Tableau information
Concept source: d3dsza_ amino acid (a.a.) range (THR104)(GLY160)
nSSEs in this Concept: 4
String of secondary struct.elems. (SSEs) defining this concept: EEEH
Each SSE's a.a.range: (start resi) (end resi) SSEtype (H=Helix; E=Strand) followed by a numeric SSE ID:
(THR104) (VAL110) E1
(ALA119) (LYS125) E2
(ARG130) (ARG140) E3
(SER146) (GLY160) H4
Orientation angles° of SSE-pairs; those in contact shown in bold font
E1
E2 165.6° E2
E3 -30.1° 163.5° E3
H4 137.8° -27.7° 166.0°
Footnote: Inferred from this concept's usages (listed below) was the angular variance of 1σ = ±9.5° about each orientation angle shown above.
Loci of concept usages (shown as a range of a.a. residue ids) in SCOP(v2.05) domains, along with their brief legend taken from SCOP
d1iuba_ : (LEU63) (GLY106) [view usage] : b.68.8.1 |6-bladed beta-propeller |Fucose-specific lectin |Fucose-specific lectin |Fucose-specific lectin |Orange peel mushroom (Aleuria aurantia) [TaxId: 5188]
d1pzda2 : (HIS826) (GLY874) [view usage] : d.105.1.2 |Subdomain of clathrin and coatomer appendage domain |Subdomain of clathrin and coatomer appendage domain |Coatomer appendage domain |Coatomer gamma subunit, C-terminal subdomain |Cow (Bos taurus) [TaxId: 9913]
d1pd5j_ : (GLU81) (GLY128) [view usage] : c.43.1.1 |CoA-dependent acyltransferases |CoA-dependent acyltransferases |CAT-like |Chloramphenicol acetyltransferase, CAT |Escherichia coli [TaxId: 562]
d3a7aa2 : (PHE251) (LEU297) [view usage] : d.224.1.3 |SufE/NifU |SufE/NifU |SP1160 C-terminal domain-like |Two-domain LplA, C-terminal domain |Escherichia coli [TaxId: 562]
d3niaa_ : (VAL225) (THR285) [view usage] : e.3.1.0 |beta-lactamase/transpeptidase-like |beta-lactamase/transpeptidase-like |automated matches |automated matches |Pseudomonas aeruginosa [TaxId: 287]
d4fu4a2 : (ASP335) (LYS369) [view usage] : b.66.1.0 |4-bladed beta-propeller |Hemopexin-like domain |automated matches |automated matches |Human (Homo sapiens) [TaxId: 9606]
d1epab_ : (GLY83) (GLY139) [view usage] : b.60.1.1 |Lipocalins |Lipocalins |Retinol binding protein-like |Retinoic acid-binding protein |Norway rat (Rattus norvegicus) [TaxId: 10116]
d3a5ka_ : (ILE145) (SER201) [view usage] : c.45.1.2 |(Phosphotyrosine protein) phosphatases II |(Phosphotyrosine protein) phosphatases II |Higher-molecular-weight phosphotyrosine protein phosphatases |automated matches |Human (Homo sapiens) [TaxId: 9606]
d1w97l2 : (GLY148) (SER181) [view usage] : c.55.1.11 |Ribonuclease H-like motif |Actin-like ATPase domain |Cyto-EpsL domain |Cytoplasmic domain of general secretion pathway protein L, EpsL |Vibrio cholerae [TaxId: 666]
d1h2oa_ : (TYR79) (GLY153) [view usage] : d.129.3.1 |TBP-like |Bet v1-like |Pathogenesis-related protein 10 (PR10)-like |Major tree pollen allergen |Sweet cherry (Prunus avium), pru av 1 [TaxId: 42229]
d1xccd_ : (GLU116) (THR170) [view usage] : c.47.1.10 |Thioredoxin fold |Thioredoxin-like |Glutathione peroxidase-like |1-Cys peroxiredoxin |Plasmodium yoelii yoelii [TaxId: 73239]
d3tl1a_ : (ARG76) (ALA158) [view usage] : d.129.3.0 |TBP-like |Bet v1-like |automated matches |automated matches |Streptomyces coelicolor [TaxId: 1902]
d2resa1 : (ARG76) (GLN152) [view usage] : d.129.3.6 |TBP-like |Bet v1-like |oligoketide cyclase/dehydrase-like |Multifunctional enzyme TcmN, cyclase/aromatase domain |Streptomyces glaucescens [TaxId: 1907]
