Tableau information
Concept source: d2yrwa3 amino acid (a.a.) range (GLY362)(ALA400)
nSSEs in this Concept: 4
String of secondary struct.elems. (SSEs) defining this concept: EEEH
Each SSE's a.a.range: (start resi) (end resi) SSEtype (H=Helix; E=Strand) followed by a numeric SSE ID:
(GLY362) (GLU366) E1
(ALA369) (GLY374) E2
(VAL377) (LYS383) E3
(THR386) (ALA400) H4
Orientation angles° of SSE-pairs; those in contact shown in bold font
E1
E2 149.3° E2
E3 -110.3° 100.3° E3
H4 30.7° -120.3° 138.5°
Footnote: Inferred from this concept's usages (listed below) was the angular variance of 1σ = ±13.0° about each orientation angle shown above.
Loci of concept usages (shown as a range of a.a. residue ids) in SCOP(v2.05) domains, along with their brief legend taken from SCOP
d1vrxa_ : (TYR5) (GLY57) [view usage] : c.1.8.3 |TIM beta/alpha-barrel |(Trans)glycosidases |beta-glycanases |Endocellulase E1 |Acidothermus cellulolyticus [TaxId: 28049]
d2ex6a_ : (GLY33) (GLY77) [view usage] : e.3.1.3 |beta-lactamase/transpeptidase-like |beta-lactamase/transpeptidase-like |Dac-like |DD-carboxypeptidase DacB |Escherichia coli [TaxId: 562]
d3lp8a3 : (ALA365) (ASP403) [view usage] : b.84.2.0 |Barrel-sandwich hybrid |Rudiment single hybrid motif |automated matches |automated matches |Ehrlichia chaffeensis [TaxId: 205920]
d2cx9a2 : (GLY198) (LEU231) [view usage] : e.6.1.1 |Acyl-CoA dehydrogenase NM domain-like |Acyl-CoA dehydrogenase NM domain-like |Medium chain acyl-CoA dehydrogenase, NM (N-terminal and middle) domains |Acyl-CoA dehydrogenase |Thermus thermophilus [TaxId: 274]
d2qk4b3 : (ALA370) (ILE410) [view usage] : b.84.2.0 |Barrel-sandwich hybrid |Rudiment single hybrid motif |automated matches |automated matches |Human (Homo sapiens) [TaxId: 9606]
d2fv5a_ : (CYS365) (GLY412) [view usage] : d.92.1.10 |Zincin-like |Metalloproteases ("zincins"), catalytic domain |TNF-alpha converting enzyme, TACE, catalytic domain |TNF-alpha converting enzyme, TACE, catalytic domain |Human (Homo sapiens) [TaxId: 9606]
d3pzta_ : (GLN41) (GLY71) [view usage] : c.1.8.0 |TIM beta/alpha-barrel |(Trans)glycosidases |automated matches |automated matches |Bacillus subtilis [TaxId: 224308]
d4kttc2 : (GLN187) (GLU224) [view usage] : d.130.1.1 |S-adenosylmethionine synthetase |S-adenosylmethionine synthetase |S-adenosylmethionine synthetase |S-adenosylmethionine synthetase |Human (Homo sapiens), isoform type-2 [TaxId: 9606]
d4qp0a_ : (PHE4) (VAL40) [view usage] : c.1.8.0 |TIM beta/alpha-barrel |(Trans)glycosidases |automated matches |automated matches |Rhizomucor miehei [TaxId: 4839]
d1nedb_ : (ALA97) (GLU143) [view usage] : d.153.1.4 |Ntn hydrolase-like |N-terminal nucleophile aminohydrolases (Ntn hydrolases) |Proteasome subunits |HslV (ClpQ) protease |Escherichia coli [TaxId: 562]
d1kixa2 : (SER275) (LYS312) [view usage] : b.40.4.3 |OB-fold |Nucleic acid-binding proteins |Single strand DNA-binding domain, SSB |Telomere end binding protein alpha subunit |Oxytricha nova [TaxId: 200597]
d1vkza1 : (GLY348) (VAL387) [view usage] : b.84.2.1 |Barrel-sandwich hybrid |Rudiment single hybrid motif |BC C-terminal domain-like |Glycinamide ribonucleotide synthetase (GAR-syn), C-domain |Thermotoga maritima [TaxId: 2336]
d1nu5a1 : (GLN336) (TYR366) [view usage] : c.1.11.2 |TIM beta/alpha-barrel |Enolase C-terminal domain-like |D-glucarate dehydratase-like |Chlormuconate cycloisomerase |Pseudomonas sp. p51 [TaxId: 65067]
d2viga1 : (GLY221) (LEU254) [view usage] : e.6.1.1 |Acyl-CoA dehydrogenase NM domain-like |Acyl-CoA dehydrogenase NM domain-like |Medium chain acyl-CoA dehydrogenase, NM (N-terminal and middle) domains |automated matches |Human (Homo sapiens) [TaxId: 9606]
d3dr4b_ : (ARG271) (GLY311) [view usage] : c.67.1.0 |PLP-dependent transferase-like |PLP-dependent transferases |automated matches |automated matches |Caulobacter crescentus [TaxId: 190650]
d1g5ba_ : (LEU124) (GLY171) [view usage] : d.159.1.3 |Metallo-dependent phosphatases |Metallo-dependent phosphatases |Protein serine/threonine phosphatase |lambda ser/thr protein phosphatase |Bacteriophage lambda [TaxId: 10710]
d1ecea_ : (TYR5) (GLY57) [view usage] : c.1.8.3 |TIM beta/alpha-barrel |(Trans)glycosidases |beta-glycanases |Endocellulase E1 |Acidothermus cellulolyticus [TaxId: 28049]
