Tableau information
Concept source: d2eoba_ amino acid (a.a.) range (LYS64)(GLU96)
nSSEs in this Concept: 4
String of secondary struct.elems. (SSEs) defining this concept: EEEH
Each SSE's a.a.range: (start resi) (end resi) SSEtype (H=Helix; E=Strand) followed by a numeric SSE ID:
(LYS64) (GLY74) E1
(HIS76) (GLY80) E2
(SER82) (GLU86) E3
(LEU88) (GLU96) H4
Orientation angles° of SSE-pairs; those in contact shown in bold font
E1
E2 143.9° E2
E3 -70.7° 145.4° E3
H4 130.2° -41.4° 127.3°
Footnote: Inferred from this concept's usages (listed below) was the angular variance of 1σ = ±10.6° about each orientation angle shown above.
Loci of concept usages (shown as a range of a.a. residue ids) in SCOP(v2.05) domains, along with their brief legend taken from SCOP
d4f7ea1 : (ASN108) (ASN151) [view usage] : d.19.1.1 |MHC antigen-recognition domain |MHC antigen-recognition domain |MHC antigen-recognition domain |CD1, alpha-1 and alpha-2 domains |Cow (Bos taurus) [TaxId: 9913]
d1cd1a2 : (ALA111) (GLN154) [view usage] : d.19.1.1 |MHC antigen-recognition domain |MHC antigen-recognition domain |MHC antigen-recognition domain |CD1, alpha-1 and alpha-2 domains |Mouse (Mus musculus) [TaxId: 10090]
d2ysda_ : (ASN18) (ASN48) [view usage] : b.72.1.1 |WW domain-like |WW domain |WW domain |automated matches |Human (Homo sapiens) [TaxId: 9606]
d4i4zb_ : (ASP2) (ASP52) [view usage] : c.14.1.0 |ClpP/crotonase |ClpP/crotonase |automated matches |automated matches |Synechocystis sp. [TaxId: 1111708]
d4dwrb_ : (PRO4) (ASN40) [view usage] : d.261.1.1 |Hypothetical protein PH1602 |Hypothetical protein PH1602 |Hypothetical protein PH1602 |automated matches |Pyrococcus horikoshii [TaxId: 53953]
d2awja_ : (PRO13) (THR65) [view usage] : d.22.1.1 |GFP-like |GFP-like |Fluorescent proteins |Green fluorescent protein, GFP |Jellyfish (Aequorea victoria) [TaxId: 6100]
d1l26a_ : (LYS16) (ALA49) [view usage] : d.2.1.3 |Lysozyme-like |Lysozyme-like |Phage lysozyme |Phage T4 lysozyme |Bacteriophage T4 [TaxId: 10665]
d4dhjc_ : (GLY50) (ALA114) [view usage] : d.20.1.1 |UBC-like |UBC-like |UBC-related |Ubiquitin conjugating enzyme, UBC |Human (Homo sapiens), ubc13 [TaxId: 9606]
d2k7ia1 : (LYS3) (ARG47) [view usage] : d.348.1.1 |YegP-like |YegP-like |YegP-like |Uncharacterized protein Atu0232 |Agrobacterium tumefaciens [TaxId: 358]
d2d9xa_ : (ASN9) (GLN49) [view usage] : b.55.1.0 |PH domain-like barrel |PH domain-like |automated matches |automated matches |Human (Homo sapiens) [TaxId: 9606]
d1yzya1 : (THR367) (LEU412) [view usage] : c.146.1.1 |YgbK-like |YgbK-like |YgbK-like |Hypothetical protein HI1011 |Haemophilus influenzae [TaxId: 727]
d1tw6a_ : (GLY112) (LYS146) [view usage] : g.52.1.1 |Inhibitor of apoptosis (IAP) repeat |Inhibitor of apoptosis (IAP) repeat |Inhibitor of apoptosis (IAP) repeat |BIR-containing protein 7 (ML-IAP, livin) |Human (Homo sapiens) [TaxId: 9606]
d1gfla_ : (PRO13) (SER65) [view usage] : d.22.1.1 |GFP-like |GFP-like |Fluorescent proteins |Green fluorescent protein, GFP |Jellyfish (Aequorea victoria) [TaxId: 6100]
