Tableau information
Concept source: d2irpa_ amino acid (a.a.) range (SER33)(PHE91)
nSSEs in this Concept: 4
String of secondary struct.elems. (SSEs) defining this concept: EEEH
Each SSE's a.a.range: (start resi) (end resi) SSEtype (H=Helix; E=Strand) followed by a numeric SSE ID:
(SER33) (LYS39) E1
(GLU43) (THR48) E2
(ILE62) (ASP66) E3
(SER78) (PHE91) H4
Orientation angles° of SSE-pairs; those in contact shown in bold font
E1
E2 151.2° E2
E3 -56.5° 152.0° E3
H4 -41.7° 132.3° -59.8°
Footnote: Inferred from this concept's usages (listed below) was the angular variance of 1σ = ±13.0° about each orientation angle shown above.
Loci of concept usages (shown as a range of a.a. residue ids) in SCOP(v2.05) domains, along with their brief legend taken from SCOP
d1pm7b_ : (MET1) (GLY40) [view usage] : b.82.1.1 |Double-stranded beta-helix |RmlC-like cupins |dTDP-sugar isomerase |dTDP-4-dehydrorhamnose 3,5-epimerase RmlC |Mycobacterium tuberculosis [TaxId: 1773]
d1sdja2 : (ASN194) (HIS238) [view usage] : d.21.1.2 |Diaminopimelate epimerase-like |Diaminopimelate epimerase-like |PhzC/PhzF-like |Hypothetical protein YddE |Escherichia coli [TaxId: 562]
d1nywb_ : (ALA11) (GLY49) [view usage] : b.82.1.1 |Double-stranded beta-helix |RmlC-like cupins |dTDP-sugar isomerase |dTDP-4-dehydrorhamnose 3,5-epimerase RmlC |Streptococcus suis [TaxId: 1307]
d2hnwa_ : (LYS18) (TYR49) [view usage] : b.9.1.1 |Neurophysin II |Neurophysin II |Neurophysin II |Neurophysin II |Cow (Bos taurus) [TaxId: 9913]
d2fuaa_ : (ALA27) (ARG84) [view usage] : c.74.1.1 |AraD/HMP-PK domain-like |AraD/HMP-PK domain-like |AraD-like aldolase/epimerase |L-fuculose-1-phosphate aldolase |Escherichia coli [TaxId: 562]
d1i2sa_ : (ILE249) (ALA289) [view usage] : e.3.1.1 |beta-lactamase/transpeptidase-like |beta-lactamase/transpeptidase-like |beta-Lactamase/D-ala carboxypeptidase |beta-Lactamase, class A |Bacillus licheniformis [TaxId: 1402]
d1npoc_ : (ALA18) (ASN48) [view usage] : b.9.1.1 |Neurophysin II |Neurophysin II |Neurophysin II |Neurophysin II |Cow (Bos taurus) [TaxId: 9913]
d1nzca_ : (ALA11) (GLY49) [view usage] : b.82.1.1 |Double-stranded beta-helix |RmlC-like cupins |dTDP-sugar isomerase |dTDP-4-dehydrorhamnose 3,5-epimerase RmlC |Streptococcus suis [TaxId: 1307]
d2iy2a_ : (LYS28) (GLU71) [view usage] : d.17.3.1 |Cystatin-like |DsbC/DsbG N-terminal domain-like |DsbC/DsbG N-terminal domain-like |automated matches |Escherichia coli [TaxId: 562]
d3ouua2 : (ARG208) (GLY268) [view usage] : d.142.1.0 |ATP-grasp |Glutathione synthetase ATP-binding domain-like |automated matches |automated matches |Campylobacter jejuni [TaxId: 192222]
d1npoa_ : (LYS18) (LEU50) [view usage] : b.9.1.1 |Neurophysin II |Neurophysin II |Neurophysin II |Neurophysin II |Cow (Bos taurus) [TaxId: 9913]
d1nxma_ : (ALA11) (GLY49) [view usage] : b.82.1.1 |Double-stranded beta-helix |RmlC-like cupins |dTDP-sugar isomerase |dTDP-4-dehydrorhamnose 3,5-epimerase RmlC |Streptococcus suis [TaxId: 1307]
d2hnva_ : (LYS18) (ASN48) [view usage] : b.9.1.1 |Neurophysin II |Neurophysin II |Neurophysin II |Neurophysin II |Cow (Bos taurus) [TaxId: 9913]
d3hfae_ : (ALA480) (SER522) [view usage] : d.153.1.4 |Ntn hydrolase-like |N-terminal nucleophile aminohydrolases (Ntn hydrolases) |Proteasome subunits |automated matches |Mycobacterium tuberculosis [TaxId: 1773]
d1bcma1 : (GLU493) (ALA526) [view usage] : b.48.1.1 |mu transposase, C-terminal domain |mu transposase, C-terminal domain |mu transposase, C-terminal domain |mu transposase, C-terminal domain |Bacteriophage Mu [TaxId: 10677]
d1myra_ : (THR470) (SER500) [view usage] : c.1.8.4 |TIM beta/alpha-barrel |(Trans)glycosidases |Family 1 of glycosyl hydrolase |Plant beta-glucosidase (myrosinase) |White mustard (Sinapis alba) [TaxId: 3728]
d1l5ca_ : (LYS18) (LEU50) [view usage] : b.9.1.1 |Neurophysin II |Neurophysin II |Neurophysin II |Neurophysin II |Cow (Bos taurus) [TaxId: 9913]
