Tableau information
Concept source: d1b3aa_ amino acid (a.a.) range (LYS25)(MET67)
nSSEs in this Concept: 4
String of secondary struct.elems. (SSEs) defining this concept: EEEH
Each SSE's a.a.range: (start resi) (end resi) SSEtype (H=Helix; E=Strand) followed by a numeric SSE ID:
(LYS25) (TYR29) E1
(PRO37) (THR43) E2
(ARG47) (ASN52) E3
(LYS56) (MET67) H4
Orientation angles° of SSE-pairs; those in contact shown in bold font
E1
E2 163.3° E2
E3 -47.2° 149.4° E3
H4 -119.0° 56.5° -125.7°
Footnote: Inferred from this concept's usages (listed below) was the angular variance of 1σ = ±6.0° about each orientation angle shown above.
Loci of concept usages (shown as a range of a.a. residue ids) in SCOP(v2.05) domains, along with their brief legend taken from SCOP
d1o7yc_ : (LYS26) (VAL68) [view usage] : d.9.1.1 |IL8-like |Interleukin 8-like chemokines |Interleukin 8-like chemokines |IP-10/CXCL10 |Human (Homo sapiens) [TaxId: 9606]
d3i8za_ : (GLU14) (LEU49) [view usage] : b.34.13.2 |SH3-like barrel |Chromo domain-like |Chromo domain |automated matches |Human (Homo sapiens) [TaxId: 9606]
d1msga_ : (GLN24) (ASN68) [view usage] : d.9.1.1 |IL8-like |Interleukin 8-like chemokines |Interleukin 8-like chemokines |Melanoma growth stimulating activity (MGSA) |Human (Homo sapiens) [TaxId: 9606]
d1hrja_ : (GLU26) (LEU65) [view usage] : d.9.1.1 |IL8-like |Interleukin 8-like chemokines |Interleukin 8-like chemokines |RANTES (regulated upon activation, normal T-cell expressed and secreted) |Human (Homo sapiens) [TaxId: 9606]
d1cvia_ : (SER1280) (GLY1329) [view usage] : c.60.1.2 |Phosphoglycerate mutase-like |Phosphoglycerate mutase-like |Histidine acid phosphatase |Prostatic acid phosphatase |Human (Homo sapiens) [TaxId: 9606]
d3n52b_ : (GLN24) (ASN68) [view usage] : d.9.1.1 |IL8-like |Interleukin 8-like chemokines |Interleukin 8-like chemokines |Macrophage inflammatory protein-2 |Mouse (Mus musculus) [TaxId: 10090]
d2cmzc_ : (LYS217) (ALA248) [view usage] : e.76.1.2 |Viral glycoprotein ectodomain-like |Viral glycoprotein ectodomain-like |Spike glycoprotein-like |automated matches |Vesicular stomatitis indiana virus [TaxId: 11277]
d1pfma_ : (THR25) (GLU69) [view usage] : d.9.1.1 |IL8-like |Interleukin 8-like chemokines |Interleukin 8-like chemokines |Platelet factor 4, PF4 |Human (Homo sapiens) [TaxId: 9606]
d1hhva_ : (SER30) (GLN68) [view usage] : d.9.1.1 |IL8-like |Interleukin 8-like chemokines |Interleukin 8-like chemokines |Macrophage inflammatory protein, MIP |Kaposi's sarcoma-associated herpesvirus, VMIP-II [TaxId: 37296]
d3rjpa_ : (ASP136) (MET170) [view usage] : a.4.6.0 |DNA/RNA-binding 3-helical bundle |C-terminal effector domain of the bipartite response regulators |automated matches |automated matches |Streptococcus pyogenes [TaxId: 1314]
