Tableau information
Concept source: d1nzra_ amino acid (a.a.) range (ASN18)(SER66)
nSSEs in this Concept: 4
String of secondary struct.elems. (SSEs) defining this concept: EEEH
Each SSE's a.a.range: (start resi) (end resi) SSEtype (H=Helix; E=Strand) followed by a numeric SSE ID:
(ASN18) (ASP23) E1
(PHE29) (HIS35) E2
(MET44) (THR52) E3
(THR52) (SER66) H4
Orientation angles° of SSE-pairs; those in contact shown in bold font
E1
E2 155.2° E2
E3 -44.4° 160.3° E3
H4 125.3° -40.1° 142.4°
Footnote: Inferred from this concept's usages (listed below) was the angular variance of 1σ = ±9.5° about each orientation angle shown above.
Loci of concept usages (shown as a range of a.a. residue ids) in SCOP(v2.05) domains, along with their brief legend taken from SCOP
d1vlad_ : (MSE1) (CYS49) [view usage] : d.227.1.2 |OsmC-like |OsmC-like |YhfA-like |Hypothetical protein TM0919 |Thermotoga maritima [TaxId: 2336]
d2onfb_ : (HIS2) (MSE65) [view usage] : d.227.1.1 |OsmC-like |OsmC-like |Ohr/OsmC resistance proteins |Hypothetical protein Ta0195 |Thermoplasma acidophilum [TaxId: 2303]
d3b83b_ : (LEU1) (GLU44) [view usage] : b.1.2.0 |Immunoglobulin-like beta-sandwich |Fibronectin type III |automated matches |automated matches |Human (Homo sapiens) [TaxId: 9606]
d1fzbf1 : (ALA341) (ILE394) [view usage] : d.171.1.1 |Fibrinogen C-terminal domain-like |Fibrinogen C-terminal domain-like |Fibrinogen C-terminal domain-like |Fibrinogen C-terminal domains |Human (Homo sapiens), gamma [TaxId: 9606]
d1ar1b1 : (GLY197) (ALA251) [view usage] : b.6.1.2 |Cupredoxin-like |Cupredoxins |Periplasmic domain of cytochrome c oxidase subunit II |Cytochrome c oxidase |Paracoccus denitrificans [TaxId: 266]
d2cayb1 : (SER29) (SER66) [view usage] : b.55.1.12 |PH domain-like barrel |PH domain-like |VPS36 N-terminal domain-like |Vacuolar protein sorting protein 36, VPS36 |Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
d2gsmb1 : (GLY233) (GLN281) [view usage] : b.6.1.2 |Cupredoxin-like |Cupredoxins |Periplasmic domain of cytochrome c oxidase subunit II |Cytochrome c oxidase |Rhodobacter sphaeroides [TaxId: 1063]
d3ehbb1 : (GLY197) (ALA251) [view usage] : b.6.1.2 |Cupredoxin-like |Cupredoxins |Periplasmic domain of cytochrome c oxidase subunit II |Cytochrome c oxidase |Paracoccus denitrificans [TaxId: 266]
d2p88a1 : (THR4) (GLY56) [view usage] : d.54.1.0 |Enolase N-terminal domain-like |Enolase N-terminal domain-like |automated matches |automated matches |Bacillus cereus [TaxId: 226900]
d1ckja_ : (ILE18) (GLN63) [view usage] : d.144.1.7 |Protein kinase-like (PK-like) |Protein kinase-like (PK-like) |Protein kinases, catalytic subunit |Casein kinase-1, CK1 |Norway rat (Rattus norvegicus) [TaxId: 10116]
d1cyxa_ : (MET189) (GLN240) [view usage] : b.6.1.2 |Cupredoxin-like |Cupredoxins |Periplasmic domain of cytochrome c oxidase subunit II |Quinol oxidase (CyoA) |Escherichia coli [TaxId: 562]
d2voua2 : (PHE193) (MET237) [view usage] : d.16.1.2 |FAD-linked reductases, C-terminal domain |FAD-linked reductases, C-terminal domain |PHBH-like |Dihydroxypyridine hydroxylase DhpH |Arthrobacter nicotinovorans [TaxId: 29320]
d4a3ua_ : (GLY112) (ALA158) [view usage] : c.1.4.0 |TIM beta/alpha-barrel |FMN-linked oxidoreductases |automated matches |automated matches |Zymomonas mobilis [TaxId: 542]
d4jgha1 : (LEU81) (PHE119) [view usage] : d.93.1.1 |SH2-like |SH2 domain |SH2 domain |automated matches |Human (Homo sapiens) [TaxId: 9606]