d1h0ja_ : (LEU1) (PRO33) [view usage] : g.7.1.1 |Snake toxin-like |Snake toxin-like |Snake venom toxins |Cardiotoxin III |Taiwan cobra (Naja naja atra) [TaxId: 8656]
d3dr4d_ : (ARG271) (GLY311) [view usage] : c.67.1.0 |PLP-dependent transferase-like |PLP-dependent transferases |automated matches |automated matches |Caulobacter crescentus [TaxId: 190650]
d2qdla_ : (GLU102) (GLU146) [view usage] : b.40.7.0 |OB-fold |CheW-like |automated matches |automated matches |Thermoanaerobacter tengcongensis [TaxId: 273068]
d1esia_ : (VAL9) (GLN48) [view usage] : e.3.1.1 |beta-lactamase/transpeptidase-like |beta-lactamase/transpeptidase-like |beta-Lactamase/D-ala carboxypeptidase |D-ala carboxypeptidase/transpeptidase |Streptomyces sp., K15 [TaxId: 1931]
d1wfea_ : (HIS23) (ASP61) [view usage] : g.80.1.1 |AN1-like Zinc finger |AN1-like Zinc finger |AN1-like Zinc finger |AN1-type zinc finger protein 1 |Mouse (Mus musculus) [TaxId: 10090]
d1neda_ : (ALA97) (GLU143) [view usage] : d.153.1.4 |Ntn hydrolase-like |N-terminal nucleophile aminohydrolases (Ntn hydrolases) |Proteasome subunits |HslV (ClpQ) protease |Escherichia coli [TaxId: 562]
d1ms5a1 : (ARG577) (SER623) [view usage] : b.29.1.15 |Concanavalin A-like lectins/glucanases |Concanavalin A-like lectins/glucanases |Trypanosoma sialidase, C-terminal domain |Trypanosoma sialidase, C-terminal domain |Trypanosoma cruzi [TaxId: 5693]
d1ig0a1 : (SER287) (LEU319) [view usage] : b.82.6.1 |Double-stranded beta-helix |Thiamin pyrophosphokinase, substrate-binding domain |Thiamin pyrophosphokinase, substrate-binding domain |Thiamin pyrophosphokinase, substrate-binding domain |Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
d3dj1a_ : (VAL12) (PRO45) [view usage] : b.36.1.0 |PDZ domain-like |PDZ domain-like |automated matches |automated matches |Mouse (Mus musculus) [TaxId: 10090]
d3krzb_ : (MET6) (TYR43) [view usage] : c.1.4.0 |TIM beta/alpha-barrel |FMN-linked oxidoreductases |automated matches |automated matches |Thermoanaerobacter pseudethanolicus [TaxId: 340099]
d4iv6a1 : (THR136) (SER181) [view usage] : e.6.1.0 |Acyl-CoA dehydrogenase NM domain-like |Acyl-CoA dehydrogenase NM domain-like |automated matches |automated matches |Mycobacterium smegmatis [TaxId: 246196]
d2whja_ : (GLY4) (GLY47) [view usage] : c.1.8.0 |TIM beta/alpha-barrel |(Trans)glycosidases |automated matches |automated matches |Bacillus agaradhaerens [TaxId: 76935]
d2qk4a3 : (ALA370) (ILE410) [view usage] : b.84.2.0 |Barrel-sandwich hybrid |Rudiment single hybrid motif |automated matches |automated matches |Human (Homo sapiens) [TaxId: 9606]
d1k8gb2 : (SER275) (LYS312) [view usage] : b.40.4.3 |OB-fold |Nucleic acid-binding proteins |Single strand DNA-binding domain, SSB |Telomere end binding protein alpha subunit |Oxytricha nova [TaxId: 200597]
d2djxa_ : (CYS1) (SER35) [view usage] : c.1.4.1 |TIM beta/alpha-barrel |FMN-linked oxidoreductases |FMN-linked oxidoreductases |automated matches |Trypanosoma cruzi [TaxId: 5693]
d1fhwa_ : (ALA341) (ASP382) [view usage] : b.55.1.1 |PH domain-like barrel |PH domain-like |Pleckstrin-homology domain (PH domain) |Grp1 |Mouse (Mus musculus) [TaxId: 10090]
d3gr7a_ : (SER7) (HIS44) [view usage] : c.1.4.0 |TIM beta/alpha-barrel |FMN-linked oxidoreductases |automated matches |automated matches |Geobacillus kaustophilus [TaxId: 1462]
d2c0ha1 : (ARG18) (PHE49) [view usage] : c.1.8.3 |TIM beta/alpha-barrel |(Trans)glycosidases |beta-glycanases |endo-1,4-beta-mannosidase |Blue mussel (Mytilus edulis) [TaxId: 6550]
d4jpbw_ : (GLN108) (ILE145) [view usage] : b.40.7.1 |OB-fold |CheW-like |CheW-like |automated matches |Thermotoga maritima [TaxId: 243274]
d4e1jb1 : (MSE235) (GLN274) [view usage] : c.55.1.0 |Ribonuclease H-like motif |Actin-like ATPase domain |automated matches |automated matches |Sinorhizobium meliloti [TaxId: 266834]
d1t1ea2 : (GLY126) (ILE156) [view usage] : d.58.3.2 |Ferredoxin-like |Protease propeptides/inhibitors |Subtilase propeptides/inhibitors |Pro-kumamolisin activation domain |Bacillus sp. MN-32 [TaxId: 198803]
List of distinct SCOP folds where this concept is used (in one or more of its domains):
e.3, c.1, b.82, c.67, d.159, d.58, b.29, d.92, b.40, c.55, e.6, d.153, b.84, b.55, d.130, b.36, g.7, g.80