Tableau information
Concept source: d1skoa_ amino acid (a.a.) range (SER67)(ARG119)
nSSEs in this Concept: 4
String of secondary struct.elems. (SSEs) defining this concept: EEEH
Each SSE's a.a.range: (start resi) (end resi) SSEtype (H=Helix; E=Strand) followed by a numeric SSE ID:
(SER67) (ASN77) E1
(TYR79) (ASN85) E2
(PRO88) (ILE94) E3
(THR101) (ARG119) H4
Orientation angles° of SSE-pairs; those in contact shown in bold font
E1
E2 168.6° E2
E3 -27.5° 160.9° E3
H4 125.1° -43.6° 143.4°
Footnote: Inferred from this concept's usages (listed below) was the angular variance of 1σ = ±7.8° about each orientation angle shown above.
Loci of concept usages (shown as a range of a.a. residue ids) in SCOP(v2.05) domains, along with their brief legend taken from SCOP
d2cqla1 : (GLY32) (GLY87) [view usage] : d.141.1.1 |Ribosomal protein L6 |Ribosomal protein L6 |Ribosomal protein L6 |Ribosomal protein L6 |Human (Homo sapiens) [TaxId: 9606]
d2aa4a1 : (MET1) (VAL49) [view usage] : c.55.1.10 |Ribonuclease H-like motif |Actin-like ATPase domain |ROK |N-acetylmannosamine kinase NanK |Escherichia coli [TaxId: 562]
d1g9xa_ : (ILE7) (GLY55) [view usage] : c.37.1.12 |P-loop containing nucleoside triphosphate hydrolases |P-loop containing nucleoside triphosphate hydrolases |ABC transporter ATPase domain-like |MJ1267 |Methanococcus jannaschii [TaxId: 2190]
d1sqha_ : (LEU64) (LEU110) [view usage] : d.108.1.5 |Acyl-CoA N-acyltransferases (Nat) |Acyl-CoA N-acyltransferases (Nat) |Hypothetical protein cg14615-pa |Hypothetical protein cg14615-pa |Fruit fly (Drosophila melanogaster) [TaxId: 7227]
d1l4sa_ : (ASN35) (GLN88) [view usage] : d.204.1.1 |Ribosome binding protein Y (YfiA homologue) |Ribosome binding protein Y (YfiA homologue) |Ribosome binding protein Y (YfiA homologue) |Ribosome binding protein Y (YfiA homologue) |Escherichia coli [TaxId: 562]
d1e18a2 : (LEU3) (ASP47) [view usage] : c.81.1.1 |Formate dehydrogenase/DMSO reductase, domains 1-3 |Formate dehydrogenase/DMSO reductase, domains 1-3 |Formate dehydrogenase/DMSO reductase, domains 1-3 |Dimethylsulfoxide reductase (DMSO reductase) |Rhodobacter capsulatus [TaxId: 1061]
d1qynd_ : (GLU39) (LEU98) [view usage] : d.33.1.1 |SecB-like |SecB-like |Bacterial protein-export protein SecB |Bacterial protein-export protein SecB |Escherichia coli [TaxId: 562]
d4mx4a_ : (TRP222) (VAL281) [view usage] : e.3.1.0 |beta-lactamase/transpeptidase-like |beta-lactamase/transpeptidase-like |automated matches |automated matches |Pseudomonas aeruginosa [TaxId: 287]
d1jfic2 : (LEU491) (PHE535) [view usage] : d.129.1.1 |TBP-like |TATA-box binding protein-like |TATA-box binding protein (TBP), C-terminal domain |TATA-box binding protein (TBP), C-terminal domain |Human (Homo sapiens) [TaxId: 9606]
d1sz2a2 : (LYS3) (HIS52) [view usage] : c.55.1.7 |Ribonuclease H-like motif |Actin-like ATPase domain |Glucokinase |Glucokinase Glk |Escherichia coli [TaxId: 562]
d2dsyc_ : (ALA18) (GLY68) [view usage] : d.304.1.2 |TTHA1013/TTHA0281-like |TTHA1013/TTHA0281-like |TTHA0281-like |automated matches |Thermus thermophilus [TaxId: 274]
d4tyua_ : (GLY35) (SER72) [view usage] : b.1.1.1 |Immunoglobulin-like beta-sandwich |Immunoglobulin |V set domains (antibody variable domain-like) |automated matches |Llama (Lama glama) [TaxId: 9844]