d2c4ga_ : (ILE10) (ARG50) [view usage] : d.144.1.7 |Protein kinase-like (PK-like) |Protein kinase-like (PK-like) |Protein kinases, catalytic subunit |automated matches |Human (Homo sapiens) [TaxId: 9606]
d1h3ga1 : (GLU7) (GLU36) [view usage] : b.1.18.2 |Immunoglobulin-like beta-sandwich |E set domains |E-set domains of sugar-utilizing enzymes |Cyclomaltodextrinase, N-terminal domain |Flavobacterium sp. 92 [TaxId: 197856]
d1occb1 : (GLY177) (LEU227) [view usage] : b.6.1.2 |Cupredoxin-like |Cupredoxins |Periplasmic domain of cytochrome c oxidase subunit II |Cytochrome c oxidase |Cow (Bos taurus) [TaxId: 9913]
d2fgra_ : (ILE132) (ARG170) [view usage] : f.4.3.1 |Transmembrane beta-barrels |Porins |Porin |automated matches |Delftia acidovorans [TaxId: 80866]
d1vlab_ : (HIS-1) (CYS49) [view usage] : d.227.1.2 |OsmC-like |OsmC-like |YhfA-like |Hypothetical protein TM0919 |Thermotoga maritima [TaxId: 2336]
d2a45h_ : (GLU56) (GLU105) [view usage] : h.1.8.1 |Parallel coiled-coil |Fibrinogen coiled-coil and central regions |Fibrinogen coiled-coil and central regions |Fibrinogen beta chain |Human (Homo sapiens) [TaxId: 9606]
d1gfoa_ : (GLY8) (THR77) [view usage] : f.4.3.1 |Transmembrane beta-barrels |Porins |Porin |Porin |Escherichia coli, different sequences [TaxId: 562]
d2ywca1 : (GLY136) (GLY185) [view usage] : c.23.16.1 |Flavodoxin-like |Class I glutamine amidotransferase-like |Class I glutamine amidotransferases (GAT) |GMP synthetase |Thermus thermophilus HB8 [TaxId: 300852]
d3rmtc_ : (GLY138) (LEU182) [view usage] : d.68.2.0 |IF3-like |EPT/RTPC-like |automated matches |automated matches |Bacillus halodurans [TaxId: 86665]
d1vlac_ : (HIS-1) (CYS49) [view usage] : d.227.1.2 |OsmC-like |OsmC-like |YhfA-like |Hypothetical protein TM0919 |Thermotoga maritima [TaxId: 2336]
d2jioa2 : (GLU6) (LEU53) [view usage] : c.81.1.1 |Formate dehydrogenase/DMSO reductase, domains 1-3 |Formate dehydrogenase/DMSO reductase, domains 1-3 |Formate dehydrogenase/DMSO reductase, domains 1-3 |automated matches |Desulfovibrio desulfuricans [TaxId: 876]
d1csna_ : (ILE18) (LEU62) [view usage] : d.144.1.7 |Protein kinase-like (PK-like) |Protein kinase-like (PK-like) |Protein kinases, catalytic subunit |Casein kinase-1, CK1 |Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]
d1vh2a_ : (GLU8) (LEU62) [view usage] : d.185.1.2 |LuxS/MPP-like metallohydrolase |LuxS/MPP-like metallohydrolase |Autoinducer-2 production protein LuxS |Autoinducer-2 production protein LuxS |Deinococcus radiodurans [TaxId: 1299]
d3dtub1 : (GLY233) (GLN281) [view usage] : b.6.1.2 |Cupredoxin-like |Cupredoxins |Periplasmic domain of cytochrome c oxidase subunit II |Cytochrome c oxidase |Rhodobacter sphaeroides [TaxId: 1063]
d1ln1a_ : (ALA28) (ASP74) [view usage] : d.129.3.2 |TBP-like |Bet v1-like |STAR domain |Phosphatidylcholine transfer protein |Human (Homo sapiens) [TaxId: 9606]
d3kt9a_ : (VAL4) (GLN46) [view usage] : b.26.1.0 |SMAD/FHA domain |SMAD/FHA domain |automated matches |automated matches |Human (Homo sapiens) [TaxId: 9606]
d2bk0a1 : (LEU79) (ASN154) [view usage] : d.129.3.1 |TBP-like |Bet v1-like |Pathogenesis-related protein 10 (PR10)-like |Major allergen api g 1 |Celery (Apium graveolens) [TaxId: 4045]
d1hxta_ : (GLY8) (THR77) [view usage] : f.4.3.1 |Transmembrane beta-barrels |Porins |Porin |Porin |Escherichia coli, different sequences [TaxId: 562]
d2d7ja_ : (LYS138) (GLU188) [view usage] : c.23.16.1 |Flavodoxin-like |Class I glutamine amidotransferase-like |Class I glutamine amidotransferases (GAT) |automated matches |Pyrococcus horikoshii [TaxId: 70601]
