Tableau information
Concept source: d3w4oa_ amino acid (a.a.) range (ASP228)(ALA291)
nSSEs in this Concept: 4
String of secondary struct.elems. (SSEs) defining this concept: EEEH
Each SSE's a.a.range: (start resi) (end resi) SSEtype (H=Helix; E=Strand) followed by a numeric SSE ID:
(ASP228) (GLY238) E1
(GLY242) (PRO254) E2
(ALA257) (ASN269) E3
(ASP277) (ALA291) H4
Orientation angles° of SSE-pairs; those in contact shown in bold font
E1
E2 163.4° E2
E3 -26.3° 170.3° E3
H4 146.9° -30.4° 147.0°
Footnote: Inferred from this concept's usages (listed below) was the angular variance of 1σ = ±6.9° about each orientation angle shown above.
Loci of concept usages (shown as a range of a.a. residue ids) in SCOP(v2.05) domains, along with their brief legend taken from SCOP
d1ozbe_ : (LYS44) (LEU107) [view usage] : d.33.1.1 |SecB-like |SecB-like |Bacterial protein-export protein SecB |Bacterial protein-export protein SecB |Haemophilus influenzae [TaxId: 727]
d3bidb_ : (TYR2) (SER46) [view usage] : d.348.1.1 |YegP-like |YegP-like |YegP-like |Uncharacterized protein NMB1088 |Neisseria meningitidis [TaxId: 487]
d2rqla_ : (GLN36) (GLN94) [view usage] : d.204.1.0 |Ribosome binding protein Y (YfiA homologue) |Ribosome binding protein Y (YfiA homologue) |automated matches |automated matches |Escherichia coli [TaxId: 562]
d3djca1 : (LEU1) (ASN50) [view usage] : c.55.1.0 |Ribonuclease H-like motif |Actin-like ATPase domain |automated matches |automated matches |Legionella pneumophila [TaxId: 272624]
d3tqmb_ : (SER35) (LYS92) [view usage] : d.204.1.0 |Ribosome binding protein Y (YfiA homologue) |Ribosome binding protein Y (YfiA homologue) |automated matches |automated matches |Coxiella burnetii [TaxId: 777]
d1iwoa3 : (MET361) (ASP422) [view usage] : d.220.1.1 |Metal cation-transporting ATPase, ATP-binding domain N |Metal cation-transporting ATPase, ATP-binding domain N |Metal cation-transporting ATPase, ATP-binding domain N |Calcium ATPase |Rabbit (Oryctolagus cuniculus) [TaxId: 9986]
d3n84a_ : (ALA82) (ARG136) [view usage] : d.93.1.1 |SH2-like |SH2 domain |SH2 domain |Growth factor receptor-bound protein 2 (GRB2) |Human (Homo sapiens) [TaxId: 9606]
d1es3a_ : (GLY208) (LEU262) [view usage] : e.3.1.1 |beta-lactamase/transpeptidase-like |beta-lactamase/transpeptidase-like |beta-Lactamase/D-ala carboxypeptidase |D-ala carboxypeptidase/transpeptidase |Streptomyces sp., K15 [TaxId: 1931]
d1onih_ : (SER2) (ALA69) [view usage] : d.79.1.1 |Bacillus chorismate mutase-like |YjgF-like |YjgF/L-PSP |14.5 kda translational inhibitor protein, L-PSP |Human (Homo sapiens) [TaxId: 9606]
d1crza2 : (ASP76) (PHE132) [view usage] : c.51.2.1 |Anticodon-binding domain-like |TolB, N-terminal domain |TolB, N-terminal domain |TolB, N-terminal domain |Escherichia coli [TaxId: 562]
d1yf5l2 : (SER2) (ILE44) [view usage] : c.55.1.11 |Ribonuclease H-like motif |Actin-like ATPase domain |Cyto-EpsL domain |Cytoplasmic domain of general secretion pathway protein L, EpsL |Vibrio cholerae [TaxId: 666]
