Tableau information
Concept source: d2k01a_ amino acid (a.a.) range (HIS25)(LEU66)
nSSEs in this Concept: 4
String of secondary struct.elems. (SSEs) defining this concept: EEEH
Each SSE's a.a.range: (start resi) (end resi) SSEtype (H=Helix; E=Strand) followed by a numeric SSE ID:
(HIS25) (THR31) E1
(CYS36) (LEU42) E2
(ARG47) (ASP52) E3
(LYS56) (LEU66) H4
Orientation angles° of SSE-pairs; those in contact shown in bold font
E1
E2 152.1° E2
E3 -54.2° 151.5° E3
H4 -90.7° 100.5° -84.8°
Footnote: Inferred from this concept's usages (listed below) was the angular variance of 1σ = ±12.7° about each orientation angle shown above.
Loci of concept usages (shown as a range of a.a. residue ids) in SCOP(v2.05) domains, along with their brief legend taken from SCOP
d3e66a1 : (VAL1857) (GLN1902) [view usage] : c.55.3.14 |Ribonuclease H-like motif |Ribonuclease H-like |Prp8 beta-finger domain-like |Pre-mRNA-splicing factor 8, Prp8 |Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
d3hp3a_ : (LEU26) (GLU63) [view usage] : d.9.1.1 |IL8-like |Interleukin 8-like chemokines |Interleukin 8-like chemokines |Stromal cell-derived factor-1 (SDF-1) |Human (Homo sapiens) [TaxId: 9606]
d1u74c_ : (GLU209) (ASP241) [view usage] : a.93.1.1 |Heme-dependent peroxidases |Heme-dependent peroxidases |CCP-like |Cytochrome c peroxidase, CCP |Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
d4g9ja_ : (TRP206) (HIS239) [view usage] : d.159.1.3 |Metallo-dependent phosphatases |Metallo-dependent phosphatases |Protein serine/threonine phosphatase |automated matches |Human (Homo sapiens) [TaxId: 9606]
d1d5mc2 : (LYS128) (LYS173) [view usage] : d.15.6.1 |beta-Grasp (ubiquitin-like) |Superantigen toxins, C-terminal domain |Superantigen toxins, C-terminal domain |Staphylococcal enterotoxin B, SEB |Staphylococcus aureus [TaxId: 1280]
d1vaza_ : (GLY7) (GLY46) [view usage] : d.245.1.1 |NSFL1 (p97 ATPase) cofactor p47, SEP domain |NSFL1 (p97 ATPase) cofactor p47, SEP domain |NSFL1 (p97 ATPase) cofactor p47, SEP domain |NSFL1 (p97 ATPase) cofactor p47, SEP domain |Norway rat (Rattus norvegicus) [TaxId: 10116]
d3e9oa1 : (VAL1857) (GLN1902) [view usage] : c.55.3.14 |Ribonuclease H-like motif |Ribonuclease H-like |Prp8 beta-finger domain-like |Pre-mRNA-splicing factor 8, Prp8 |Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
d1xdoa4 : (ASP593) (ASP647) [view usage] : d.136.1.4 |Phospholipase D/nuclease |Phospholipase D/nuclease |Polyphosphate kinase C-terminal domain |Polyphosphate kinase, PPK |Escherichia coli [TaxId: 562]
d1v1oa2 : (SER112) (GLY160) [view usage] : d.15.6.1 |beta-Grasp (ubiquitin-like) |Superantigen toxins, C-terminal domain |Superantigen toxins, C-terminal domain |Exotoxin 1 (SET1, Superantigen-like protein 7) |Staphylococcus aureus [TaxId: 1280]
d1tfoa_ : (SER655) (GLU693) [view usage] : d.243.1.1 |Colicin D/E5 nuclease domain |Colicin D/E5 nuclease domain |Colicin D nuclease domain |Colicin D nuclease domain |Escherichia coli [TaxId: 562]
d3shda_ : (PHE2) (GLU55) [view usage] : d.113.1.0 |Nudix |Nudix |automated matches |automated matches |Escherichia coli [TaxId: 405955]
d3hp3e_ : (LYS24) (GLU63) [view usage] : d.9.1.1 |IL8-like |Interleukin 8-like chemokines |Interleukin 8-like chemokines |Stromal cell-derived factor-1 (SDF-1) |Human (Homo sapiens) [TaxId: 9606]
d1d5xc2 : (LYS128) (LYS173) [view usage] : d.15.6.1 |beta-Grasp (ubiquitin-like) |Superantigen toxins, C-terminal domain |Superantigen toxins, C-terminal domain |Staphylococcal enterotoxin B, SEB |Staphylococcus aureus [TaxId: 1280]