d1qync_ : (GLU39) (LEU98) [view usage] : d.33.1.1 |SecB-like |SecB-like |Bacterial protein-export protein SecB |Bacterial protein-export protein SecB |Escherichia coli [TaxId: 562]
d1wiia_ : (SER34) (SER80) [view usage] : g.41.3.4 |Rubredoxin-like |Zinc beta-ribbon |Putative zinc binding domain |Hypothetical UPF0222 protein MGC4549 |Mouse (Mus musculus) [TaxId: 10090]
d3k92a1 : (GLN46) (ASN109) [view usage] : c.58.1.0 |Aminoacid dehydrogenase-like, N-terminal domain |Aminoacid dehydrogenase-like, N-terminal domain |automated matches |automated matches |Bacillus subtilis [TaxId: 1423]
d1j3wa_ : (GLN83) (ALA138) [view usage] : d.110.7.1 |Profilin-like |Roadblock/LC7 domain |Roadblock/LC7 domain |Giding protein MglB |Thermus thermophilus [TaxId: 274]
d3vx4a_ : (ILE528) (ASN576) [view usage] : c.37.1.0 |P-loop containing nucleoside triphosphate hydrolases |P-loop containing nucleoside triphosphate hydrolases |automated matches |automated matches |Streptococcus mutans [TaxId: 210007]
d4w68a_ : (GLY35) (SER72) [view usage] : b.1.1.1 |Immunoglobulin-like beta-sandwich |Immunoglobulin |V set domains (antibody variable domain-like) |automated matches |Llama (Lama glama) [TaxId: 9844]
d2b8ea2 : (LYS484) (GLY510) [view usage] : d.220.1.1 |Metal cation-transporting ATPase, ATP-binding domain N |Metal cation-transporting ATPase, ATP-binding domain N |Metal cation-transporting ATPase, ATP-binding domain N |Cation-transporting ATPase |Archaeoglobus fulgidus [TaxId: 2234]
d1djba_ : (ASP228) (PHE290) [view usage] : e.3.1.1 |beta-lactamase/transpeptidase-like |beta-lactamase/transpeptidase-like |beta-Lactamase/D-ala carboxypeptidase |beta-Lactamase, class A |Staphylococcus aureus [TaxId: 1280]
d4jlya_ : (ALA54) (ASP108) [view usage] : d.108.1.0 |Acyl-CoA N-acyltransferases (Nat) |Acyl-CoA N-acyltransferases (Nat) |automated matches |automated matches |Vibrio cholerae [TaxId: 666]
d2tmga2 : (LYS34) (THR90) [view usage] : c.58.1.1 |Aminoacid dehydrogenase-like, N-terminal domain |Aminoacid dehydrogenase-like, N-terminal domain |Aminoacid dehydrogenases |Glutamate dehydrogenase |Thermotoga maritima [TaxId: 2336]
d1cdwa2 : (PRO285) (GLY330) [view usage] : d.129.1.1 |TBP-like |TATA-box binding protein-like |TATA-box binding protein (TBP), C-terminal domain |TATA-box binding protein (TBP), C-terminal domain |Human (Homo sapiens) [TaxId: 9606]
d1zxob1 : (LEU3) (LEU53) [view usage] : c.55.1.5 |Ribonuclease H-like motif |Actin-like ATPase domain |BadF/BadG/BcrA/BcrD-like |Hypothetical protein BT3618 |Bacteroides thetaiotaomicron [TaxId: 818]
d2dsyb_ : (ARG17) (GLY68) [view usage] : d.304.1.2 |TTHA1013/TTHA0281-like |TTHA1013/TTHA0281-like |TTHA0281-like |automated matches |Thermus thermophilus [TaxId: 274]
d2haga1 : (ASN229) (VAL275) [view usage] : d.58.4.14 |Ferredoxin-like |Dimeric alpha+beta barrel |Dyp-type peroxidase-like |Melanin biosynthesis protein TyrA |Shewanella oneidensis [TaxId: 70863]
d1gtma2 : (GLN34) (THR90) [view usage] : c.58.1.1 |Aminoacid dehydrogenase-like, N-terminal domain |Aminoacid dehydrogenase-like, N-terminal domain |Aminoacid dehydrogenases |Glutamate dehydrogenase |Pyrococcus furiosus [TaxId: 2261]
d1t1ua2 : (VAL546) (SER616) [view usage] : c.43.1.3 |CoA-dependent acyltransferases |CoA-dependent acyltransferases |Choline/Carnitine O-acyltransferase |Choline O-acetyltransferase |Norway rat (Rattus norvegicus) [TaxId: 10116]
