Tableau information
Concept source: d1hana1 amino acid (a.a.) range (ASP39)(GLY84)
nSSEs in this Concept: 4
String of secondary struct.elems. (SSEs) defining this concept: EEEH
Each SSE's a.a.range: (start resi) (end resi) SSEtype (H=Helix; E=Strand) followed by a numeric SSE ID:
(ASP39) (ILE43) E1
(ARG49) (GLN54) E2
(PHE62) (ALA68) E3
(ALA70) (GLY84) H4
Orientation angles° of SSE-pairs; those in contact shown in bold font
E1
E2 155.5° E2
E3 -44.9° 159.4° E3
H4 114.8° -55.9° 124.3°
Footnote: Inferred from this concept's usages (listed below) was the angular variance of 1σ = ±13.0° about each orientation angle shown above.
Loci of concept usages (shown as a range of a.a. residue ids) in SCOP(v2.05) domains, along with their brief legend taken from SCOP
d1wgva_ : (GLY16) (GLY44) [view usage] : b.15.1.4 |HSP20-like chaperones |HSP20-like chaperones |Nuclear movement domain |NudC domain containing protein 3, NUDCD3 (KIAA1068) |Human (Homo sapiens) [TaxId: 9606]
d1i13b_ : (ASP154) (ALA196) [view usage] : c.61.1.1 |PRTase-like |PRTase-like |Phosphoribosyltransferases (PRTases) |Hypoxanthine PRTase |Trypanosoma cruzi [TaxId: 5693]
d1vlya2 : (GLN142) (LEU177) [view usage] : d.250.1.1 |Folate-binding domain |Folate-binding domain |Aminomethyltransferase folate-binding domain |Hypothetical protein YgfZ, N-terminal domain |Escherichia coli [TaxId: 562]
d1m56b1 : (ASP133) (SER163) [view usage] : b.6.1.2 |Cupredoxin-like |Cupredoxins |Periplasmic domain of cytochrome c oxidase subunit II |Cytochrome c oxidase |Rhodobacter sphaeroides [TaxId: 1063]
d3og8a_ : (GLU804) (CYS841) [view usage] : b.88.2.1 |Mss4-like |RIG-I C-terminal-like |RIG-I C-terminal domain-like |RIG-I C-terminal domain |Human (Homo sapiens) [TaxId: 9606]
d1xoca1 : (LYS191) (ALA234) [view usage] : c.94.1.1 |Periplasmic binding protein-like II |Periplasmic binding protein-like II |Phosphate binding protein-like |Oligo-peptide binding protein (OPPA) |Bacillus subtilis [TaxId: 1423]
d2gbca1 : (GLU359) (THR396) [view usage] : b.70.3.1 |8-bladed beta-propeller |DPP6 N-terminal domain-like |DPP6 N-terminal domain-like |automated matches |Norway rat (Rattus norvegicus) [TaxId: 10116]
d2gbca1 : (TYR458) (GLN506) [view usage] : b.70.3.1 |8-bladed beta-propeller |DPP6 N-terminal domain-like |DPP6 N-terminal domain-like |automated matches |Norway rat (Rattus norvegicus) [TaxId: 10116]
d3b83a_ : (LEU1) (ASP43) [view usage] : b.1.2.0 |Immunoglobulin-like beta-sandwich |Fibronectin type III |automated matches |automated matches |Human (Homo sapiens) [TaxId: 9606]
d3prna_ : (GLY77) (VAL160) [view usage] : f.4.3.1 |Transmembrane beta-barrels |Porins |Porin |Porin |Rhodopseudomonas blastica, strain DSM2131 [TaxId: 1075]
d1k8kf_ : (GLN49) (ALA98) [view usage] : d.198.2.1 |Secretion chaperone-like |Arp2/3 complex subunits |Arp2/3 complex subunits |ARPC4 (20 kDa subunit) |Cow (Bos taurus) [TaxId: 9913]
d1r89a2 : (ASP88) (LYS142) [view usage] : d.218.1.7 |Nucleotidyltransferase |Nucleotidyltransferase |Archaeal tRNA CCA-adding enzyme catalytic domain |tRNA nucleotidyltransferase, N-terminal domain |Archaeoglobus fulgidus [TaxId: 2234]
