA pseudouridine synthase TruD |tRNA pseudouridine synthase TruD |Escherichia coli [TaxId: 562]
d2f91a1 : (SER179) (ALA241) [view usage] : b.47.1.2 |Trypsin-like serine proteases |Trypsin-like serine proteases |Eukaryotic proteases |Trypsin(ogen) |Narrow-clawed crayfish (Pontastacus leptodactylus) [TaxId: 6717]
d3a2fa2 : (GLY534) (LYS559) [view usage] : e.8.1.0 |DNA/RNA polymerases |DNA/RNA polymerases |automated matches |automated matches |Pyrococcus furiosus [TaxId: 2261]
d1a02n2 : (THR540) (GLU576) [view usage] : b.2.5.3 |Common fold of diphtheria toxin/transcription factors/cytochrome f |p53-like transcription factors |Rel/Dorsal transcription factors, DNA-binding domain |T-cell transcription factor NFAT1 (NFATC), DNA-binding domain |Human (Homo sapiens) [TaxId: 9606]
d1xkra_ : (SER161) (GLU199) [view usage] : d.252.1.1 |CheC-like |CheC-like |CheC-like |Chemotaxis protein CheC |Thermotoga maritima [TaxId: 2336]
d1j7vr2 : (GLU101) (PHE140) [view usage] : b.1.2.1 |Immunoglobulin-like beta-sandwich |Fibronectin type III |Fibronectin type III |Interleukin-10 receptor 1, IL-10R1 |Human (Homo sapiens) [TaxId: 9606]
d3claa_ : (PRO171) (SER216) [view usage] : c.43.1.1 |CoA-dependent acyltransferases |CoA-dependent acyltransferases |CAT-like |Chloramphenicol acetyltransferase, CAT |Escherichia coli [TaxId: 562]
d3u5ch_ : (PRO40) (LEU67) [view usage] : i.1.1.1 |Ribosome and ribosomal fragments |Ribosome and ribosomal fragments |Ribosome complexes |Eukaryotic, cytoplasmic (80S ribosome functional complex) |Saccharomyces cerevisiae [TaxId: 559292]
d3vecb_ : (GLY237) (GLY281) [view usage] : d.58.4.0 |Ferredoxin-like |Dimeric alpha+beta barrel |automated matches |automated matches |Rhodococcus jostii [TaxId: 101510]
d3r8ja_ : (LYS84) (ASP118) [view usage] : d.60.1.0 |Probable bacterial effector-binding domain |Probable bacterial effector-binding domain |automated matches |automated matches |Human (Homo sapiens) [TaxId: 9606]
d3irca_ : (GLY304) (CYS333) [view usage] : b.1.18.4 |Immunoglobulin-like beta-sandwich |E set domains |Class II viral fusion proteins C-terminal domain |automated matches |Dengue virus 1 [TaxId: 11053]
d2a7lb_ : (SER29) (SER68) [view usage] : d.20.1.1 |UBC-like |UBC-like |UBC-related |Ubiquitin-protein ligase W (E2 W) |Human (Homo sapiens) [TaxId: 9606]
List of distinct SCOP folds where this concept is used (in one or more of its domains):
e.8, c.67, d.58, i.1, b.29, b.47, b.2, b.1, d.20, c.43, b.52, d.142, d.128, d.51, d.265, d.60, d.252