Protein Concepts Dictionary

Tableau information

Concept source:  d3lzia2  amino acid (a.a.) range (GLN389)(ASN424)

nSSEs in this Concept: 4

String of secondary struct.elems. (SSEs) defining this concept: EEEH

Each SSE's a.a.range: (start resi) (end resi) SSEtype (H=Helix; E=Strand) followed by a numeric SSE ID:
	  (GLN389)  (ILE400) E1
	  (ASN402)  (TYR406) E2
	  (TYR406)  (ASP411) E3
	  (LEU415)  (ASN424) H4

Orientation angles° of SSE-pairs; those in contact shown in bold font
          E1                          
E2       77.9°   E2                   
E3      163.0°  -86.8°   E3            
H4      118.4°   74.8°   49.1°       
Footnote: Inferred from this concept's usages (listed below) was the angular variance of 1σ = ±4.2°  about each orientation angle shown above.

Loci of concept usages (shown as a range of a.a. residue ids) in SCOP(v2.05) domains, along with their brief legend taken from SCOP
 d2dtud2 :   (GLN389)  (ASN424)   [view usage] : e.8.1.1 |DNA/RNA polymerases |DNA/RNA polymerases |DNA polymerase I |Family B DNA polymerase |Bacteriophage RB69 [TaxId: 12353]
 d3taga2 :   (ALA394)  (ASN424)   [view usage] : e.8.1.1 |DNA/RNA polymerases |DNA/RNA polymerases |DNA polymerase I |Family B DNA polymerase |Bacteriophage RB69 [TaxId: 12353]
 d3suqa2 :   (VAL388)  (ASN424)   [view usage] : e.8.1.1 |DNA/RNA polymerases |DNA/RNA polymerases |DNA polymerase I |Family B DNA polymerase |Bacteriophage RB69 [TaxId: 12353]
 d3rmca2 :   (GLN389)  (GLN422)   [view usage] : e.8.1.1 |DNA/RNA polymerases |DNA/RNA polymerases |DNA polymerase I |Family B DNA polymerase |Bacteriophage RB69 [TaxId: 12353]
 d3rmbd2 :   (GLN389)  (GLN422)   [view usage] : e.8.1.1 |DNA/RNA polymerases |DNA/RNA polymerases |DNA polymerase I |Family B DNA polymerase |Bacteriophage RB69 [TaxId: 12353]
 d3rmbc2 :   (GLN389)  (GLN422)   [view usage] : e.8.1.1 |DNA/RNA polymerases |DNA/RNA polymerases |DNA polymerase I |Family B DNA polymerase |Bacteriophage RB69 [TaxId: 12353]
 d4i9la2 :   (GLN389)  (ASN424)   [view usage] : e.8.1.1 |DNA/RNA polymerases |DNA/RNA polymerases |DNA polymerase I |Family B DNA polymerase |Bacteriophage RB69 [TaxId: 12353]
 d1clqa2 :   (ALA394)  (ASN424)   [view usage] : e.8.1.1 |DNA/RNA polymerases |DNA/RNA polymerases |DNA polymerase I |Family B DNA polymerase |Bacteriophage RB69 [TaxId: 12353]
 d2dy4c2 :   (GLN389)  (GLN422)   [view usage] : e.8.1.1 |DNA/RNA polymerases |DNA/RNA polymerases |DNA polymerase I |Family B DNA polymerase |Bacteriophage RB69 [TaxId: 12353]

List of distinct SCOP folds where this concept is used (in one or more of its domains):
   e.8