d1f9sa_ : (SER26) (GLU69) [view usage] : d.9.1.1 |IL8-like |Interleukin 8-like chemokines |Interleukin 8-like chemokines |Platelet factor 4, PF4 |Human (Homo sapiens) [TaxId: 9606]
d1qe6c_ : (LYS23) (SER72) [view usage] : d.9.1.1 |IL8-like |Interleukin 8-like chemokines |Interleukin 8-like chemokines |Interleukin-8, IL-8 |Human (Homo sapiens) [TaxId: 9606]
d2jmua1 : (HIS52) (GLY97) [view usage] : d.63.1.2 |CYTH-like phosphatases |CYTH-like phosphatases |CYTH domain |Thiamine-triphosphatase (ThTPase) |Mouse (Mus musculus) [TaxId: 10090]
d1nr2a_ : (LYS25) (LEU68) [view usage] : d.9.1.1 |IL8-like |Interleukin 8-like chemokines |Interleukin 8-like chemokines |Thymus and activation-regulated chemokine, TRAC |Human (Homo sapiens) [TaxId: 9606]
d1f9qb_ : (THR125) (GLU169) [view usage] : d.9.1.1 |IL8-like |Interleukin 8-like chemokines |Interleukin 8-like chemokines |Platelet factor 4, PF4 |Human (Homo sapiens) [TaxId: 9606]
d4ra8a_ : (ALA26) (SER69) [view usage] : d.9.1.1 |IL8-like |Interleukin 8-like chemokines |Interleukin 8-like chemokines |automated matches |Human (Homo sapiens) [TaxId: 9606]
d1bo0a_ : (GLU26) (LYS69) [view usage] : d.9.1.1 |IL8-like |Interleukin 8-like chemokines |Interleukin 8-like chemokines |Monocyte chemoattractant protein-3 (MCP-3) |Human (Homo sapiens) [TaxId: 9606]
d2v1qb_ : (LYS26) (GLU58) [view usage] : b.34.2.0 |SH3-like barrel |SH3-domain |automated matches |automated matches |Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
d1v74a_ : (GLY654) (GLY695) [view usage] : d.243.1.1 |Colicin D/E5 nuclease domain |Colicin D/E5 nuclease domain |Colicin D nuclease domain |Colicin D nuclease domain |Escherichia coli [TaxId: 562]
d1huma_ : (VAL26) (LEU68) [view usage] : d.9.1.1 |IL8-like |Interleukin 8-like chemokines |Interleukin 8-like chemokines |Macrophage inflammatory protein, MIP |Human (Homo sapiens), 1-beta [TaxId: 9606]
d1el0a_ : (CYS27) (LEU66) [view usage] : d.9.1.1 |IL8-like |Interleukin 8-like chemokines |Interleukin 8-like chemokines |CC chemokine I-309 |Human (Homo sapiens) [TaxId: 9606]
d1eiga_ : (SER23) (LYS68) [view usage] : d.9.1.1 |IL8-like |Interleukin 8-like chemokines |Interleukin 8-like chemokines |Eotaxin-2 |Human (Homo sapiens) [TaxId: 9606]
d1o7yd_ : (LYS26) (SER69) [view usage] : d.9.1.1 |IL8-like |Interleukin 8-like chemokines |Interleukin 8-like chemokines |IP-10/CXCL10 |Human (Homo sapiens) [TaxId: 9606]
d1qe6b_ : (LYS23) (SER72) [view usage] : d.9.1.1 |IL8-like |Interleukin 8-like chemokines |Interleukin 8-like chemokines |Interleukin-8, IL-8 |Human (Homo sapiens) [TaxId: 9606]
d1weqa_ : (TYR18) (SER63) [view usage] : g.50.1.2 |FYVE/PHD zinc finger |FYVE/PHD zinc finger |PHD domain |PHD finger protein 7 (NYD-SP6) |Mouse (Mus musculus) [TaxId: 10090]
d1o5el_ : (PRO8) (GLY49) [view usage] : d.170.1.2 |SRCR-like |SRCR-like |Hepsin, N-terminal domain |Hepsin, N-terminal domain |Human (Homo sapiens) [TaxId: 9606]