d1ilr2_ : (ALA55) (ALA99) [view usage] : b.42.1.2 |beta-Trefoil |Cytokine |Interleukin-1 (IL-1) |Interleukin-1 receptor antagonist protein |Human (Homo sapiens) [TaxId: 9606]
d1e8ma1 : (VAL9) (PRO34) [view usage] : b.69.7.1 |7-bladed beta-propeller |Peptidase/esterase 'gauge' domain |Prolyl oligopeptidase, N-terminal domain |Prolyl oligopeptidase, N-terminal domain |Pig (Sus scrofa) [TaxId: 9823]
d3bpnb1 : (ASP66) (VAL96) [view usage] : b.1.2.1 |Immunoglobulin-like beta-sandwich |Fibronectin type III |Fibronectin type III |automated matches |Human (Homo sapiens) [TaxId: 9606]
d1nc7d_ : (THR37) (GLY72) [view usage] : b.123.1.1 |Hypothetical protein TM1070 |Hypothetical protein TM1070 |Hypothetical protein TM1070 |Hypothetical protein TM1070 |Thermotoga maritima [TaxId: 2336]
d1ep5a_ : (LYS126) (LEU165) [view usage] : b.47.1.3 |Trypsin-like serine proteases |Trypsin-like serine proteases |Viral proteases |Viral capsid protein |Venezuelan equine encephalitis virus [TaxId: 11036]
d1uwwa_ : (TYR88) (LEU133) [view usage] : b.18.1.23 |Galactose-binding domain-like |Galactose-binding domain-like |Family 28 carbohydrate binding module, CBM28 |Endoglucanase (alkaline cellulase) |Bacillus sp. 1139 [TaxId: 1411]
d1wgea1 : (PHE20) (GLY49) [view usage] : g.41.17.1 |Rubredoxin-like |CSL zinc finger |CSL zinc finger |DelGEF-interacting protein 1, DelGIP1 |Mouse (Mus musculus) [TaxId: 10090]
d3sbpa1 : (LEU381) (GLY415) [view usage] : b.69.3.1 |7-bladed beta-propeller |Nitrous oxide reductase, N-terminal domain |Nitrous oxide reductase, N-terminal domain |automated matches |Pseudomonas stutzeri [TaxId: 316]
d1pv4b1 : (VAL54) (PHE89) [view usage] : b.40.4.5 |OB-fold |Nucleic acid-binding proteins |Cold shock DNA-binding domain-like |Rho termination factor, RNA-binding domain |Escherichia coli [TaxId: 562]
d2r3za_ : (GLY25) (PHE68) [view usage] : d.9.1.1 |IL8-like |Interleukin 8-like chemokines |Interleukin 8-like chemokines |automated matches |Mouse (Mus musculus) [TaxId: 10090]
d1wj1a_ : (ALA64) (SER93) [view usage] : b.55.1.2 |PH domain-like barrel |PH domain-like |Phosphotyrosine-binding domain (PTB) |Numb |Mouse (Mus musculus) [TaxId: 10090]
d1ep6c_ : (LYS126) (LEU165) [view usage] : b.47.1.3 |Trypsin-like serine proteases |Trypsin-like serine proteases |Viral proteases |Viral capsid protein |Venezuelan equine encephalitis virus [TaxId: 11036]
d3hp3f_ : (LYS24) (LYS64) [view usage] : d.9.1.1 |IL8-like |Interleukin 8-like chemokines |Interleukin 8-like chemokines |Stromal cell-derived factor-1 (SDF-1) |Human (Homo sapiens) [TaxId: 9606]
d3hp3b_ : (LYS24) (LEU62) [view usage] : d.9.1.1 |IL8-like |Interleukin 8-like chemokines |Interleukin 8-like chemokines |Stromal cell-derived factor-1 (SDF-1) |Human (Homo sapiens) [TaxId: 9606]
d3sw1a_ : (ARG80) (ALA134) [view usage] : d.110.3.0 |Profilin-like |PYP-like sensor domain (PAS domain) |automated matches |automated matches |Pseudomonas putida [TaxId: 160488]
d1uxbb_ : (ASN195) (ILE233) [view usage] : b.21.1.1 |Virus attachment protein globular domain |Virus attachment protein globular domain |Adenovirus fiber protein "knob" domain |Adenovirus fiber protein "knob" domain |Human adenovirus 37 [TaxId: 52275]
d2lbha_ : (LYS18) (PRO51) [view usage] : b.9.1.1 |Neurophysin II |Neurophysin II |Neurophysin II |Neurophysin II |Cow (Bos taurus) [TaxId: 9913]
