Tableau information
Concept source: d4e6ya_ amino acid (a.a.) range (ASP3)(GLY39)
nSSEs in this Concept: 4
String of secondary struct.elems. (SSEs) defining this concept: EEEH
Each SSE's a.a.range: (start resi) (end resi) SSEtype (H=Helix; E=Strand) followed by a numeric SSE ID:
(ASP3) (HIS9) E1
(ALA14) (SER24) E2
(PRO28) (LYS34) E3
(LYS34) (GLY39) H4
Orientation angles° of SSE-pairs; those in contact shown in bold font
E1
E2 142.3° E2
E3 -62.1° 133.4° E3
H4 -22.9° -165.1° 51.6°
Footnote: Inferred from this concept's usages (listed below) was the angular variance of 1σ = ±13.0° about each orientation angle shown above.
Loci of concept usages (shown as a range of a.a. residue ids) in SCOP(v2.05) domains, along with their brief legend taken from SCOP
d2bvca1 : (TYR20) (ARG59) [view usage] : d.15.9.0 |beta-Grasp (ubiquitin-like) |Glutamine synthetase, N-terminal domain |automated matches |automated matches |Mycobacterium tuberculosis [TaxId: 83332]
d4g6ba_ : (ALA5) (GLY38) [view usage] : a.103.1.1 |Citrate synthase |Citrate synthase |Citrate synthase |Citrate synthase |Escherichia coli [TaxId: 562]
d3hbwa_ : (LEU66) (LEU101) [view usage] : b.42.1.1 |beta-Trefoil |Cytokine |Fibroblast growth factors (FGF) |automated matches |Human (Homo sapiens) [TaxId: 9606]
d1owba_ : (ALA5) (GLY38) [view usage] : a.103.1.1 |Citrate synthase |Citrate synthase |Citrate synthase |Citrate synthase |Escherichia coli [TaxId: 562]
d3eq5g_ : (GLU143) (ARG176) [view usage] : a.6.1.4 |Putative DNA-binding domain |Putative DNA-binding domain |Dachshund-homology domain |automated matches |Human (Homo sapiens) [TaxId: 9606]
d3c0gb_ : (ILE18) (SER51) [view usage] : d.144.1.0 |Protein kinase-like (PK-like) |Protein kinase-like (PK-like) |automated matches |automated matches |Human (Homo sapiens) [TaxId: 9606]
d1oqjb_ : (ASP90) (LYS139) [view usage] : d.217.1.1 |SAND domain-like |SAND domain-like |SAND domain |Glucocorticoid modulatory element binding protein-1 (Gmeb1) |Human (Homo sapiens) [TaxId: 9606]
d1nxea_ : (ALA5) (GLY38) [view usage] : a.103.1.1 |Citrate synthase |Citrate synthase |Citrate synthase |Citrate synthase |Escherichia coli [TaxId: 562]
d1luzb_ : (ARG18) (MSE46) [view usage] : b.40.4.5 |OB-fold |Nucleic acid-binding proteins |Cold shock DNA-binding domain-like |Viral structural mimic of eIF2alpha |Vaccinia virus [TaxId: 10245]
d2whia1 : (TYR20) (ARG59) [view usage] : d.15.9.0 |beta-Grasp (ubiquitin-like) |Glutamine synthetase, N-terminal domain |automated matches |automated matches |Mycobacterium tuberculosis [TaxId: 83332]
d4ir0b_ : (ASN89) (MSE135) [view usage] : d.32.1.0 |Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase |Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase |automated matches |automated matches |Bacillus anthracis [TaxId: 198094]
d3zvjh_ : (GLY125) (GLY166) [view usage] : c.47.1.0 |Thioredoxin fold |Thioredoxin-like |automated matches |automated matches |Blood fluke (Schistosoma mansoni) [TaxId: 6183]
d3msub_ : (ALA10) (GLY44) [view usage] : a.103.1.0 |Citrate synthase |Citrate synthase |automated matches |automated matches |Francisella tularensis [TaxId: 263]