d1pcza1 : (PRO44) (GLY91) [view usage] : d.129.1.1 |TBP-like |TATA-box binding protein-like |TATA-box binding protein (TBP), C-terminal domain |TATA-box binding protein (TBP), C-terminal domain |Pyrococcus woesei [TaxId: 2262]
d3a3ja1 : (ASN226) (ASN281) [view usage] : e.3.1.0 |beta-lactamase/transpeptidase-like |beta-lactamase/transpeptidase-like |automated matches |automated matches |Haemophilus influenzae [TaxId: 727]
d4hwxa_ : (ALA7) (ALA51) [view usage] : d.84.1.0 |Subtilisin inhibitor |Subtilisin inhibitor |automated matches |automated matches |Streptomyces caespitosus [TaxId: 53502]
d1l7vc_ : (VAL4) (GLY48) [view usage] : c.37.1.12 |P-loop containing nucleoside triphosphate hydrolases |P-loop containing nucleoside triphosphate hydrolases |ABC transporter ATPase domain-like |ABC transporter involved in vitamin B12 uptake, BtuD |Escherichia coli [TaxId: 562]
d1wpna_ : (ASN69) (ASN131) [view usage] : c.107.1.1 |DHH phosphoesterases |DHH phosphoesterases |Manganese-dependent inorganic pyrophosphatase (family II) |Manganese-dependent inorganic pyrophosphatase (family II) |Bacillus subtilis [TaxId: 1423]
d1maba3 : (ARG143) (ASN185) [view usage] : c.37.1.11 |P-loop containing nucleoside triphosphate hydrolases |P-loop containing nucleoside triphosphate hydrolases |RecA protein-like (ATPase-domain) |Central domain of alpha subunit of F1 ATP synthase |Norway rat (Rattus norvegicus) [TaxId: 10116]
d1j6ua3 : (THR230) (GLY281) [view usage] : c.72.2.1 |Ribokinase-like |MurD-like peptide ligases, catalytic domain |MurCDEF |UDP-N-acetylmuramate-alanine ligase MurC |Thermotoga maritima [TaxId: 2336]
d2gtda1 : (MET4) (GLY51) [view usage] : c.55.1.13 |Ribonuclease H-like motif |Actin-like ATPase domain |CoaX-like |Type III pantothenate kinase, CoaX |Thermotoga maritima [TaxId: 2336]
d1eqne_ : (VAL204) (GLN244) [view usage] : e.13.1.1 |DNA primase core |DNA primase core |DNA primase DnaG catalytic core |DNA primase DnaG catalytic core |Escherichia coli [TaxId: 562]
d4hx3f_ : (ALA7) (THR52) [view usage] : d.84.1.0 |Subtilisin inhibitor |Subtilisin inhibitor |automated matches |automated matches |Streptomyces caespitosus [TaxId: 53502]
d1diza2 : (TYR34) (PHE82) [view usage] : d.129.1.2 |TBP-like |TATA-box binding protein-like |DNA repair glycosylase, N-terminal domain |3-Methyladenine DNA glycosylase II (gene alkA or aidA) |Escherichia coli [TaxId: 562]
d1qyna_ : (GLU39) (LEU98) [view usage] : d.33.1.1 |SecB-like |SecB-like |Bacterial protein-export protein SecB |Bacterial protein-export protein SecB |Escherichia coli [TaxId: 562]
d2onka1 : (PHE2) (GLY46) [view usage] : c.37.1.12 |P-loop containing nucleoside triphosphate hydrolases |P-loop containing nucleoside triphosphate hydrolases |ABC transporter ATPase domain-like |Molybdate/tungstate import ATP-binding protein WtpC (ModC) |Archaeoglobus fulgidus [TaxId: 2234]
d1xm8a_ : (MET1) (GLY44) [view usage] : d.157.1.2 |Metallo-hydrolase/oxidoreductase |Metallo-hydrolase/oxidoreductase |Glyoxalase II (hydroxyacylglutathione hydrolase) |Glyoxalase II (hydroxyacylglutathione hydrolase) |Thale cress (Arabidopsis thaliana) [TaxId: 3702]
d1v5sa_ : (PHE63) (LYS119) [view usage] : d.129.6.1 |TBP-like |KA1-like |Kinase associated domain 1, KA1 |Map/microtubule affinity-regulating kinase 3 |Mouse (Mus musculus) [TaxId: 10090]