d2bjoa_ : (ALA6) (GLY38) [view usage] : d.227.1.0 |OsmC-like |OsmC-like |automated matches |automated matches |Bacillus subtilis [TaxId: 1423]
d3izbi_ : (VAL19) (GLY71) [view usage] : i.1.1.3 |Ribosome and ribosomal fragments |Ribosome and ribosomal fragments |Small subunit |Eukaryotic, cytoplasmic (40S subunit) |Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
d1xhxa2 : (LYS490) (LYS539) [view usage] : e.8.1.1 |DNA/RNA polymerases |DNA/RNA polymerases |DNA polymerase I |phi29 DNA polymerase |Bacteriophage phi-29 [TaxId: 10756]
d2dvia2 : (SER89) (ILE141) [view usage] : d.218.1.7 |Nucleotidyltransferase |Nucleotidyltransferase |Archaeal tRNA CCA-adding enzyme catalytic domain |tRNA nucleotidyltransferase, N-terminal domain |Archaeoglobus fulgidus [TaxId: 2234]
d1ufqa_ : (VAL107) (SER142) [view usage] : c.37.1.6 |P-loop containing nucleoside triphosphate hydrolases |P-loop containing nucleoside triphosphate hydrolases |Phosphoribulokinase/pantothenate kinase |Uridine-cytidine kinase 2 |Human (Homo sapiens) [TaxId: 9606]
d1tyqf_ : (GLN49) (ALA98) [view usage] : d.198.2.1 |Secretion chaperone-like |Arp2/3 complex subunits |Arp2/3 complex subunits |ARPC4 (20 kDa subunit) |Cow (Bos taurus) [TaxId: 9913]
d2w88a_ : (VAL21) (LEU59) [view usage] : b.6.1.1 |Cupredoxin-like |Cupredoxins |Plastocyanin/azurin-like |Plastocyanin |Phormidium laminosum [TaxId: 32059]
d1oo8a_ : (PHE227) (ASN265) [view usage] : e.1.1.1 |Serpins |Serpins |Serpins |Antitrypsin, alpha-1 |Human (Homo sapiens) [TaxId: 9606]
d2e7ha_ : (SER12) (ARG57) [view usage] : b.1.2.0 |Immunoglobulin-like beta-sandwich |Fibronectin type III |automated matches |automated matches |Human (Homo sapiens) [TaxId: 9606]
d3qi0c_ : (ALA146) (GLY182) [view usage] : b.69.5.2 |7-bladed beta-propeller |RCC1/BLIP-II |beta-lactamase inhibitor protein-II, BLIP-II |automated matches |Streptomyces exfoliatus [TaxId: 1905]
d2clta1 : (GLU310) (ASP344) [view usage] : b.66.1.1 |4-bladed beta-propeller |Hemopexin-like domain |Hemopexin-like domain |automated matches |Human (Homo sapiens) [TaxId: 9606]
d1qzqa1 : (ALA253) (HIS290) [view usage] : d.136.1.3 |Phospholipase D/nuclease |Phospholipase D/nuclease |Tyrosyl-DNA phosphodiesterase TDP1 |Tyrosyl-DNA phosphodiesterase TDP1 |Human (Homo sapiens) [TaxId: 9606]
d1vqza1 : (ASN247) (LEU292) [view usage] : d.224.1.3 |SufE/NifU |SufE/NifU |SP1160 C-terminal domain-like |LplA-like protein SP1160, C-terminal domain |Pneumococcus (Streptococcus pneumoniae) [TaxId: 1313]
d1q7fb_ : (ASN918) (ASN958) [view usage] : b.68.9.1 |6-bladed beta-propeller |NHL repeat |NHL repeat |Brain tumor cg10719-pa |Fruit fly (Drosophila melanogaster) [TaxId: 7227]
d1jd1e_ : (PRO7) (GLU54) [view usage] : d.79.1.1 |Bacillus chorismate mutase-like |YjgF-like |YjgF/L-PSP |Highdosage growth inhibitor YER057cp (YEO7_YEAST) |Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
d4jica_ : (GLU6) (ALA46) [view usage] : c.1.4.0 |TIM beta/alpha-barrel |FMN-linked oxidoreductases |automated matches |automated matches |Agrobacterium tumefaciens [TaxId: 358]