d1blbb1 : (PRO1) (GLY328) [view usage] : b.11.1.1 |gamma-Crystallin-like |gamma-Crystallin-like |Crystallins/Ca-binding development proteins |beta-Crystallin |Cow (Bos taurus) [TaxId: 9913]
d4jada_ : (LYS6) (GLY38) [view usage] : a.103.1.1 |Citrate synthase |Citrate synthase |Citrate synthase |Citrate synthase |Escherichia coli [TaxId: 562]
d1e1ea_ : (THR470) (ALA501) [view usage] : c.1.8.4 |TIM beta/alpha-barrel |(Trans)glycosidases |Family 1 of glycosyl hydrolase |Plant beta-glucosidase (myrosinase) |Maize (Zea mays), zmglu1 [TaxId: 4577]
d2ch4a1 : (ASP573) (GLN600) [view usage] : b.40.7.1 |OB-fold |CheW-like |CheW-like |Histidine kinase CheA, C-terminal domain |Thermotoga maritima [TaxId: 2336]
d1e1eb_ : (THR470) (ALA501) [view usage] : c.1.8.4 |TIM beta/alpha-barrel |(Trans)glycosidases |Family 1 of glycosyl hydrolase |Plant beta-glucosidase (myrosinase) |Maize (Zea mays), zmglu1 [TaxId: 4577]
d3eq5i_ : (THR145) (ASN172) [view usage] : a.6.1.4 |Putative DNA-binding domain |Putative DNA-binding domain |Dachshund-homology domain |automated matches |Human (Homo sapiens) [TaxId: 9606]
d3kcmb_ : (PRO132) (SER167) [view usage] : c.47.1.0 |Thioredoxin fold |Thioredoxin-like |automated matches |automated matches |Geobacter metallireducens [TaxId: 269799]
d1gydb_ : (LYS300) (ASP339) [view usage] : b.67.2.1 |5-bladed beta-propeller |Arabinanase/levansucrase/invertase |alpha-L-arabinanase-like |alpha-L-arabinanase |Cellvibrio cellulosa [TaxId: 155077]
d1ahja_ : (TYR94) (GLY122) [view usage] : d.149.1.1 |Nitrile hydratase alpha chain |Nitrile hydratase alpha chain |Nitrile hydratase alpha chain |Iron-containing nitrile hydratase |Rhodococcus erythropolis [TaxId: 1833]
d3bpnb2 : (THR133) (LYS167) [view usage] : b.1.2.1 |Immunoglobulin-like beta-sandwich |Fibronectin type III |Fibronectin type III |automated matches |Human (Homo sapiens) [TaxId: 9606]
d1rtva_ : (MET1) (CYS39) [view usage] : b.82.1.1 |Double-stranded beta-helix |RmlC-like cupins |dTDP-sugar isomerase |dTDP-4-dehydrorhamnose 3,5-epimerase RmlC |Pseudomonas aeruginosa [TaxId: 287]
d3zvji_ : (GLY125) (LYS164) [view usage] : c.47.1.0 |Thioredoxin fold |Thioredoxin-like |automated matches |automated matches |Blood fluke (Schistosoma mansoni) [TaxId: 6183]
d2q6oa2 : (TYR165) (GLN203) [view usage] : b.141.1.0 |Bacterial fluorinating enzyme, C-terminal domain |Bacterial fluorinating enzyme, C-terminal domain |automated matches |automated matches |Salinispora tropica [TaxId: 369723]
d4e6ya_ : (ASP3) (GLY39) [view usage] : a.103.1.1 |Citrate synthase |Citrate synthase |Citrate synthase |automated matches |Vibrio vulnificus [TaxId: 216895]
d3zvjc_ : (GLY125) (HIS165) [view usage] : c.47.1.0 |Thioredoxin fold |Thioredoxin-like |automated matches |automated matches |Blood fluke (Schistosoma mansoni) [TaxId: 6183]
d3bwud_ : (ASP36) (GLY73) [view usage] : b.167.1.1 |FimD N-terminal domain-like |FimD N-terminal domain-like |Usher N-domain |Outer membrane usher protein FimD |Escherichia coli [TaxId: 562]
List of distinct SCOP folds where this concept is used (in one or more of its domains):
c.1, b.82, b.67, d.144, b.40, c.47, a.103, d.32, b.1, b.42, b.11, d.15, d.149, a.6, d.217, b.141, b.167