d1e4mm_ : (THR470) (SER500) [view usage] : c.1.8.4 |TIM beta/alpha-barrel |(Trans)glycosidases |Family 1 of glycosyl hydrolase |Plant beta-glucosidase (myrosinase) |White mustard (Sinapis alba) [TaxId: 3728]
d1nsxb_ : (HIS186) (GLN221) [view usage] : b.30.5.4 |Supersandwich |Galactose mutarotase-like |Aldose 1-epimerase (mutarotase) |Galactose mutarotase |Lactococcus lactis [TaxId: 1358]
d1enfa2 : (GLU107) (LYS151) [view usage] : d.15.6.1 |beta-Grasp (ubiquitin-like) |Superantigen toxins, C-terminal domain |Superantigen toxins, C-terminal domain |Staphylococcal enterotoxin H, SEH |Staphylococcus aureus [TaxId: 1280]
d1nsma_ : (HIS186) (GLN221) [view usage] : b.30.5.4 |Supersandwich |Galactose mutarotase-like |Aldose 1-epimerase (mutarotase) |Galactose mutarotase |Lactococcus lactis [TaxId: 1358]
d2bn2a_ : (LYS18) (ASN48) [view usage] : b.9.1.1 |Neurophysin II |Neurophysin II |Neurophysin II |Neurophysin II |Cow (Bos taurus) [TaxId: 9913]
d1jk4a_ : (LYS18) (ASN48) [view usage] : b.9.1.1 |Neurophysin II |Neurophysin II |Neurophysin II |Neurophysin II |Cow (Bos taurus) [TaxId: 9913]
d2fmla2 : (ASN150) (GLU204) [view usage] : d.113.1.6 |Nudix |Nudix |BT0354 N-terminal domain-like |Hypothetical protein EF2700, N-terminal domain |Enterococcus faecalis [TaxId: 1351]
d2jhba_ : (GLY95) (ALA141) [view usage] : b.54.1.1 |Core binding factor beta, CBF |Core binding factor beta, CBF |Core binding factor beta, CBF |Core binding factor beta, CBF |Mouse (Mus musculus) [TaxId: 10090]
d3qt3a_ : (THR43) (PHE76) [view usage] : a.102.1.8 |alpha/alpha toroid |Six-hairpin glycosidases |CPF0428-like |Hypothetical protein CPF0428 |Clostridium perfringens [TaxId: 1502]
d2hnua_ : (LYS18) (ASN48) [view usage] : b.9.1.1 |Neurophysin II |Neurophysin II |Neurophysin II |Neurophysin II |Cow (Bos taurus) [TaxId: 9913]
d2pqea_ : (LEU7) (LYS70) [view usage] : b.40.1.1 |OB-fold |Staphylococcal nuclease |Staphylococcal nuclease |Staphylococcal nuclease |Staphylococcus aureus [TaxId: 1280]
d2kp5a_ : (THR4) (ARG33) [view usage] : b.11.1.0 |gamma-Crystallin-like |gamma-Crystallin-like |automated matches |automated matches |Hahella chejuensis [TaxId: 349521]
d3hfax_ : (ALA480) (GLY523) [view usage] : d.153.1.4 |Ntn hydrolase-like |N-terminal nucleophile aminohydrolases (Ntn hydrolases) |Proteasome subunits |automated matches |Mycobacterium tuberculosis [TaxId: 1773]
d3wu6e_ : (GLY694) (GLY730) [view usage] : d.14.1.10 |Ribosomal protein S5 domain 2-like |Ribosomal protein S5 domain 2-like |ATP-dependent protease Lon (La), catalytic domain |ATP-dependent protease Lon (La), catalytic domain |Escherichia coli [TaxId: 562]
d1ej6d_ : (ASP88) (GLN114) [view usage] : i.7.1.1 |Reovirus components |Reovirus components |Reovirus components |Reovirus core |Reovirus sp. [TaxId: 10891]
d2ixlc_ : (ALA11) (GLY49) [view usage] : b.82.1.1 |Double-stranded beta-helix |RmlC-like cupins |dTDP-sugar isomerase |dTDP-4-dehydrorhamnose 3,5-epimerase RmlC |Streptococcus suis [TaxId: 1307]
d3wu4e_ : (GLY694) (GLY730) [view usage] : d.14.1.10 |Ribosomal protein S5 domain 2-like |Ribosomal protein S5 domain 2-like |ATP-dependent protease Lon (La), catalytic domain |ATP-dependent protease Lon (La), catalytic domain |Escherichia coli [TaxId: 562]
d1dwam_ : (THR470) (SER500) [view usage] : c.1.8.4 |TIM beta/alpha-barrel |(Trans)glycosidases |Family 1 of glycosyl hydrolase |Plant beta-glucosidase (myrosinase) |White mustard (Sinapis alba) [TaxId: 3728]
d1f77a2 : (ARG108) (LYS151) [view usage] : d.15.6.1 |beta-Grasp (ubiquitin-like) |Superantigen toxins, C-terminal domain |Superantigen toxins, C-terminal domain |Staphylococcal enterotoxin H, SEH |Staphylococcus aureus [TaxId: 1280]
d3l9va_ : (PRO148) (ALA184) [view usage] : c.47.1.0 |Thioredoxin fold |Thioredoxin-like |automated matches |automated matches |Salmonella enterica [TaxId: 216597]
List of distinct SCOP folds where this concept is used (in one or more of its domains):
e.3, c.1, b.82, b.30, a.102, c.74, b.40, c.47, d.153, d.14, d.17, d.21, d.142, b.11, d.15, d.113, i.7, b.54, b.9, b.48