d1ck7a1 : (GLU518) (PRO555) [view usage] : b.66.1.1 |4-bladed beta-propeller |Hemopexin-like domain |Hemopexin-like domain |Gelatinase A (MMP-2), C-terminal domain |Human (Homo sapiens) [TaxId: 9606]
d3dblb_ : (LEU162) (LEU204) [view usage] : c.111.1.2 |Activating enzymes of the ubiquitin-like proteins |Activating enzymes of the ubiquitin-like proteins |Ubiquitin activating enzymes (UBA) |UBA3 |Human (Homo sapiens) [TaxId: 9606]
d1xjsa_ : (SER31) (LYS83) [view usage] : d.224.1.2 |SufE/NifU |SufE/NifU |NifU/IscU domain |NifU |Bacillus subtilis [TaxId: 1423]
d2fh7a2 : (TYR1804) (GLU1868) [view usage] : c.45.1.2 |(Phosphotyrosine protein) phosphatases II |(Phosphotyrosine protein) phosphatases II |Higher-molecular-weight phosphotyrosine protein phosphatases |automated matches |Human (Homo sapiens) [TaxId: 9606]
d3voya_ : (PRO479) (ASN526) [view usage] : e.3.1.0 |beta-lactamase/transpeptidase-like |beta-lactamase/transpeptidase-like |automated matches |automated matches |Human (Homo sapiens) [TaxId: 9606]
d3dbrd_ : (LEU161) (PRO208) [view usage] : c.111.1.2 |Activating enzymes of the ubiquitin-like proteins |Activating enzymes of the ubiquitin-like proteins |Ubiquitin activating enzymes (UBA) |UBA3 |Human (Homo sapiens) [TaxId: 9606]
d2a6aa1 : (VAL3) (LEU48) [view usage] : c.55.1.9 |Ribonuclease H-like motif |Actin-like ATPase domain |YeaZ-like |Hypothetical protein TM0874 |Thermotoga maritima [TaxId: 2336]
d2xuaa_ : (PRO5) (TRP42) [view usage] : c.69.1.0 |alpha/beta-Hydrolases |alpha/beta-Hydrolases |automated matches |automated matches |Burkholderia xenovorans [TaxId: 266265]
d2mmca_ : (GLU36) (ILE81) [view usage] : c.37.1.8 |P-loop containing nucleoside triphosphate hydrolases |P-loop containing nucleoside triphosphate hydrolases |G proteins |Ran |Human (Homo sapiens) [TaxId: 9606]
d1vsam1 : (ARG23) (ALA77) [view usage] : c.55.4.1 |Ribonuclease H-like motif |Translational machinery components |Ribosomal protein L18 and S11 |Ribosomal protein L18 (L18p) |Thermus thermophilus [TaxId: 274]
d3zq3a_ : (GLU106) (GLY161) [view usage] : b.60.1.1 |Lipocalins |Lipocalins |Retinol binding protein-like |automated matches |Norway rat (Rattus norvegicus) [TaxId: 10116]
d1prra2 : (ARG92) (TYR121) [view usage] : b.11.1.1 |gamma-Crystallin-like |gamma-Crystallin-like |Crystallins/Ca-binding development proteins |Protein S |Myxococcus xanthus [TaxId: 34]
d1v1qb_ : (ALA14) (GLN60) [view usage] : b.40.4.3 |OB-fold |Nucleic acid-binding proteins |Single strand DNA-binding domain, SSB |Primosomal replication protein N, PriB |Escherichia coli [TaxId: 562]
d3qi0c_ : (THR184) (THR213) [view usage] : b.69.5.2 |7-bladed beta-propeller |RCC1/BLIP-II |beta-lactamase inhibitor protein-II, BLIP-II |automated matches |Streptomyces exfoliatus [TaxId: 1905]
d3ni8a_ : (HIS81) (GLY153) [view usage] : d.129.3.0 |TBP-like |Bet v1-like |automated matches |automated matches |Malaria parasite (Plasmodium falciparum) [TaxId: 5833]
d1uqwa_ : (PHE157) (LEU192) [view usage] : c.94.1.1 |Periplasmic binding protein-like II |Periplasmic binding protein-like II |Phosphate binding protein-like |Hypothetical protein YliB |Escherichia coli [TaxId: 562]
d2fffb1 : (ILE649) (SER708) [view usage] : e.3.1.1 |beta-lactamase/transpeptidase-like |beta-lactamase/transpeptidase-like |beta-Lactamase/D-ala carboxypeptidase |Penicillin-binding protein 1b, transpeptidase domain |Pneumococcus (Streptococcus pneumoniae) [TaxId: 1313]