d2hcca_ : (LYS21) (LYS62) [view usage] : d.9.1.1 |IL8-like |Interleukin 8-like chemokines |Interleukin 8-like chemokines |Chemokine hcc-2 (macrophage inflammatory protein-5) |Human (Homo sapiens) [TaxId: 9606]
d3zvjr_ : (ARG7) (ARG31) [view usage] : c.47.1.0 |Thioredoxin fold |Thioredoxin-like |automated matches |automated matches |Blood fluke (Schistosoma mansoni) [TaxId: 6183]
d2czja1 : (THR42) (VAL93) [view usage] : b.111.1.1 |Small protein B (SmpB) |Small protein B (SmpB) |Small protein B (SmpB) |Small protein B (SmpB) |Thermus thermophilus [TaxId: 274]
d1c0mc1 : (LEU240) (LYS266) [view usage] : b.34.7.1 |SH3-like barrel |DNA-binding domain of retroviral integrase |DNA-binding domain of retroviral integrase |DNA-binding domain of retroviral integrase |Rous sarcoma virus RSV [TaxId: 11886]
d1eota_ : (GLU24) (LYS68) [view usage] : d.9.1.1 |IL8-like |Interleukin 8-like chemokines |Interleukin 8-like chemokines |Eotaxin |Human (Homo sapiens) [TaxId: 9606]
d1o80a_ : (LYS26) (LYS74) [view usage] : d.9.1.1 |IL8-like |Interleukin 8-like chemokines |Interleukin 8-like chemokines |IP-10/CXCL10 |Human (Homo sapiens) [TaxId: 9606]
d1plfb_ : (SER41) (LYS84) [view usage] : d.9.1.1 |IL8-like |Interleukin 8-like chemokines |Interleukin 8-like chemokines |Platelet factor 4, PF4 |Cow (Bos taurus) [TaxId: 9913]
d3izbd_ : (ASP88) (SER120) [view usage] : i.1.1.3 |Ribosome and ribosomal fragments |Ribosome and ribosomal fragments |Small subunit |Eukaryotic, cytoplasmic (40S subunit) |Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
d1u4rc_ : (LYS25) (MET67) [view usage] : d.9.1.1 |IL8-like |Interleukin 8-like chemokines |Interleukin 8-like chemokines |RANTES (regulated upon activation, normal T-cell expressed and secreted) |Human (Homo sapiens) [TaxId: 9606]
d1f9qa_ : (THR25) (SER70) [view usage] : d.9.1.1 |IL8-like |Interleukin 8-like chemokines |Interleukin 8-like chemokines |Platelet factor 4, PF4 |Human (Homo sapiens) [TaxId: 9606]
d1b3aa_ : (LYS25) (MET67) [view usage] : d.9.1.1 |IL8-like |Interleukin 8-like chemokines |Interleukin 8-like chemokines |RANTES (regulated upon activation, normal T-cell expressed and secreted) |Human (Homo sapiens) [TaxId: 9606]
d2vxwc_ : (LYS25) (SER68) [view usage] : d.9.1.1 |IL8-like |Interleukin 8-like chemokines |Interleukin 8-like chemokines |automated matches |Human (Homo sapiens) [TaxId: 9606]
d2r3zb_ : (GLY25) (LEU64) [view usage] : d.9.1.1 |IL8-like |Interleukin 8-like chemokines |Interleukin 8-like chemokines |automated matches |Mouse (Mus musculus) [TaxId: 10090]
d1ss6a_ : (ASP11) (GLY48) [view usage] : d.245.1.1 |NSFL1 (p97 ATPase) cofactor p47, SEP domain |NSFL1 (p97 ATPase) cofactor p47, SEP domain |NSFL1 (p97 ATPase) cofactor p47, SEP domain |NSFL1 (p97 ATPase) cofactor p47, SEP domain |Human (Homo sapiens) [TaxId: 9606]