d1vywa_ : (ILE10) (ARG50) [view usage] : d.144.1.7 |Protein kinase-like (PK-like) |Protein kinase-like (PK-like) |Protein kinases, catalytic subunit |Cyclin-dependent PK, CDK2 |Human (Homo sapiens) [TaxId: 9606]
d3q4ta_ : (MET0) (LEU238) [view usage] : d.144.1.0 |Protein kinase-like (PK-like) |Protein kinase-like (PK-like) |automated matches |automated matches |Human (Homo sapiens) [TaxId: 9606]
d2pn2a1 : (SER4) (GLU66) [view usage] : d.227.1.1 |OsmC-like |OsmC-like |Ohr/OsmC resistance proteins |Uncharacterized protein Psyc0566 |Psychrobacter arcticus 273-4 [TaxId: 259536]
d1ds5a_ : (VAL45) (GLU81) [view usage] : d.144.1.7 |Protein kinase-like (PK-like) |Protein kinase-like (PK-like) |Protein kinases, catalytic subunit |Protein kinase CK2, alpha subunit |Maize (Zea mays) [TaxId: 4577]
d1vywc_ : (ILE10) (GLU51) [view usage] : d.144.1.7 |Protein kinase-like (PK-like) |Protein kinase-like (PK-like) |Protein kinases, catalytic subunit |Cyclin-dependent PK, CDK2 |Human (Homo sapiens) [TaxId: 9606]
d3neaa_ : (ASN37) (SER72) [view usage] : c.56.3.0 |Phosphorylase/hydrolase-like |Peptidyl-tRNA hydrolase-like |automated matches |automated matches |Francisella tularensis [TaxId: 119856]
d2ptha_ : (ARG35) (SER70) [view usage] : c.56.3.1 |Phosphorylase/hydrolase-like |Peptidyl-tRNA hydrolase-like |Peptidyl-tRNA hydrolase-like |Peptidyl-tRNA hydrolase |Escherichia coli [TaxId: 562]
d1yj5c1 : (SER6) (GLU52) [view usage] : b.26.1.2 |SMAD/FHA domain |SMAD/FHA domain |FHA domain |Polynucleotide kinase 3'-phosphatase |Mouse (Mus musculus) [TaxId: 10090]
d2v3va2 : (GLU6) (LEU53) [view usage] : c.81.1.1 |Formate dehydrogenase/DMSO reductase, domains 1-3 |Formate dehydrogenase/DMSO reductase, domains 1-3 |Formate dehydrogenase/DMSO reductase, domains 1-3 |automated matches |Desulfovibrio desulfuricans [TaxId: 876]
d1ln2a_ : (ASP29) (ASP74) [view usage] : d.129.3.2 |TBP-like |Bet v1-like |STAR domain |Phosphatidylcholine transfer protein |Human (Homo sapiens) [TaxId: 9606]
d1ffuc1 : (THR179) (ALA232) [view usage] : d.87.2.1 |CO dehydrogenase flavoprotein C-domain-like |CO dehydrogenase flavoprotein C-terminal domain-like |CO dehydrogenase flavoprotein C-terminal domain-like |Carbon monoxide (CO) dehydrogenase flavoprotein, C-terminal domain |Hydrogenophaga pseudoflava [TaxId: 47421]
d1xede_ : (PRO3) (THR33) [view usage] : b.1.1.1 |Immunoglobulin-like beta-sandwich |Immunoglobulin |V set domains (antibody variable domain-like) |Polymeric-immunoglobulin receptor, PIGR |Human (Homo sapiens) [TaxId: 9606]
d2o5ka1 : (ASP58) (LEU104) [view usage] : d.144.1.7 |Protein kinase-like (PK-like) |Protein kinase-like (PK-like) |Protein kinases, catalytic subunit |Glycogen synthase kinase-3 beta (Gsk3b) |Human (Homo sapiens) [TaxId: 9606]
d3mmda_ : (ALA329) (ILE375) [view usage] : c.1.8.3 |TIM beta/alpha-barrel |(Trans)glycosidases |beta-glycanases |Xylanase |Bacillus stearothermophilus, Xt6 [TaxId: 1422]
d1r89a1 : (ARG198) (SER231) [view usage] : a.160.1.3 |PAP/OAS1 substrate-binding domain |PAP/OAS1 substrate-binding domain |Archaeal tRNA CCA-adding enzyme substrate-binding domain |tRNA nucleotidyltransferase, second domain |Archaeoglobus fulgidus [TaxId: 2234]
List of distinct SCOP folds where this concept is used (in one or more of its domains):
c.1, c.81, d.68, c.56, d.129, c.23, f.4, d.144, d.185, d.171, b.6, b.1, b.55, d.87, b.26, d.16, a.160, d.93, d.54, d.227,
h.1