d1ka9h_ : (LEU153) (PHE197) [view usage] : c.23.16.1 |Flavodoxin-like |Class I glutamine amidotransferase-like |Class I glutamine amidotransferases (GAT) |GAT subunit, HisH, (or domain) of imidazoleglycerolphosphate synthase HisF |Thermus thermophilus [TaxId: 274]
d1j5ca_ : (VAL21) (SER57) [view usage] : b.6.1.1 |Cupredoxin-like |Cupredoxins |Plastocyanin/azurin-like |Plastocyanin |Synechocystis sp. PCC 6803 [TaxId: 1148]
d1b9ha_ : (GLY165) (CYS217) [view usage] : c.67.1.4 |PLP-dependent transferase-like |PLP-dependent transferases |GABA-aminotransferase-like |3-amino-5-hydroxybenzoic acid synthase (AHBA synthase) |Amycolatopsis mediterranei [TaxId: 33910]
d1ofza_ : (LEU63) (GLY106) [view usage] : b.68.8.1 |6-bladed beta-propeller |Fucose-specific lectin |Fucose-specific lectin |Fucose-specific lectin |Orange peel mushroom (Aleuria aurantia) [TaxId: 5188]
d1xcca_ : (GLU116) (THR170) [view usage] : c.47.1.10 |Thioredoxin fold |Thioredoxin-like |Glutathione peroxidase-like |1-Cys peroxiredoxin |Plasmodium yoelii yoelii [TaxId: 73239]
d3c7xa_ : (THR325) (PRO356) [view usage] : b.66.1.0 |4-bladed beta-propeller |Hemopexin-like domain |automated matches |automated matches |Human (Homo sapiens) [TaxId: 9606]
d3c7xa_ : (ASP413) (ASN452) [view usage] : b.66.1.0 |4-bladed beta-propeller |Hemopexin-like domain |automated matches |automated matches |Human (Homo sapiens) [TaxId: 9606]
d1r4xa2 : (HIS826) (VAL873) [view usage] : d.105.1.2 |Subdomain of clathrin and coatomer appendage domain |Subdomain of clathrin and coatomer appendage domain |Coatomer appendage domain |Coatomer gamma subunit, C-terminal subdomain |Human (Homo sapiens) [TaxId: 9606]
d1q16a2 : (ASP42) (ARG107) [view usage] : c.81.1.1 |Formate dehydrogenase/DMSO reductase, domains 1-3 |Formate dehydrogenase/DMSO reductase, domains 1-3 |Formate dehydrogenase/DMSO reductase, domains 1-3 |Respiratory nitrate reductase 1 alpha chain |Escherichia coli [TaxId: 562]
d2hqya2 : (ASP42) (LYS88) [view usage] : d.108.1.4 |Acyl-CoA N-acyltransferases (Nat) |Acyl-CoA N-acyltransferases (Nat) |FemXAB nonribosomal peptidyltransferases |Hypothetical protein BT3689 |Bacteroides thetaiotaomicron [TaxId: 818]
d1b9ia_ : (GLY165) (CYS217) [view usage] : c.67.1.4 |PLP-dependent transferase-like |PLP-dependent transferases |GABA-aminotransferase-like |3-amino-5-hydroxybenzoic acid synthase (AHBA synthase) |Amycolatopsis mediterranei [TaxId: 33910]
d3hlwa_ : (VAL249) (LEU290) [view usage] : e.3.1.1 |beta-lactamase/transpeptidase-like |beta-lactamase/transpeptidase-like |beta-Lactamase/D-ala carboxypeptidase |automated matches |Escherichia coli [TaxId: 562]
d4k7gd_ : (ALA145) (GLU207) [view usage] : d.21.1.0 |Diaminopimelate epimerase-like |Diaminopimelate epimerase-like |automated matches |automated matches |Agrobacterium vitis [TaxId: 311402]
d3dbrb_ : (LEU162) (LEU204) [view usage] : c.111.1.2 |Activating enzymes of the ubiquitin-like proteins |Activating enzymes of the ubiquitin-like proteins |Ubiquitin activating enzymes (UBA) |UBA3 |Human (Homo sapiens) [TaxId: 9606]
d2bg1a1 : (ILE649) (SER708) [view usage] : e.3.1.1 |beta-lactamase/transpeptidase-like |beta-lactamase/transpeptidase-like |beta-Lactamase/D-ala carboxypeptidase |Penicillin-binding protein 1b, transpeptidase domain |Pneumococcus (Streptococcus pneumoniae) [TaxId: 1313]