d1euza2 : (MET35) (THR91) [view usage] : c.58.1.1 |Aminoacid dehydrogenase-like, N-terminal domain |Aminoacid dehydrogenase-like, N-terminal domain |Aminoacid dehydrogenases |Glutamate dehydrogenase |Thermococcus profundus [TaxId: 49899]
d3vefa_ : (THR231) (GLY281) [view usage] : d.58.4.0 |Ferredoxin-like |Dimeric alpha+beta barrel |automated matches |automated matches |Rhodococcus jostii [TaxId: 101510]
d1di2a_ : (ALA134) (THR180) [view usage] : d.50.1.1 |dsRBD-like |dsRNA-binding domain-like |Double-stranded RNA-binding domain (dsRBD) |Double-stranded RNA-binding protein A, second dsRBD |African clawed frog (Xenopus laevis) [TaxId: 8355]
d1v7va2 : (THR63) (ALA90) [view usage] : b.30.5.3 |Supersandwich |Galactose mutarotase-like |Glycosyltransferase family 36 N-terminal domain |Chitobiose phosphorylase ChbP |Vibrio proteolyticus [TaxId: 671]
d1wwna_ : (THR33) (ILE68) [view usage] : g.3.7.1 |Knottins (small inhibitors, toxins, lectins) |Scorpion toxin-like |Long-chain scorpion toxins |automated matches |Mesobuthus martensii [TaxId: 34649]
d1vw45_ : (VAL324) (TYR371) [view usage] : i.1.1.2 |Ribosome and ribosomal fragments |Ribosome and ribosomal fragments |Large subunit |Eukaryotic, mitochondrial (54S or 39S subunit) |Saccharomyces cerevisiae [TaxId: 4932]
d2yhxa_ : (PHE64) (GLU123) [view usage] : i.12.1.1 |Proteins of incorrect, partial and unknown sequence |Proteins of incorrect, partial and unknown sequence |Proteins of incorrect, partial and unknown sequence |Hexokinase |Baker's yeast (Saccharomyces cerevisiae), BIII [TaxId: 4932]
d2fgga1 : (LYS9) (THR84) [view usage] : d.50.5.1 |dsRBD-like |Rv2632c-like |Rv2632c-like |Hypothetical protein Rv2632c/MT2708 |Mycobacterium tuberculosis [TaxId: 1773]
d1j3wc_ : (GLN83) (ALA138) [view usage] : d.110.7.1 |Profilin-like |Roadblock/LC7 domain |Roadblock/LC7 domain |Giding protein MglB |Thermus thermophilus [TaxId: 274]
d3a2fa2 : (LYS585) (LEU628) [view usage] : e.8.1.0 |DNA/RNA polymerases |DNA/RNA polymerases |automated matches |automated matches |Pyrococcus furiosus [TaxId: 2261]
d1voqa_ : (ASN35) (GLN88) [view usage] : i.1.1.1 |Ribosome and ribosomal fragments |Ribosome and ribosomal fragments |Ribosome complexes |70S ribosome functional complex |Escherichia coli [TaxId: 562]
d1nrfa_ : (LYS539) (GLY594) [view usage] : e.3.1.1 |beta-lactamase/transpeptidase-like |beta-lactamase/transpeptidase-like |beta-Lactamase/D-ala carboxypeptidase |Penicillin receptor BlaR, C-terminal domain |Bacillus licheniformis [TaxId: 1402]
d3vefb_ : (THR231) (GLY281) [view usage] : d.58.4.0 |Ferredoxin-like |Dimeric alpha+beta barrel |automated matches |automated matches |Rhodococcus jostii [TaxId: 101510]
d4fcca1 : (GLU58) (LEU109) [view usage] : c.58.1.0 |Aminoacid dehydrogenase-like, N-terminal domain |Aminoacid dehydrogenase-like, N-terminal domain |automated matches |automated matches |Escherichia coli [TaxId: 83334]
d4u05a_ : (GLY35) (SER72) [view usage] : b.1.1.1 |Immunoglobulin-like beta-sandwich |Immunoglobulin |V set domains (antibody variable domain-like) |automated matches |Llama (Lama glama) [TaxId: 9844]
List of distinct SCOP folds where this concept is used (in one or more of its domains):
e.8, e.3, c.81, d.58, i.1, b.30, d.157, d.129, c.72, c.37, c.55, c.107, b.1, d.108, d.110, c.43, e.13, i.12, c.58, d.33,
d.50, g.41, g.3, d.204, d.304, d.220, d.84, d.141