d3tqma_ : (SER35) (LYS91) [view usage] : d.204.1.0 |Ribosome binding protein Y (YfiA homologue) |Ribosome binding protein Y (YfiA homologue) |automated matches |automated matches |Coxiella burnetii [TaxId: 777]
d3bide_ : (TYR2) (SER46) [view usage] : d.348.1.1 |YegP-like |YegP-like |YegP-like |Uncharacterized protein NMB1088 |Neisseria meningitidis [TaxId: 487]
d1acfa_ : (ARG75) (GLY124) [view usage] : d.110.1.1 |Profilin-like |Profilin (actin-binding protein) |Profilin (actin-binding protein) |Profilin (actin-binding protein) |Acanthamoeba castellanii [TaxId: 5755]
d4jf4b_ : (GLY210) (ASN271) [view usage] : e.3.1.0 |beta-lactamase/transpeptidase-like |beta-lactamase/transpeptidase-like |automated matches |automated matches |Acinetobacter baumannii [TaxId: 470]
d1g5ua_ : (VAL1082) (GLY1130) [view usage] : d.110.1.1 |Profilin-like |Profilin (actin-binding protein) |Profilin (actin-binding protein) |Profilin (actin-binding protein) |Rubber tree (Hevea brasiliensis), hevb8 [TaxId: 3981]
d2bh1a2 : (SER2) (ILE44) [view usage] : c.55.1.11 |Ribonuclease H-like motif |Actin-like ATPase domain |Cyto-EpsL domain |automated matches |Vibrio cholerae [TaxId: 666]
d3cnwb_ : (ARG70) (LEU141) [view usage] : d.129.3.8 |TBP-like |Bet v1-like |Atu1531-like |Uncharacterized protein XoxI |Bacillus cereus [TaxId: 1396]
d1kgga_ : (TYR229) (LYS288) [view usage] : e.3.1.1 |beta-lactamase/transpeptidase-like |beta-lactamase/transpeptidase-like |beta-Lactamase/D-ala carboxypeptidase |beta-Lactamase, class A |Staphylococcus aureus [TaxId: 1280]
d2k49a2 : (TRP4) (GLU53) [view usage] : d.348.1.1 |YegP-like |YegP-like |YegP-like |Uncharacterized protein SO3888 |Shewanella oneidensis [TaxId: 70863]
d1imua_ : (SER36) (HIS90) [view usage] : d.204.1.1 |Ribosome binding protein Y (YfiA homologue) |Ribosome binding protein Y (YfiA homologue) |Ribosome binding protein Y (YfiA homologue) |Ribosome binding protein Y (YfiA homologue) |Haemophilus influenzae [TaxId: 727]
d2jmua1 : (THR123) (LEU182) [view usage] : d.63.1.2 |CYTH-like phosphatases |CYTH-like phosphatases |CYTH domain |Thiamine-triphosphatase (ThTPase) |Mouse (Mus musculus) [TaxId: 10090]
d2c4ea_ : (ASP209) (GLY260) [view usage] : c.72.1.0 |Ribokinase-like |Ribokinase-like |automated matches |automated matches |Methanococcus jannaschii [TaxId: 2190]
d1qh3a_ : (MET1) (GLY44) [view usage] : d.157.1.2 |Metallo-hydrolase/oxidoreductase |Metallo-hydrolase/oxidoreductase |Glyoxalase II (hydroxyacylglutathione hydrolase) |Glyoxalase II (hydroxyacylglutathione hydrolase) |Human (Homo sapiens) [TaxId: 9606]
d1j3bb2 : (GLY151) (GLY211) [view usage] : c.109.1.1 |PEP carboxykinase N-terminal domain |PEP carboxykinase N-terminal domain |PEP carboxykinase N-terminal domain |Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxaloacetate carboxy-lyase) |Thermus thermophilus [TaxId: 274]
d1qabe_ : (ASP102) (CYS160) [view usage] : b.60.1.1 |Lipocalins |Lipocalins |Retinol binding protein-like |Retinol binding protein |Human (Homo sapiens) [TaxId: 9606]
d3f08a_ : (ARG68) (ASP138) [view usage] : d.129.3.8 |TBP-like |Bet v1-like |Atu1531-like |automated matches |Bacillus thuringiensis [TaxId: 180856]
