Tableau information
Concept source: d4i2va_ amino acid (a.a.) range (ASN40)(VAL78)
nSSEs in this Concept: 4
String of secondary struct.elems. (SSEs) defining this concept: EEEH
Each SSE's a.a.range: (start resi) (end resi) SSEtype (H=Helix; E=Strand) followed by a numeric SSE ID:
(ASN40) (ALA45) E1
(GLU49) (ALA55) E2
(LYS60) (SER66) E3
(PRO72) (VAL78) H4
Orientation angles° of SSE-pairs; those in contact shown in bold font
E1
E2 162.8° E2
E3 -36.8° 159.8° E3
H4 124.3° -38.5° 158.1°
Footnote: Inferred from this concept's usages (listed below) was the angular variance of 1σ = ±13.0° about each orientation angle shown above.
Loci of concept usages (shown as a range of a.a. residue ids) in SCOP(v2.05) domains, along with their brief legend taken from SCOP
d2rgfa_ : (ASN6) (HIS49) [view usage] : d.15.1.5 |beta-Grasp (ubiquitin-like) |Ubiquitin-like |Ras-binding domain, RBD |Ral guanosine-nucleotide exchange factor, RalGDS |Human (Homo sapiens) [TaxId: 9606]
d1iwoa3 : (GLU482) (CYS525) [view usage] : d.220.1.1 |Metal cation-transporting ATPase, ATP-binding domain N |Metal cation-transporting ATPase, ATP-binding domain N |Metal cation-transporting ATPase, ATP-binding domain N |Calcium ATPase |Rabbit (Oryctolagus cuniculus) [TaxId: 9986]
d1izza_ : (GLY239) (TYR281) [view usage] : c.23.16.2 |Flavodoxin-like |Class I glutamine amidotransferase-like |DJ-1/PfpI |HSP31 (HchA; YedU) |Escherichia coli [TaxId: 562]
d3zeua2 : (ARG110) (VAL143) [view usage] : c.55.1.0 |Ribonuclease H-like motif |Actin-like ATPase domain |automated matches |automated matches |Salmonella enterica [TaxId: 909946]
d3auba_ : (LYS15) (ALA56) [view usage] : g.8.1.1 |BPTI-like |BPTI-like |Small Kunitz-type inhibitors & BPTI-like toxins |automated matches |Cow (Bos taurus) [TaxId: 9913]
d1m3ea2 : (ASN428) (SER462) [view usage] : c.124.1.3 |NagB/RpiA/CoA transferase-like |NagB/RpiA/CoA transferase-like |CoA transferase beta subunit-like |Succinate:CoA transferase, C-terminal domain |Pig (Sus scrofa) [TaxId: 9823]
d2lfka_ : (LYS39) (ASN72) [view usage] : g.8.1.3 |BPTI-like |BPTI-like |Tick tryptase inhibitor-like |automated matches |Brown ear tick (Rhipicephalus appendiculatus) [TaxId: 34631]
d1xmda1 : (VAL304) (THR349) [view usage] : c.43.1.3 |CoA-dependent acyltransferases |CoA-dependent acyltransferases |Choline/Carnitine O-acyltransferase |Peroxisomal carnitine O-octanoyltransferase, COT |Mouse (Mus musculus) [TaxId: 10090]
d1t70a_ : (PRO83) (ASP138) [view usage] : d.159.1.9 |Metallo-dependent phosphatases |Metallo-dependent phosphatases |DR1281-like |Putative phosphatase DR1281 |Deinococcus radiodurans [TaxId: 1299]
d3jw0d_ : (PHE905) (VAL945) [view usage] : d.148.1.0 |Hect, E3 ligase catalytic domain |Hect, E3 ligase catalytic domain |automated matches |automated matches |Human (Homo sapiens) [TaxId: 9606]
d1hxna_ : (PRO387) (ALA416) [view usage] : b.66.1.1 |4-bladed beta-propeller |Hemopexin-like domain |Hemopexin-like domain |Hemopexin |Rabbit (Oryctolagus cuniculus) [TaxId: 9986]
d2lb6a_ : (PHE106) (GLY161) [view usage] : b.60.1.1 |Lipocalins |Lipocalins |Retinol binding protein-like |automated matches |Mouse (Mus musculus) [TaxId: 10090]
d2h3wa2 : (ASP561) (PRO622) [view usage] : c.43.1.3 |CoA-dependent acyltransferases |CoA-dependent acyltransferases |Choline/Carnitine O-acyltransferase |Carnitine acetyltransferase |Mouse (Mus musculus) [TaxId: 10090]