d2k01a_ : (HIS25) (LEU66) [view usage] : d.9.1.1 |IL8-like |Interleukin 8-like chemokines |Interleukin 8-like chemokines |Stromal cell-derived factor-1 (SDF-1) |Human (Homo sapiens) [TaxId: 9606]
d1ivpa_ : (GLU63) (LEU93) [view usage] : b.50.1.1 |Acid proteases |Acid proteases |Retroviral protease (retropepsin) |Human immunodeficiency virus type 2 (HIV-2) protease |Human immunodeficiency virus type 2 [TaxId: 11709]
d1dyla_ : (CYS119) (LEU158) [view usage] : i.6.1.1 |Viruses and virus-receptor complexes |Viruses and virus-receptor complexes |Viruses and virus-receptor complexes |SFV capsid |Semliki forest virus [TaxId: 11033]
d1y8ba_ : (VAL189) (VAL217) [view usage] : c.1.13.1 |TIM beta/alpha-barrel |Malate synthase G |Malate synthase G |Malate synthase G |Escherichia coli [TaxId: 562]
d1g63b_ : (VAL138) (VAL172) [view usage] : c.34.1.1 |Homo-oligomeric flavin-containing Cys decarboxylases, HFCD |Homo-oligomeric flavin-containing Cys decarboxylases, HFCD |Homo-oligomeric flavin-containing Cys decarboxylases, HFCD |Epidermin modifying enzyme (peptidyl-cysteine decarboxylase) EpiD |Staphylococcus epidermidis [TaxId: 1282]
d1tfka_ : (SER655) (GLY695) [view usage] : d.243.1.1 |Colicin D/E5 nuclease domain |Colicin D/E5 nuclease domain |Colicin D nuclease domain |Colicin D nuclease domain |Escherichia coli [TaxId: 562]
d2ks4a_ : (GLY96) (ASN139) [view usage] : b.97.1.1 |Cytolysin/lectin |Cytolysin/lectin |Anemone pore-forming cytolysin |automated matches |Sea anemone (Stichodactyla helianthus) [TaxId: 6123]
d3lida2 : (ALA263) (ARG300) [view usage] : d.110.6.2 |Profilin-like |Sensory domain-like |YkuI C-terminal domain-like |GGDEF family protein VP0354 |Vibrio parahaemolyticus [TaxId: 670]
d4lmqf_ : (HIS25) (LYS64) [view usage] : d.9.1.1 |IL8-like |Interleukin 8-like chemokines |Interleukin 8-like chemokines |Stromal cell-derived factor-1 (SDF-1) |Human (Homo sapiens) [TaxId: 9606]
d3hp3j_ : (LYS24) (LYS64) [view usage] : d.9.1.1 |IL8-like |Interleukin 8-like chemokines |Interleukin 8-like chemokines |Stromal cell-derived factor-1 (SDF-1) |Human (Homo sapiens) [TaxId: 9606]
d4b7qa_ : (GLY348) (THR383) [view usage] : b.68.1.0 |6-bladed beta-propeller |Sialidases |automated matches |automated matches |Influenza a virus (a/california/07/2009(h1n1)) [TaxId: 641809]
d2g43b_ : (PRO82) (GLY119) [view usage] : g.44.1.5 |RING/U-box |RING/U-box |Zf-UBP |Ubiquitin carboxyl-terminal hydrolase 5, UBP5 |Human (Homo sapiens) [TaxId: 9606]
d2o8aa_ : (TRP206) (ASP240) [view usage] : d.159.1.3 |Metallo-dependent phosphatases |Metallo-dependent phosphatases |Protein serine/threonine phosphatase |Protein phosphatase-1 (PP-1) |Norway rat (Rattus norvegicus) [TaxId: 10116]
d1u74a_ : (GLU209) (ASP241) [view usage] : a.93.1.1 |Heme-dependent peroxidases |Heme-dependent peroxidases |CCP-like |Cytochrome c peroxidase, CCP |Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
d1hu9a1 : (SER444) (ARG535) [view usage] : a.119.1.1 |Lipoxigenase |Lipoxigenase |Plant lipoxigenases |Lipoxigenase, C-terminal domain |Soybean (Glycine max), isozyme L3 [TaxId: 3847]
d2ygta_ : (TYR152) (GLY222) [view usage] : f.6.1.0 |Leukocidin-like |Leukocidin-like |automated matches |automated matches |Clostridium perfringens [TaxId: 1502]
d1ep5c_ : (THR127) (LEU165) [view usage] : b.47.1.3 |Trypsin-like serine proteases |Trypsin-like serine proteases |Viral proteases |Viral capsid protein |Venezuelan equine encephalitis virus [TaxId: 11036]