d2f1na1 : (GLU108) (SER159) [view usage] : d.151.1.1 |DNase I-like |DNase I-like |DNase I-like |Cytolethal distending toxin subunit B |Escherichia coli [TaxId: 562]
d1nq3c_ : (SER2) (GLY70) [view usage] : d.79.1.1 |Bacillus chorismate mutase-like |YjgF-like |YjgF/L-PSP |14.5 kda translational inhibitor protein, L-PSP |Goat (Capra hircus) [TaxId: 9925]
d4heia_ : (HIS36) (LEU92) [view usage] : d.204.1.0 |Ribosome binding protein Y (YfiA homologue) |Ribosome binding protein Y (YfiA homologue) |automated matches |automated matches |Vibrio cholerae [TaxId: 243277]
d2c5wb1 : (GLN576) (LEU625) [view usage] : e.3.1.1 |beta-lactamase/transpeptidase-like |beta-lactamase/transpeptidase-like |beta-Lactamase/D-ala carboxypeptidase |Penicillin-binding protein 1a, transpeptidase domain |Pneumococcus (Streptococcus pneumoniae) [TaxId: 1313]
d4pwzb1 : (ASP97) (VAL152) [view usage] : c.51.2.0 |Anticodon-binding domain-like |TolB, N-terminal domain |automated matches |automated matches |Yersinia pestis [TaxId: 214092]
d3bidc_ : (TYR2) (SER46) [view usage] : d.348.1.1 |YegP-like |YegP-like |YegP-like |Uncharacterized protein NMB1088 |Neisseria meningitidis [TaxId: 487]
d2le1a_ : (ARG73) (LEU144) [view usage] : d.129.3.0 |TBP-like |Bet v1-like |automated matches |automated matches |Thermobifida fusca [TaxId: 269800]
d4espa_ : (THR81) (GLY130) [view usage] : d.110.1.1 |Profilin-like |Profilin (actin-binding protein) |Profilin (actin-binding protein) |automated matches |Peanut (Arachis hypogaea) [TaxId: 3818]
d3qhya_ : (TRP229) (ARG291) [view usage] : e.3.1.1 |beta-lactamase/transpeptidase-like |beta-lactamase/transpeptidase-like |beta-Lactamase/D-ala carboxypeptidase |automated matches |Anthrax bacillus (Bacillus anthracis) [TaxId: 1392]
d2hqsa2 : (ASP98) (VAL153) [view usage] : c.51.2.1 |Anticodon-binding domain-like |TolB, N-terminal domain |TolB, N-terminal domain |TolB, N-terminal domain |Escherichia coli [TaxId: 562]
d1a0ka_ : (VAL82) (SER129) [view usage] : d.110.1.1 |Profilin-like |Profilin (actin-binding protein) |Profilin (actin-binding protein) |Profilin (actin-binding protein) |Thale cress (Arabidopsis thaliana) [TaxId: 3702]
d1zbsa2 : (MSE1) (ILE53) [view usage] : c.55.1.5 |Ribonuclease H-like motif |Actin-like ATPase domain |BadF/BadG/BcrA/BcrD-like |Hypothetical protein PG1100 |Porphyromonas gingivalis [TaxId: 837]
d1hp4a2 : (ILE80) (LEU124) [view usage] : d.92.2.1 |Zincin-like |beta-N-acetylhexosaminidase-like domain |beta-N-acetylhexosaminidase domain |beta-N-acetylhexosaminidase, N-terminal domain |Streptomyces plicatus [TaxId: 1922]
d2vk3a_ : (CYS83) (GLY138) [view usage] : d.110.1.1 |Profilin-like |Profilin (actin-binding protein) |Profilin (actin-binding protein) |automated matches |Norway rat (Rattus norvegicus) [TaxId: 10116]
d1wj1a_ : (SER93) (GLN148) [view usage] : b.55.1.2 |PH domain-like barrel |PH domain-like |Phosphotyrosine-binding domain (PTB) |Numb |Mouse (Mus musculus) [TaxId: 10090]