d2vxwa_ : (LYS25) (SER68) [view usage] : d.9.1.1 |IL8-like |Interleukin 8-like chemokines |Interleukin 8-like chemokines |automated matches |Human (Homo sapiens) [TaxId: 9606]
d2ix1a3 : (VAL25) (VAL54) [view usage] : b.40.4.5 |OB-fold |Nucleic acid-binding proteins |Cold shock DNA-binding domain-like |Exoribonuclease 2, RNB |Escherichia coli [TaxId: 562]
d1wewa_ : (GLU14) (THR72) [view usage] : g.50.1.2 |FYVE/PHD zinc finger |FYVE/PHD zinc finger |PHD domain |Sumoylation ligase E3, SIZ1 |Thale cress (Arabidopsis thaliana) [TaxId: 3702]
d3tn2a_ : (VAL26) (LEU66) [view usage] : d.9.1.1 |IL8-like |Interleukin 8-like chemokines |Interleukin 8-like chemokines |automated matches |Human (Homo sapiens) [TaxId: 9606]
d4dpgb1 : (HIS133) (LYS175) [view usage] : b.40.4.0 |OB-fold |Nucleic acid-binding proteins |automated matches |automated matches |Human (Homo sapiens) [TaxId: 9606]
d2r3zc_ : (GLY25) (MET65) [view usage] : d.9.1.1 |IL8-like |Interleukin 8-like chemokines |Interleukin 8-like chemokines |automated matches |Mouse (Mus musculus) [TaxId: 10090]
d1u4rb_ : (LYS25) (MET67) [view usage] : d.9.1.1 |IL8-like |Interleukin 8-like chemokines |Interleukin 8-like chemokines |RANTES (regulated upon activation, normal T-cell expressed and secreted) |Human (Homo sapiens) [TaxId: 9606]
d1hfga_ : (SER27) (GLN65) [view usage] : d.9.1.1 |IL8-like |Interleukin 8-like chemokines |Interleukin 8-like chemokines |Macrophage inflammatory protein, MIP |Kaposi's sarcoma-associated herpesvirus, VMIP-II [TaxId: 37296]
d2cmzb_ : (GLY216) (ALA248) [view usage] : e.76.1.2 |Viral glycoprotein ectodomain-like |Viral glycoprotein ectodomain-like |Spike glycoprotein-like |automated matches |Vesicular stomatitis indiana virus [TaxId: 11277]
d1a62a2 : (ASP48) (SER70) [view usage] : b.40.4.5 |OB-fold |Nucleic acid-binding proteins |Cold shock DNA-binding domain-like |Rho termination factor, RNA-binding domain |Escherichia coli [TaxId: 562]
d4imha_ : (ALA300) (SER350) [view usage] : e.62.1.0 |Heme iron utilization protein-like |Heme iron utilization protein-like |automated matches |automated matches |Pseudomonas aeruginosa [TaxId: 287]
d2vxwd_ : (LYS25) (GLU66) [view usage] : d.9.1.1 |IL8-like |Interleukin 8-like chemokines |Interleukin 8-like chemokines |automated matches |Human (Homo sapiens) [TaxId: 9606]
d1c0ma1 : (LEU240) (LYS266) [view usage] : b.34.7.1 |SH3-like barrel |DNA-binding domain of retroviral integrase |DNA-binding domain of retroviral integrase |DNA-binding domain of retroviral integrase |Rous sarcoma virus RSV [TaxId: 11886]
d4ra8d_ : (ALA26) (SER69) [view usage] : d.9.1.1 |IL8-like |Interleukin 8-like chemokines |Interleukin 8-like chemokines |automated matches |Human (Homo sapiens) [TaxId: 9606]
List of distinct SCOP folds where this concept is used (in one or more of its domains):
i.1, b.40, c.47, c.60, e.62, b.34, a.4, d.63, d.9, e.76, g.50, b.111, d.170, d.245, d.243