d1byna_ : (ASP178) (LYS222) [view usage] : b.7.1.2 |C2 domain-like |C2 domain (Calcium/lipid-binding domain, CaLB) |Synaptotagmin-like (S variant) |Synaptogamin I |Norway rat (Rattus norvegicus) [TaxId: 10116]
d2puyb_ : (HIS484) (ILE543) [view usage] : g.50.1.0 |FYVE/PHD zinc finger |FYVE/PHD zinc finger |automated matches |automated matches |Human (Homo sapiens) [TaxId: 9606]
d4i4za_ : (MET1) (ASP52) [view usage] : c.14.1.0 |ClpP/crotonase |ClpP/crotonase |automated matches |automated matches |Synechocystis sp. [TaxId: 1111708]
d1wxwb2 : (GLY93) (ALA136) [view usage] : c.66.1.51 |S-adenosyl-L-methionine-dependent methyltransferases |S-adenosyl-L-methionine-dependent methyltransferases |hypothetical RNA methyltransferase |Hypothetical protein TTHA1280, middle and C-terminal domains |Thermus thermophilus [TaxId: 274]
d1o9la2 : (ASN467) (SER501) [view usage] : c.124.1.3 |NagB/RpiA/CoA transferase-like |NagB/RpiA/CoA transferase-like |CoA transferase beta subunit-like |Succinate:CoA transferase, C-terminal domain |Pig (Sus scrofa) [TaxId: 9823]
d2lf2a_ : (PHE92) (LYS166) [view usage] : d.129.3.0 |TBP-like |Bet v1-like |automated matches |automated matches |Cytophaga hutchinsonii [TaxId: 269798]
d2avfd1 : (PRO71) (GLN113) [view usage] : b.6.1.0 |Cupredoxin-like |Cupredoxins |automated matches |automated matches |Achromobacter cycloclastes [TaxId: 223]
d2qqdf_ : (TYR77) (GLY135) [view usage] : d.155.1.2 |Pyruvoyl-dependent histidine and arginine decarboxylases |Pyruvoyl-dependent histidine and arginine decarboxylases |Arginine decarboxylase |automated matches |Methanocaldococcus jannaschii [TaxId: 2190]
d1j7na2 : (GLU651) (ASP701) [view usage] : d.92.1.14 |Zincin-like |Metalloproteases ("zincins"), catalytic domain |Anthrax toxin lethal factor, N- and C-terminal domains |Anthrax toxin lethal factor, N- and C-terminal domains |Anthrax bacillus (Bacillus anthracis) [TaxId: 1392]
d1ub1a_ : (THR106) (LYS145) [view usage] : d.10.1.3 |DNA-binding domain |DNA-binding domain |Methyl-CpG-binding domain, MBD |Methyl-CpG-binding protein 2, MECP2 |Chicken (Gallus gallus) [TaxId: 9031]
d1t8fa_ : (ALA16) (ALA49) [view usage] : d.2.1.3 |Lysozyme-like |Lysozyme-like |Phage lysozyme |Phage T4 lysozyme |Bacteriophage T4 [TaxId: 10665]
d2e4ja_ : (SER114) (GLY171) [view usage] : b.60.1.0 |Lipocalins |Lipocalins |automated matches |automated matches |Mouse (Mus musculus) [TaxId: 10090]
d1pyya4 : (ALA545) (PHE603) [view usage] : e.3.1.1 |beta-lactamase/transpeptidase-like |beta-lactamase/transpeptidase-like |beta-Lactamase/D-ala carboxypeptidase |Penicillin-binding protein 2x (pbp-2x), transpeptidase domain |Pneumococcus (Streptococcus pneumoniae) [TaxId: 1313]
d3ijta_ : (CYS70) (ALA122) [view usage] : d.129.3.9 |TBP-like |Bet v1-like |Smu440-like |Hypothetical protein SMU440 |Streptococcus mutans [TaxId: 1309]
d2qqdc_ : (TYR77) (GLY135) [view usage] : d.155.1.2 |Pyruvoyl-dependent histidine and arginine decarboxylases |Pyruvoyl-dependent histidine and arginine decarboxylases |Arginine decarboxylase |automated matches |Methanocaldococcus jannaschii [TaxId: 2190]
d1j7nb2 : (GLU651) (LEU700) [view usage] : d.92.1.14 |Zincin-like |Metalloproteases ("zincins"), catalytic domain |Anthrax toxin lethal factor, N- and C-terminal domains |Anthrax toxin lethal factor, N- and C-terminal domains |Anthrax bacillus (Bacillus anthracis) [TaxId: 1392]