d1f8na1 : (SER425) (LEU518) [view usage] : a.119.1.1 |Lipoxigenase |Lipoxigenase |Plant lipoxigenases |Lipoxigenase, C-terminal domain |Soybean (Glycine max), isozyme L1 [TaxId: 3847]
d2iuka2 : (THR451) (LEU544) [view usage] : a.119.1.1 |Lipoxigenase |Lipoxigenase |Plant lipoxigenases |automated matches |Soybean (Glycine max) [TaxId: 3847]
d1xo0a2 : (ILE185) (GLY229) [view usage] : d.163.1.1 |DNA breaking-rejoining enzymes |DNA breaking-rejoining enzymes |Lambda integrase-like, catalytic core |Cre recombinase |Bacteriophage P1 [TaxId: 10678]
d1pvpa2 : (ASP184) (VAL227) [view usage] : d.163.1.1 |DNA breaking-rejoining enzymes |DNA breaking-rejoining enzymes |Lambda integrase-like, catalytic core |Cre recombinase |Bacteriophage P1 [TaxId: 10678]
d1xx8a_ : (LYS21) (LYS66) [view usage] : b.34.13.1 |SH3-like barrel |Chromo domain-like |"Histone-like" proteins from archaea |automated matches |Sulfolobus acidocaldarius [TaxId: 2285]
d1qqrb_ : (LYS156) (ASN210) [view usage] : d.15.5.1 |beta-Grasp (ubiquitin-like) |Staphylokinase/streptokinase |Staphylokinase/streptokinase |Streptokinase |Streptococcus equisimilis [TaxId: 119602]
d1bd7a_ : (HIS88) (GLY117) [view usage] : b.11.1.1 |gamma-Crystallin-like |gamma-Crystallin-like |Crystallins/Ca-binding development proteins |beta-Crystallin |Norway rat (Rattus norvegicus), isoform E [TaxId: 10116]
d2nwgb_ : (HIS25) (ASN67) [view usage] : d.9.1.1 |IL8-like |Interleukin 8-like chemokines |Interleukin 8-like chemokines |Stromal cell-derived factor-1 (SDF-1) |Human (Homo sapiens) [TaxId: 9606]
d1vmca_ : (HIS25) (LYS68) [view usage] : d.9.1.1 |IL8-like |Interleukin 8-like chemokines |Interleukin 8-like chemokines |Stromal cell-derived factor-1 (SDF-1) |Human (Homo sapiens) [TaxId: 9606]
d1baia_ : (GLU81) (GLY118) [view usage] : b.50.1.1 |Acid proteases |Acid proteases |Retroviral protease (retropepsin) |Rous sarcoma virus protease |Rous sarcoma virus, strain pr-C [TaxId: 11886]
d2erma_ : (PRO25) (ILE56) [view usage] : b.42.1.1 |beta-Trefoil |Cytokine |Fibroblast growth factors (FGF) |Acidic FGF (FGF1) |Human (Homo sapiens) [TaxId: 9606]
d1sdfa_ : (HIS25) (ASN67) [view usage] : d.9.1.1 |IL8-like |Interleukin 8-like chemokines |Interleukin 8-like chemokines |Stromal cell-derived factor-1 (SDF-1) |Human (Homo sapiens) [TaxId: 9606]
d2iuja2 : (THR439) (HIS531) [view usage] : a.119.1.1 |Lipoxigenase |Lipoxigenase |Plant lipoxigenases |automated matches |Soybean (Glycine max) [TaxId: 3847]
d1v1pa2 : (THR109) (GLY158) [view usage] : d.15.6.1 |beta-Grasp (ubiquitin-like) |Superantigen toxins, C-terminal domain |Superantigen toxins, C-terminal domain |Exotoxin 1 (SET1, Superantigen-like protein 7) |Staphylococcus aureus [TaxId: 1280]
d1wfva_ : (PHE13) (GLY53) [view usage] : b.36.1.1 |PDZ domain-like |PDZ domain-like |PDZ domain |Membrane associated guanylate kinase inverted-2 (MAGI-2, KIAA0705) |Human (Homo sapiens) [TaxId: 9606]
d1nlze_ : (THR46) (SER77) [view usage] : c.37.1.11 |P-loop containing nucleoside triphosphate hydrolases |P-loop containing nucleoside triphosphate hydrolases |RecA protein-like (ATPase-domain) |Hexameric traffic ATPase, HP0525 |Helicobacter pylori [TaxId: 210]
List of distinct SCOP folds where this concept is used (in one or more of its domains):
b.68, c.1, a.119, d.159, b.69, b.47, a.93, b.50, i.6, b.40, c.37, c.55, b.18, b.1, d.110, b.42, b.21, b.55, b.34, b.11,
b.97, c.34, d.15, d.113, d.136, b.36, b.123, d.9, g.41, f.6, g.44, d.163, d.245, d.243, b.9