Tableau information
Concept source: d2od0b_ amino acid (a.a.) range (TYR65)(SER88)
nSSEs in this Concept: 4
String of secondary struct.elems. (SSEs) defining this concept: EEEH
Each SSE's a.a.range: (start resi) (end resi) SSEtype (H=Helix; E=Strand) followed by a numeric SSE ID:
(TYR65) (ARG70) E1
(PHE72) (LYS77) E2
(LYS77) (SER82) E3
(SER82) (SER88) H4
Orientation angles° of SSE-pairs; those in contact shown in bold font
E1
E2 169.3° E2
E3 117.7° -68.3° E3
H4 -113.8° 57.3° -79.2°
Footnote: Inferred from this concept's usages (listed below) was the angular variance of 1σ = ±13.0° about each orientation angle shown above.
Loci of concept usages (shown as a range of a.a. residue ids) in SCOP(v2.05) domains, along with their brief legend taken from SCOP
d1p71a_ : (GLU51) (ALA90) [view usage] : a.55.1.1 |IHF-like DNA-binding proteins |IHF-like DNA-binding proteins |Prokaryotic DNA-bending protein |HU protein |Anabaena sp. [TaxId: 1167]
d2aejb2 : (ILE294) (SER335) [view usage] : d.286.1.1 |TrkA C-terminal domain-like |TrkA C-terminal domain-like |TrkA C-terminal domain-like |Potassium channel-related protein MthK, C-terminal domain |Methanothermobacter thermautotrophicus [TaxId: 145262]
d4txoc_ : (ALA71) (SER125) [view usage] : c.47.1.10 |Thioredoxin fold |Thioredoxin-like |Glutathione peroxidase-like |automated matches |Bradyrhizobium diazoefficiens [TaxId: 224911]
d1iw7c_ : (MET858) (ARG879) [view usage] : e.29.1.1 |beta and beta-prime subunits of DNA dependent RNA-polymerase |beta and beta-prime subunits of DNA dependent RNA-polymerase |RNA-polymerase beta |RNA-polymerase beta |Thermus thermophilus [TaxId: 274]
d1za7a_ : (ASP153) (PHE186) [view usage] : b.121.4.5 |Nucleoplasmin-like/VP (viral coat and capsid proteins) |Positive stranded ssRNA viruses |Bromoviridae-like VP |automated matches |Cowpea chlorotic mottle virus [TaxId: 12303]
d1z6jt2 : (GLN110) (PHE147) [view usage] : b.1.2.1 |Immunoglobulin-like beta-sandwich |Fibronectin type III |Fibronectin type III |Extracellular region of human tissue factor |Human (Homo sapiens) [TaxId: 9606]
d4fiob_ : (ILE65) (ALA94) [view usage] : d.147.1.0 |Methenyltetrahydromethanopterin cyclohydrolase |Methenyltetrahydromethanopterin cyclohydrolase |automated matches |automated matches |Methanobrevibacter ruminantium [TaxId: 634498]
d4pxhc_ : (THR379) (ASN419) [view usage] : a.104.1.0 |Cytochrome P450 |Cytochrome P450 |automated matches |automated matches |Streptomyces sp. [TaxId: 1001349]
d1tz7b_ : (LEU234) (GLY265) [view usage] : c.1.8.1 |TIM beta/alpha-barrel |(Trans)glycosidases |Amylase, catalytic domain |Amylomaltase MalQ |Aquifex aeolicus [TaxId: 63363]
d1pz1a_ : (MSE1) (GLY25) [view usage] : c.1.7.1 |TIM beta/alpha-barrel |NAD(P)-linked oxidoreductase |Aldo-keto reductases (NADP) |Putative oxidoreductase YhdN |Bacillus subtilis [TaxId: 1423]
d2v4jb1 : (THR239) (CYS268) [view usage] : d.58.1.5 |Ferredoxin-like |4Fe-4S ferredoxins |Ferredoxin domains from multidomain proteins |DsrB insert domain |Desulfovibrio vulgaris [TaxId: 881]
d3hqda_ : (GLU180) (ARG221) [view usage] : c.37.1.9 |P-loop containing nucleoside triphosphate hydrolases |P-loop containing nucleoside triphosphate hydrolases |Motor proteins |automated matches |Human (Homo sapiens) [TaxId: 9606]
d1q8fa_ : (TYR259) (GLY308) [view usage] : c.70.1.1 |Nucleoside hydrolase |Nucleoside hydrolase |Nucleoside hydrolase |Pyrimidine nucleoside hydrolase YeiK |Escherichia coli [TaxId: 562]
d4pxha_ : (THR379) (SER423) [view usage] : a.104.1.0 |Cytochrome P450 |Cytochrome P450 |automated matches |automated matches |Streptomyces sp. [TaxId: 1001349]
d1lqaa_ : (MET1) (ASN27) [view usage] : c.1.7.1 |TIM beta/alpha-barrel |NAD(P)-linked oxidoreductase |Aldo-keto reductases (NADP) |Tas protein |Escherichia coli [TaxId: 562]
d2j6lb_ : (GLU37) (ILE78) [view usage] : c.82.1.0 |ALDH-like |ALDH-like |automated matches |automated matches |Human (Homo sapiens) [TaxId: 9606]
d3deqa1 : (SER28) (GLY57) [view usage] : d.54.1.0 |Enolase N-terminal domain-like |Enolase N-terminal domain-like |automated matches |automated matches |Thermotoga maritima [TaxId: 243274]