d2gw6a1 : (HIS43) (GLY97) [view usage] : c.52.2.1 |Restriction endonuclease-like |tRNA-intron endonuclease catalytic domain-like |tRNA-intron endonuclease catalytic domain-like |tRNA-splicing endonuclease subunit Sen15 |Human (Homo sapiens) [TaxId: 9606]
d1gqea_ : (LEU239) (GLN308) [view usage] : e.38.1.1 |Release factor |Release factor |Release factor |Polypeptide chain release factor 2 (RF2) |Escherichia coli [TaxId: 562]
d2d2qb2 : (GLY202) (PRO236) [view usage] : b.55.1.0 |PH domain-like barrel |PH domain-like |automated matches |automated matches |Mouse (Mus musculus) [TaxId: 10090]
d1m2vb5 : (PHE241) (TYR278) [view usage] : g.41.10.1 |Rubredoxin-like |Zn-finger domain of Sec23/24 |Zn-finger domain of Sec23/24 |Sec24 |Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
d1gcca_ : (GLY148) (MET193) [view usage] : d.10.1.2 |DNA-binding domain |DNA-binding domain |GCC-box binding domain |GCC-box binding domain |Thale cress (Arabidopsis thaliana) [TaxId: 3702]
d1smxa_ : (LYS43) (LEU94) [view usage] : b.40.4.5 |OB-fold |Nucleic acid-binding proteins |Cold shock DNA-binding domain-like |S1-domain of Ribonuclease E |Escherichia coli [TaxId: 562]
d2r6ib_ : (THR38) (ALA81) [view usage] : d.381.1.1 |ATP12-like |ATP12-like |ATP12-like |Uncharacterized protein Atu1473 |Agrobacterium tumefaciens [TaxId: 358]
d1usvd_ : (LYS70) (ALA148) [view usage] : d.83.2.1 |Aha1/BPI domain-like |Activator of Hsp90 ATPase, Aha1 |Activator of Hsp90 ATPase, Aha1 |Activator of Hsp90 ATPase, Aha1 |Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
d1yfka_ : (LEU208) (ALA245) [view usage] : c.60.1.1 |Phosphoglycerate mutase-like |Phosphoglycerate mutase-like |Cofactor-dependent phosphoglycerate mutase |automated matches |Human (Homo sapiens) [TaxId: 9606]
d1yhgb_ : (GLY310) (THR363) [view usage] : d.22.1.1 |GFP-like |GFP-like |Fluorescent proteins |automated matches |Jellyfish (Aequorea victoria) [TaxId: 6100]
d1yhga_ : (GLY10) (SER66) [view usage] : d.22.1.1 |GFP-like |GFP-like |Fluorescent proteins |automated matches |Jellyfish (Aequorea victoria) [TaxId: 6100]
d1szva_ : (PHE71) (LEU115) [view usage] : d.110.7.1 |Profilin-like |Roadblock/LC7 domain |Roadblock/LC7 domain |automated matches |Mouse (Mus musculus) [TaxId: 10090]
d4dwra_ : (PRO4) (ASP41) [view usage] : d.261.1.1 |Hypothetical protein PH1602 |Hypothetical protein PH1602 |Hypothetical protein PH1602 |automated matches |Pyrococcus horikoshii [TaxId: 53953]
d3keea_ : (ASP103) (LYS136) [view usage] : b.47.1.3 |Trypsin-like serine proteases |Trypsin-like serine proteases |Viral proteases |automated matches |Hepatitis C virus [TaxId: 11103]
d1y8fa_ : (VAL571) (LEU611) [view usage] : g.49.1.0 |Cysteine-rich domain |Cysteine-rich domain |automated matches |automated matches |Norway rat (Rattus norvegicus) [TaxId: 10116]
d1uc2a_ : (PRO4) (ASN40) [view usage] : d.261.1.1 |Hypothetical protein PH1602 |Hypothetical protein PH1602 |Hypothetical protein PH1602 |Hypothetical protein PH1602 |Pyrococcus horikoshii [TaxId: 53953]