d3ir5a1 : (LYS43) (ARG107) [view usage] : c.81.1.1 |Formate dehydrogenase/DMSO reductase, domains 1-3 |Formate dehydrogenase/DMSO reductase, domains 1-3 |Formate dehydrogenase/DMSO reductase, domains 1-3 |automated matches |Escherichia coli K-12 [TaxId: 83333]
d2qima_ : (LEU78) (HIS153) [view usage] : d.129.3.1 |TBP-like |Bet v1-like |Pathogenesis-related protein 10 (PR10)-like |automated matches |Yellow lupine (Lupinus luteus) [TaxId: 3873]
d3j6vk_ : (ILE88) (LYS145) [view usage] : i.1.1.3 |Ribosome and ribosomal fragments |Ribosome and ribosomal fragments |Small subunit |Eukaryotic, mitochondrial (28S subunit) |Cow (Bos taurus) [TaxId: 9913]
d1u60a_ : (PRO257) (GLY304) [view usage] : e.3.1.2 |beta-lactamase/transpeptidase-like |beta-lactamase/transpeptidase-like |Glutaminase |Probable glutaminase YbaS |Escherichia coli [TaxId: 562]
d1xccb_ : (GLU116) (THR170) [view usage] : c.47.1.10 |Thioredoxin fold |Thioredoxin-like |Glutathione peroxidase-like |1-Cys peroxiredoxin |Plasmodium yoelii yoelii [TaxId: 73239]
d3voza_ : (PRO479) (ASN526) [view usage] : e.3.1.0 |beta-lactamase/transpeptidase-like |beta-lactamase/transpeptidase-like |automated matches |automated matches |Human (Homo sapiens) [TaxId: 9606]
d1xxua_ : (PHE88) (THR152) [view usage] : c.47.1.10 |Thioredoxin fold |Thioredoxin-like |Glutathione peroxidase-like |Putative peroxiredoxin Rv2238c/MT2298 |Mycobacterium tuberculosis [TaxId: 1773]
d3egwa1 : (ASP42) (ARG107) [view usage] : c.81.1.1 |Formate dehydrogenase/DMSO reductase, domains 1-3 |Formate dehydrogenase/DMSO reductase, domains 1-3 |Formate dehydrogenase/DMSO reductase, domains 1-3 |automated matches |Escherichia coli K-12 [TaxId: 83333]
d2qosc_ : (GLY101) (ALA152) [view usage] : b.60.1.1 |Lipocalins |Lipocalins |Retinol binding protein-like |automated matches |Human (Homo sapiens) [TaxId: 9606]
d2reza_ : (ARG76) (ARG149) [view usage] : d.129.3.6 |TBP-like |Bet v1-like |oligoketide cyclase/dehydrase-like |Multifunctional enzyme TcmN, cyclase/aromatase domain |Streptomyces glaucescens [TaxId: 1907]
d2bh1a1 : (GLY148) (SER181) [view usage] : c.55.1.0 |Ribonuclease H-like motif |Actin-like ATPase domain |automated matches |automated matches |Vibrio cholerae [TaxId: 666]
d1t6aa_ : (VAL55) (THR107) [view usage] : d.129.8.1 |TBP-like |Rbstp2229 protein |Rbstp2229 protein |Rbstp2229 protein |Bacillus stearothermophilus [TaxId: 1422]
d1pexa_ : (ALA330) (LYS363) [view usage] : b.66.1.1 |4-bladed beta-propeller |Hemopexin-like domain |Hemopexin-like domain |Collagenase-3 (MMP-13), C-terminal domain |Human (Homo sapiens) [TaxId: 9606]
d1pexa_ : (LYS375) (LEU414) [view usage] : b.66.1.1 |4-bladed beta-propeller |Hemopexin-like domain |Hemopexin-like domain |Collagenase-3 (MMP-13), C-terminal domain |Human (Homo sapiens) [TaxId: 9606]
d1vs5k1 : (GLY18) (ALA72) [view usage] : c.55.4.1 |Ribonuclease H-like motif |Translational machinery components |Ribosomal protein L18 and S11 |Ribosomal protein S11 |Escherichia coli [TaxId: 562]
d2aexa_ : (PRO237) (GLY308) [view usage] : d.248.1.0 |Coproporphyrinogen III oxidase |Coproporphyrinogen III oxidase |automated matches |automated matches |Human (Homo sapiens) [TaxId: 9606]
List of distinct SCOP folds where this concept is used (in one or more of its domains):
b.68, e.3, c.67, c.69, c.81, c.94, b.69, i.1, c.45, d.129, c.23, b.40, c.37, c.47, c.55, b.60, d.248, b.6, d.108, c.43,
d.21, c.111, b.11, d.105, d.224, b.66