d3iaxa1 : (ASP97) (PHE153) [view usage] : c.51.2.0 |Anticodon-binding domain-like |TolB, N-terminal domain |automated matches |automated matches |Escherichia coli [TaxId: 562]
d2k8ea1 : (TRP20) (SER64) [view usage] : d.348.1.1 |YegP-like |YegP-like |YegP-like |Uncharacterized protein YegP |Escherichia coli [TaxId: 562]
d1bb8a_ : (GLY16) (ASP73) [view usage] : d.10.1.1 |DNA-binding domain |DNA-binding domain |DNA-binding domain from tn916 integrase |DNA-binding domain from tn916 integrase |Enterococcus faecalis [TaxId: 1351]
d4heib_ : (HIS36) (LYS91) [view usage] : d.204.1.0 |Ribosome binding protein Y (YfiA homologue) |Ribosome binding protein Y (YfiA homologue) |automated matches |automated matches |Vibrio cholerae [TaxId: 243277]
d3nula_ : (VAL82) (GLU130) [view usage] : d.110.1.1 |Profilin-like |Profilin (actin-binding protein) |Profilin (actin-binding protein) |Profilin (actin-binding protein) |Thale cress (Arabidopsis thaliana) [TaxId: 3702]
d2ch5b2 : (ALA2) (GLY61) [view usage] : c.55.1.5 |Ribonuclease H-like motif |Actin-like ATPase domain |BadF/BadG/BcrA/BcrD-like |N-acetylglucosamine kinase, NAGK |Human (Homo sapiens) [TaxId: 9606]
d1qk9a_ : (GLY27) (VAL69) [view usage] : d.10.1.3 |DNA-binding domain |DNA-binding domain |Methyl-CpG-binding domain, MBD |Methyl-CpG-binding protein 2, MECP2 |Human (Homo sapiens) [TaxId: 9606]
d1asta_ : (TYR54) (GLY99) [view usage] : d.92.1.8 |Zincin-like |Metalloproteases ("zincins"), catalytic domain |Astacin |Astacin |European fresh water crayfish (Astacus astacus) [TaxId: 6715]
d1mgta2 : (MET1) (GLY51) [view usage] : c.55.7.1 |Ribonuclease H-like motif |Methylated DNA-protein cysteine methyltransferase domain |Methylated DNA-protein cysteine methyltransferase domain |O6-alkylguanine-DNA alkyltransferase |Pyrococcus kodakaraensis [TaxId: 311400]
d1usvf_ : (LYS62) (PHE142) [view usage] : d.83.2.1 |Aha1/BPI domain-like |Activator of Hsp90 ATPase, Aha1 |Activator of Hsp90 ATPase, Aha1 |Activator of Hsp90 ATPase, Aha1 |Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
d4k89a_ : (LYS99) (ASN150) [view usage] : d.92.1.2 |Zincin-like |Metalloproteases ("zincins"), catalytic domain |Thermolysin-like |Elastase |Pseudomonas aeruginosa [TaxId: 287]
d1amya1 : (LYS351) (LEU383) [view usage] : b.71.1.1 |Glycosyl hydrolase domain |Glycosyl hydrolase domain |alpha-Amylases, C-terminal beta-sheet domain |Plant alpha-amylase |Barley (Hordeum vulgare), seeds, AMY2 isozyme [TaxId: 4513]
d3cera1 : (GLU14) (PRO86) [view usage] : c.55.1.0 |Ribonuclease H-like motif |Actin-like ATPase domain |automated matches |automated matches |Bifidobacterium longum [TaxId: 206672]
d2ywja_ : (ASP140) (LYS185) [view usage] : c.23.16.0 |Flavodoxin-like |Class I glutamine amidotransferase-like |automated matches |automated matches |Methanocaldococcus jannaschii [TaxId: 243232]
d1sfea2 : (ALA13) (PRO56) [view usage] : c.55.7.1 |Ribonuclease H-like motif |Methylated DNA-protein cysteine methyltransferase domain |Methylated DNA-protein cysteine methyltransferase domain |Ada DNA repair protein |Escherichia coli [TaxId: 562]