d1mwpa_ : (PRO32) (PRO78) [view usage] : d.170.2.1 |SRCR-like |A heparin-binding domain |A heparin-binding domain |N-terminal domain of the amyloid precursor protein |Human (Homo sapiens) [TaxId: 9606]
d3u5cx_ : (GLU55) (ASP97) [view usage] : i.1.1.1 |Ribosome and ribosomal fragments |Ribosome and ribosomal fragments |Ribosome complexes |Eukaryotic, cytoplasmic (80S ribosome functional complex) |Saccharomyces cerevisiae [TaxId: 559292]
d1el6a_ : (VAL94) (PHE140) [view usage] : d.182.1.1 |Baseplate structural protein gp11 |Baseplate structural protein gp11 |Baseplate structural protein gp11 |Baseplate structural protein gp11 |Bacteriophage T4 [TaxId: 10665]
d2f8sa2 : (TYR616) (TYR667) [view usage] : c.55.3.10 |Ribonuclease H-like motif |Ribonuclease H-like |PIWI domain |automated matches |Aquifex aeolicus [TaxId: 63363]
d1ttea2 : (GLY50) (GLN114) [view usage] : d.20.1.1 |UBC-like |UBC-like |UBC-related |Ubiquitin conjugating enzyme, UBC |Baker's yeast (Saccharomyces cerevisiae), ubc1 [TaxId: 4932]
d1stzb2 : (VAL150) (LEU194) [view usage] : d.110.2.3 |Profilin-like |GAF domain-like |HrcA C-terminal domain-like |Heat-inducible transcription repressor HrcA, C-terminal domain |Thermotoga maritima [TaxId: 2336]
d176la_ : (LYS16) (ILE50) [view usage] : d.2.1.3 |Lysozyme-like |Lysozyme-like |Phage lysozyme |Phage T4 lysozyme |Bacteriophage T4 [TaxId: 10665]
d4jfna_ : (PRO32) (TYR77) [view usage] : d.170.2.1 |SRCR-like |A heparin-binding domain |A heparin-binding domain |automated matches |Human (Homo sapiens) [TaxId: 9606]
d1f9xa_ : (GLY288) (TYR324) [view usage] : g.52.1.1 |Inhibitor of apoptosis (IAP) repeat |Inhibitor of apoptosis (IAP) repeat |Inhibitor of apoptosis (IAP) repeat |BIR domains of XIAP |Human (Homo sapiens) [TaxId: 9606]
d2gw6b_ : (HIS343) (GLN396) [view usage] : c.52.2.1 |Restriction endonuclease-like |tRNA-intron endonuclease catalytic domain-like |tRNA-intron endonuclease catalytic domain-like |tRNA-splicing endonuclease subunit Sen15 |Human (Homo sapiens) [TaxId: 9606]
d151la_ : (LYS16) (ALA49) [view usage] : d.2.1.3 |Lysozyme-like |Lysozyme-like |Phage lysozyme |Phage T4 lysozyme |Bacteriophage T4 [TaxId: 10665]
d2bpdb_ : (GLY181) (CYS219) [view usage] : d.169.1.0 |C-type lectin-like |C-type lectin-like |automated matches |automated matches |Mouse (Mus musculus) [TaxId: 10090]
d1p4ra2 : (SER202) (ASP242) [view usage] : c.97.1.4 |Cytidine deaminase-like |Cytidine deaminase-like |AICAR transformylase domain of bifunctional purine biosynthesis enzyme ATIC |AICAR transformylase domain of bifunctional purine biosynthesis enzyme ATIC |Human (Homo sapiens) [TaxId: 9606]
d4lsya_ : (PHE56) (PHE88) [view usage] : d.298.1.2 |RelE-like |RelE-like |RelE-like |automated matches |Helicobacter pylori [TaxId: 85962]
List of distinct SCOP folds where this concept is used (in one or more of its domains):
i.1, b.47, c.14, b.40, c.55, d.2, d.169, d.261, c.60, c.97, d.20, d.110, d.19, b.55, c.52, g.52, d.93, d.298, e.38, g.41,
d.83, c.146, d.22, d.182, d.381, d.10, g.49, b.72, d.348, d.170