d2qlua_ : (LEU190) (THR236) [view usage] : d.144.1.0 |Protein kinase-like (PK-like) |Protein kinase-like (PK-like) |automated matches |automated matches |Human (Homo sapiens) [TaxId: 9606]
d1mo7a_ : (ILE477) (ASP516) [view usage] : d.220.1.1 |Metal cation-transporting ATPase, ATP-binding domain N |Metal cation-transporting ATPase, ATP-binding domain N |Metal cation-transporting ATPase, ATP-binding domain N |Sodium/potassium-transporting ATPase alpha chain |Norway rat (Rattus norvegicus) [TaxId: 10116]
d2jima2 : (GLU6) (SER59) [view usage] : c.81.1.1 |Formate dehydrogenase/DMSO reductase, domains 1-3 |Formate dehydrogenase/DMSO reductase, domains 1-3 |Formate dehydrogenase/DMSO reductase, domains 1-3 |Periplasmic nitrate reductase alpha chain |Desulfovibrio desulfuricans [TaxId: 876]
d4b2oa_ : (ASN84) (LYS140) [view usage] : d.159.1.0 |Metallo-dependent phosphatases |Metallo-dependent phosphatases |automated matches |automated matches |Bacillus subtilis [TaxId: 224308]
d2bc4a1 : (GLY32) (GLU65) [view usage] : d.19.1.1 |MHC antigen-recognition domain |MHC antigen-recognition domain |MHC antigen-recognition domain |automated matches |Human (Homo sapiens) [TaxId: 9606]
d1ckjb_ : (ARG11) (GLN63) [view usage] : d.144.1.7 |Protein kinase-like (PK-like) |Protein kinase-like (PK-like) |Protein kinases, catalytic subunit |Casein kinase-1, CK1 |Norway rat (Rattus norvegicus) [TaxId: 10116]
d4qyxa_ : (ALA196) (LYS236) [view usage] : c.23.16.2 |Flavodoxin-like |Class I glutamine amidotransferase-like |DJ-1/PfpI |automated matches |Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
d1xmca1 : (VAL304) (THR349) [view usage] : c.43.1.3 |CoA-dependent acyltransferases |CoA-dependent acyltransferases |Choline/Carnitine O-acyltransferase |Peroxisomal carnitine O-octanoyltransferase, COT |Mouse (Mus musculus) [TaxId: 10090]
d1exsa_ : (ALA80) (LEU117) [view usage] : b.60.1.1 |Lipocalins |Lipocalins |Retinol binding protein-like |beta-Lactoglobulin |Pig (Sus scrofa) [TaxId: 9823]
d4lrua_ : (ALA194) (PHE233) [view usage] : c.23.16.2 |Flavodoxin-like |Class I glutamine amidotransferase-like |DJ-1/PfpI |automated matches |Candida albicans [TaxId: 237561]
d1ca0d_ : (ARG15) (VAL54) [view usage] : g.8.1.1 |BPTI-like |BPTI-like |Small Kunitz-type inhibitors & BPTI-like toxins |Alzheimer's amyloid B-protein precursor, APPI |Human (Homo sapiens) [TaxId: 9606]
d3mbta_ : (GLY96) (GLY145) [view usage] : b.60.1.0 |Lipocalins |Lipocalins |automated matches |automated matches |Escherichia coli K-12 [TaxId: 83333]
d3c60a1 : (ASN53) (VAL86) [view usage] : b.1.1.0 |Immunoglobulin-like beta-sandwich |Immunoglobulin |automated matches |automated matches |Mouse (Mus musculus) [TaxId: 10090]
d2puya_ : (MET485) (GLU541) [view usage] : g.50.1.0 |FYVE/PHD zinc finger |FYVE/PHD zinc finger |automated matches |automated matches |Human (Homo sapiens) [TaxId: 9606]
d3d1ja_ : (ASP53) (ASP89) [view usage] : c.87.1.0 |UDP-Glycosyltransferase/glycogen phosphorylase |UDP-Glycosyltransferase/glycogen phosphorylase |automated matches |automated matches |Escherichia coli [TaxId: 562]
d1t17a_ : (SER78) (LEU145) [view usage] : d.129.3.6 |TBP-like |Bet v1-like |oligoketide cyclase/dehydrase-like |Hypothetical protein CC1736 |Caulobacter crescentus [TaxId: 155892]