d1q7fa_ : (ASN918) (ASN958) [view usage] : b.68.9.1 |6-bladed beta-propeller |NHL repeat |NHL repeat |Brain tumor cg10719-pa |Fruit fly (Drosophila melanogaster) [TaxId: 7227]
d3sd0b_ : (ILE62) (LEU104) [view usage] : d.144.1.7 |Protein kinase-like (PK-like) |Protein kinase-like (PK-like) |Protein kinases, catalytic subunit |Glycogen synthase kinase-3 beta (Gsk3b) |Human (Homo sapiens) [TaxId: 9606]
d1v7va2 : (TRP24) (ARG54) [view usage] : b.30.5.3 |Supersandwich |Galactose mutarotase-like |Glycosyltransferase family 36 N-terminal domain |Chitobiose phosphorylase ChbP |Vibrio proteolyticus [TaxId: 671]
d3qi0f_ : (ASP106) (GLY143) [view usage] : b.69.5.2 |7-bladed beta-propeller |RCC1/BLIP-II |beta-lactamase inhibitor protein-II, BLIP-II |automated matches |Streptomyces exfoliatus [TaxId: 1905]
d1i0lb_ : (ASP154) (ARG197) [view usage] : c.61.1.1 |PRTase-like |PRTase-like |Phosphoribosyltransferases (PRTases) |Hypoxanthine PRTase |Trypanosoma cruzi [TaxId: 5693]
d1yx2b1 : (PHE169) (ALA204) [view usage] : d.250.1.1 |Folate-binding domain |Folate-binding domain |Aminomethyltransferase folate-binding domain |Glycine cleavage system T protein, GcvT |Bacillus subtilis [TaxId: 1423]
d1plca_ : (PHE19) (SER56) [view usage] : b.6.1.1 |Cupredoxin-like |Cupredoxins |Plastocyanin/azurin-like |Plastocyanin |Poplar (Populus nigra), variant italica [TaxId: 3691]
d1g8aa_ : (MET1) (TYR36) [view usage] : c.66.1.3 |S-adenosyl-L-methionine-dependent methyltransferases |S-adenosyl-L-methionine-dependent methyltransferases |Fibrillarin homologue |Fibrillarin homologue |Pyrococcus horikoshii [TaxId: 53953]
d9pcya_ : (PHE19) (SER56) [view usage] : b.6.1.1 |Cupredoxin-like |Cupredoxins |Plastocyanin/azurin-like |Plastocyanin |French bean (Phaseolus vulgaris) [TaxId: 3885]
d1ovad_ : (ARG228) (LEU260) [view usage] : e.1.1.1 |Serpins |Serpins |Serpins |Ovalbumin |Chicken (Gallus gallus) [TaxId: 9031]
d1jd1d_ : (THR4) (GLU54) [view usage] : d.79.1.1 |Bacillus chorismate mutase-like |YjgF-like |YjgF/L-PSP |Highdosage growth inhibitor YER057cp (YEO7_YEAST) |Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
d1p18b_ : (ASP154) (GLN198) [view usage] : c.61.1.1 |PRTase-like |PRTase-like |Phosphoribosyltransferases (PRTases) |Hypoxanthine PRTase |Trypanosoma cruzi [TaxId: 5693]
d1uv5a_ : (ILE62) (LEU104) [view usage] : d.144.1.7 |Protein kinase-like (PK-like) |Protein kinase-like (PK-like) |Protein kinases, catalytic subunit |Glycogen synthase kinase-3 beta (Gsk3b) |Human (Homo sapiens) [TaxId: 9606]
d1yx2a1 : (PHE169) (ALA204) [view usage] : d.250.1.1 |Folate-binding domain |Folate-binding domain |Aminomethyltransferase folate-binding domain |Glycine cleavage system T protein, GcvT |Bacillus subtilis [TaxId: 1423]
List of distinct SCOP folds where this concept is used (in one or more of its domains):
b.68, b.70, e.8, c.1, c.94, b.69, i.1, b.30, c.66, f.4, d.144, c.37, b.6, d.32, b.1, c.61, d.250, d.79, e.1, b.88,
d.218, d.227, b.15, d.136, d.224, b.66, d.198