d3cnwa1 : (ARG70) (ASP140) [view usage] : d.129.3.8 |TBP-like |Bet v1-like |Atu1531-like |Uncharacterized protein XoxI |Bacillus cereus [TaxId: 1396]
d2h3gx1 : (MET1) (GLY51) [view usage] : c.55.1.0 |Ribonuclease H-like motif |Actin-like ATPase domain |automated matches |automated matches |Bacillus anthracis [TaxId: 198094]
d2oi0a_ : (LEU334) (GLY412) [view usage] : d.92.1.10 |Zincin-like |Metalloproteases ("zincins"), catalytic domain |TNF-alpha converting enzyme, TACE, catalytic domain |automated matches |Human (Homo sapiens) [TaxId: 9606]
d1skfa_ : (GLY208) (LEU262) [view usage] : e.3.1.1 |beta-lactamase/transpeptidase-like |beta-lactamase/transpeptidase-like |beta-Lactamase/D-ala carboxypeptidase |D-ala carboxypeptidase/transpeptidase |Streptomyces sp., K15 [TaxId: 1931]
d1k0ka_ : (ARG75) (GLN124) [view usage] : d.110.1.1 |Profilin-like |Profilin (actin-binding protein) |Profilin (actin-binding protein) |Profilin (actin-binding protein) |Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
d2hv2b2 : (SER195) (SER245) [view usage] : d.108.1.10 |Acyl-CoA N-acyltransferases (Nat) |Acyl-CoA N-acyltransferases (Nat) |EF1021-like |Hypothetical protein EF1021 |Enterococcus faecalis [TaxId: 1351]
d1ii2a2 : (ASP140) (PHE193) [view usage] : c.109.1.1 |PEP carboxykinase N-terminal domain |PEP carboxykinase N-terminal domain |PEP carboxykinase N-terminal domain |Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxaloacetate carboxy-lyase) |Trypanosoma cruzi [TaxId: 5693]
d1xkvb2 : (GLY151) (GLY211) [view usage] : c.109.1.1 |PEP carboxykinase N-terminal domain |PEP carboxykinase N-terminal domain |PEP carboxykinase N-terminal domain |Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxaloacetate carboxy-lyase) |Thermus thermophilus [TaxId: 274]
d2v8ca_ : (CYS83) (GLY138) [view usage] : d.110.1.1 |Profilin-like |Profilin (actin-binding protein) |Profilin (actin-binding protein) |automated matches |Mouse (Mus musculus) [TaxId: 10090]
d1zc6b1 : (ARG11) (GLY68) [view usage] : c.55.1.5 |Ribonuclease H-like motif |Actin-like ATPase domain |BadF/BadG/BcrA/BcrD-like |Probable N-acetylglucosamine kinase CV2896 |Chromobacterium violaceum [TaxId: 536]
d4jf4a_ : (TYR211) (ASN271) [view usage] : e.3.1.0 |beta-lactamase/transpeptidase-like |beta-lactamase/transpeptidase-like |automated matches |automated matches |Acinetobacter baumannii [TaxId: 470]
d3djcb1 : (ILE2) (ASN50) [view usage] : c.55.1.0 |Ribonuclease H-like motif |Actin-like ATPase domain |automated matches |automated matches |Legionella pneumophila [TaxId: 272624]
d1yptb_ : (SER310) (GLY387) [view usage] : c.45.1.2 |(Phosphotyrosine protein) phosphatases II |(Phosphotyrosine protein) phosphatases II |Higher-molecular-weight phosphotyrosine protein phosphatases |Protein-tyrosine phosphatase YopH, catalytic domain |Yersinia enterocolitica [TaxId: 630]
d1qy3a_ : (PRO13) (SER72) [view usage] : d.22.1.1 |GFP-like |GFP-like |Fluorescent proteins |Green fluorescent protein, GFP |Jellyfish (Aequorea victoria) [TaxId: 6100]
d1ozbb_ : (LYS44) (LEU107) [view usage] : d.33.1.1 |SecB-like |SecB-like |Bacterial protein-export protein SecB |Bacterial protein-export protein SecB |Haemophilus influenzae [TaxId: 727]