d4hefa_ : (TYR226) (HIS267) [view usage] : e.3.1.0 |beta-lactamase/transpeptidase-like |beta-lactamase/transpeptidase-like |automated matches |automated matches |Pseudomonas aeruginosa [TaxId: 287]
d1k8cb_ : (PRO6) (ALA31) [view usage] : c.1.7.1 |TIM beta/alpha-barrel |NAD(P)-linked oxidoreductase |Aldo-keto reductases (NADP) |Xylose reductase |Fungus (Candida tenuis) [TaxId: 45596]
d3b9xa_ : (TYR259) (GLY308) [view usage] : c.70.1.0 |Nucleoside hydrolase |Nucleoside hydrolase |automated matches |automated matches |Escherichia coli K-12 [TaxId: 83333]
d4b8ra_ : (ARG191) (VAL217) [view usage] : c.72.1.0 |Ribokinase-like |Ribokinase-like |automated matches |automated matches |Thermococcus litoralis [TaxId: 2265]
d1s48a_ : (THR500) (THR528) [view usage] : e.8.1.4 |DNA/RNA polymerases |DNA/RNA polymerases |RNA-dependent RNA-polymerase |Viral RNA polymerase |Bovine viral diarrhea virus [TaxId: 11099]
d1t4wa_ : (LYS373) (LYS417) [view usage] : b.2.5.2 |Common fold of diphtheria toxin/transcription factors/cytochrome f |p53-like transcription factors |p53 DNA-binding domain-like |Transcription factor CEP-1 |Nematode (Caenorhabditis elegans) [TaxId: 6239]
d1z52b1 : (LEU9) (SER33) [view usage] : d.169.1.0 |C-type lectin-like |C-type lectin-like |automated matches |automated matches |Aeromonas hydrophila [TaxId: 644]
d1ugja_ : (GLY98) (GLN132) [view usage] : b.41.1.3 |PRC-barrel domain |PRC-barrel domain |RIKEN cDNA 2310057j16 protein (KIAA1543) |RIKEN cDNA 2310057j16 protein (KIAA1543) |Mouse (Mus musculus) [TaxId: 10090]
d2vzsa4 : (LEU42) (SER66) [view usage] : b.18.1.5 |Galactose-binding domain-like |Galactose-binding domain-like |beta-Galactosidase/glucuronidase, N-terminal domain |Exochitosanase CsxA |Amycolatopsis orientalis [TaxId: 31958]
d3om6a_ : (THR418) (SER451) [view usage] : b.67.2.2 |5-bladed beta-propeller |Arabinanase/levansucrase/invertase |Levansucrase |Levansucrase |Bacillus megaterium [TaxId: 1404]
d1za7b_ : (ASP153) (PHE186) [view usage] : b.121.4.5 |Nucleoplasmin-like/VP (viral coat and capsid proteins) |Positive stranded ssRNA viruses |Bromoviridae-like VP |automated matches |Cowpea chlorotic mottle virus [TaxId: 12303]
d2zada1 : (SER28) (GLY57) [view usage] : d.54.1.0 |Enolase N-terminal domain-like |Enolase N-terminal domain-like |automated matches |automated matches |Thermotoga maritima [TaxId: 243274]
d1s4fa_ : (THR500) (MET526) [view usage] : e.8.1.4 |DNA/RNA polymerases |DNA/RNA polymerases |RNA-dependent RNA-polymerase |Viral RNA polymerase |Bovine viral diarrhea virus [TaxId: 11099]
d3cphh1 : (GLU276) (CYS301) [view usage] : c.3.1.3 |FAD/NAD(P)-binding domain |FAD/NAD(P)-binding domain |GDI-like N domain |automated matches |Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
d4pwva_ : (GLY380) (ASP416) [view usage] : a.104.1.0 |Cytochrome P450 |Cytochrome P450 |automated matches |automated matches |Streptomyces sp. [TaxId: 1001349]
d1hiza_ : (ALA330) (ILE376) [view usage] : c.1.8.3 |TIM beta/alpha-barrel |(Trans)glycosidases |beta-glycanases |Xylanase |Bacillus stearothermophilus, Xt6 [TaxId: 1422]
d4b6la_ : (GLU78) (ALA99) [view usage] : d.144.1.0 |Protein kinase-like (PK-like) |Protein kinase-like (PK-like) |automated matches |automated matches |Human (Homo sapiens) [TaxId: 9606]
d2lc6a_ : (GLY179) (GLY210) [view usage] : b.36.1.1 |PDZ domain-like |PDZ domain-like |PDZ domain |automated matches |Fruit fly (Drosophila melanogaster) [TaxId: 7227]
d1tz7a1 : (LEU234) (GLY265) [view usage] : c.1.8.1 |TIM beta/alpha-barrel |(Trans)glycosidases |Amylase, catalytic domain |Amylomaltase MalQ |Aquifex aeolicus [TaxId: 63363]
d4ocna_ : (PRO133) (ARG176) [view usage] : c.97.3.0 |Cytidine deaminase-like |JAB1/MPN domain |automated matches |automated matches |Baker's yeast (Saccharomyces cerevisiae) [TaxId: 559292]
d2xzm2_ : (GLY71) (LYS102) [view usage] : i.1.1.3 |Ribosome and ribosomal fragments |Ribosome and ribosomal fragments |Small subunit |Eukaryotic, cytoplasmic (40S subunit) |Tetrahymena thermophila [TaxId: 5911]
List of distinct SCOP folds where this concept is used (in one or more of its domains):
e.8, e.3, c.1, a.104, d.58, i.1, c.82, b.67, c.72, d.144, c.37, c.47, b.18, d.169, b.121, b.2, b.1, c.97, c.3, b.41,
a.55, d.54, b.36, c.70, d.198, e.29, d.147, d.286