d4ilea_ : (PHE45) (TYR85) [view usage] : c.37.1.0 |P-loop containing nucleoside triphosphate hydrolases |P-loop containing nucleoside triphosphate hydrolases |automated matches |automated matches |Human (Homo sapiens) [TaxId: 9606]
d3l33e_ : (ARG15) (VAL54) [view usage] : g.8.1.1 |BPTI-like |BPTI-like |Small Kunitz-type inhibitors & BPTI-like toxins |automated matches |Human (Homo sapiens) [TaxId: 9606]
d3copa_ : (ASP53) (ASP89) [view usage] : c.87.1.0 |UDP-Glycosyltransferase/glycogen phosphorylase |UDP-Glycosyltransferase/glycogen phosphorylase |automated matches |automated matches |Escherichia coli [TaxId: 562]
d1aa6a2 : (MET1) (ASN53) [view usage] : c.81.1.1 |Formate dehydrogenase/DMSO reductase, domains 1-3 |Formate dehydrogenase/DMSO reductase, domains 1-3 |Formate dehydrogenase/DMSO reductase, domains 1-3 |Formate dehydrogenase H |Escherichia coli [TaxId: 562]
d2h0pa_ : (SER75) (LYS112) [view usage] : b.1.18.0 |Immunoglobulin-like beta-sandwich |E set domains |automated matches |automated matches |Dengue virus 4 [TaxId: 11070]
d1tp9d_ : (GLY113) (LEU159) [view usage] : c.47.1.0 |Thioredoxin fold |Thioredoxin-like |automated matches |automated matches |Western balsam poplar (Populus trichocarpa) [TaxId: 3694]
d2bc4c1 : (GLY32) (GLU65) [view usage] : d.19.1.1 |MHC antigen-recognition domain |MHC antigen-recognition domain |MHC antigen-recognition domain |automated matches |Human (Homo sapiens) [TaxId: 9606]
d1obga_ : (LEU12) (LEU68) [view usage] : d.143.1.1 |SAICAR synthase-like |SAICAR synthase-like |SAICAR synthase |SAICAR synthase |Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
d4ezml_ : (CYS160) (GLU195) [view usage] : d.169.1.1 |C-type lectin-like |C-type lectin-like |C-type lectin domain |Low affinity immunoglobulin epsilon Fc receptor |Human (Homo sapiens) [TaxId: 9606]
d1kmda_ : (LEU13) (GLY57) [view usage] : d.189.1.1 |PX domain |PX domain |PX domain |Vam7p |Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
d1tu4a_ : (PHE48) (ARG91) [view usage] : c.37.1.8 |P-loop containing nucleoside triphosphate hydrolases |P-loop containing nucleoside triphosphate hydrolases |G proteins |Rab5a |Human (Homo sapiens) [TaxId: 9606]
d1fika_ : (THR89) (GLN138) [view usage] : d.110.1.1 |Profilin-like |Profilin (actin-binding protein) |Profilin (actin-binding protein) |Profilin (actin-binding protein) |Human (Homo sapiens), isoform I [TaxId: 9606]
d4orra_ : (SER114) (GLY171) [view usage] : b.60.1.0 |Lipocalins |Lipocalins |automated matches |automated matches |Human (Homo sapiens) [TaxId: 9606]
d1tp9a1 : (GLY113) (LEU162) [view usage] : c.47.1.10 |Thioredoxin fold |Thioredoxin-like |Glutathione peroxidase-like |Plant peroxiredoxin |Western balsam poplar (Populus trichocarpa) [TaxId: 3694]
d2q6dc_ : (VAL154) (ARG191) [view usage] : b.47.1.0 |Trypsin-like serine proteases |Trypsin-like serine proteases |automated matches |automated matches |Infectious bronchitis virus [TaxId: 11120]
List of distinct SCOP folds where this concept is used (in one or more of its domains):
e.3, c.81, d.159, b.47, c.56, c.66, d.92, c.124, c.14, d.129, c.23, d.144, c.37, c.47, c.55, d.2, b.60, d.169, c.87, b.6,
b.1, d.110, c.43, d.143, d.19, d.155, d.15, b.7, d.148, b.66, g.8, d.189, d.220, g.50, d.10