d1prqa_ : (SER76) (GLY124) [view usage] : d.110.1.1 |Profilin-like |Profilin (actin-binding protein) |Profilin (actin-binding protein) |Profilin (actin-binding protein) |Acanthamoeba castellanii [TaxId: 5755]
d2aj6a1 : (ASN52) (ASN111) [view usage] : d.108.1.1 |Acyl-CoA N-acyltransferases (Nat) |Acyl-CoA N-acyltransferases (Nat) |N-acetyl transferase, NAT |Hypothetical protein MW0638 |Staphylococcus aureus [TaxId: 1280]
d4af1a2 : (GLY149) (LEU214) [view usage] : c.55.4.0 |Ribonuclease H-like motif |Translational machinery components |automated matches |automated matches |Halobacterium salinarum [TaxId: 478009]
d3f08b_ : (ARG68) (LEU137) [view usage] : d.129.3.8 |TBP-like |Bet v1-like |Atu1531-like |automated matches |Bacillus thuringiensis [TaxId: 180856]
d2ba0a1 : (ARG66) (LEU103) [view usage] : b.40.4.5 |OB-fold |Nucleic acid-binding proteins |Cold shock DNA-binding domain-like |S1-domain of exosome complex RNA-binding protein 1, ECR1 |Archaeoglobus fulgidus [TaxId: 2234]
d3tqmc_ : (SER35) (LYS91) [view usage] : d.204.1.0 |Ribosome binding protein Y (YfiA homologue) |Ribosome binding protein Y (YfiA homologue) |automated matches |automated matches |Coxiella burnetii [TaxId: 777]
d4ibxa_ : (TRP229) (TRP290) [view usage] : e.3.1.1 |beta-lactamase/transpeptidase-like |beta-lactamase/transpeptidase-like |beta-Lactamase/D-ala carboxypeptidase |beta-Lactamase, class A |Escherichia coli, TEM-1 [TaxId: 562]
d1ezma_ : (LYS99) (ASN150) [view usage] : d.92.1.2 |Zincin-like |Metalloproteases ("zincins"), catalytic domain |Thermolysin-like |Elastase |Pseudomonas aeruginosa [TaxId: 287]
d2j4ra1 : (PRO7) (TYR70) [view usage] : c.55.1.8 |Ribonuclease H-like motif |Actin-like ATPase domain |Ppx/GppA phosphatase |automated matches |Aquifex aeolicus [TaxId: 63363]
d1j3wb_ : (GLN83) (ALA136) [view usage] : d.110.7.1 |Profilin-like |Roadblock/LC7 domain |Roadblock/LC7 domain |Giding protein MglB |Thermus thermophilus [TaxId: 274]
d4db3a1 : (ASN-1) (PHE54) [view usage] : c.55.1.0 |Ribonuclease H-like motif |Actin-like ATPase domain |automated matches |automated matches |Vibrio vulnificus [TaxId: 672]
d1es5a_ : (GLY208) (LEU262) [view usage] : e.3.1.1 |beta-lactamase/transpeptidase-like |beta-lactamase/transpeptidase-like |beta-Lactamase/D-ala carboxypeptidase |D-ala carboxypeptidase/transpeptidase |Streptomyces sp., K15 [TaxId: 1931]
d2ljha_ : (GLU81) (PHE125) [view usage] : d.50.1.0 |dsRBD-like |dsRNA-binding domain-like |automated matches |automated matches |Fruit fly (Drosophila melanogaster) [TaxId: 7227]
d1t6da1 : (ILE8) (LYS78) [view usage] : c.55.1.8 |Ribonuclease H-like motif |Actin-like ATPase domain |Ppx/GppA phosphatase |Exopolyphosphatase Ppx |Aquifex aeolicus [TaxId: 63363]
List of distinct SCOP folds where this concept is used (in one or more of its domains):
e.3, d.157, d.92, c.45, d.129, c.72, c.23, b.40, c.55, d.151, b.60, d.108, d.110, c.109, c.51, b.55, d.79, d.63, d.93, b.71,
d.33, d.50, d.83, d.204, d.22, d.220, d.10, d.348