Tableau information
Concept source: d2hqna_ amino acid (a.a.) range (ASP125)(ALA156)
nSSEs in this Concept: 4
String of secondary struct.elems. (SSEs) defining this concept: EEEH
Each SSE's a.a.range: (start resi) (end resi) SSEtype (H=Helix; E=Strand) followed by a numeric SSE ID:
(ASP125) (SER129) E1
(GLU133) (LYS138) E2
(ARG140) (LYS145) E3
(PRO148) (ALA156) H4
Orientation angles° of SSE-pairs; those in contact shown in bold font
E1
E2 155.8° E2
E3 -39.4° 162.5° E3
H4 -131.8° 52.3° -131.2°
Footnote: Inferred from this concept's usages (listed below) was the angular variance of 1σ = ±10.2° about each orientation angle shown above.
Loci of concept usages (shown as a range of a.a. residue ids) in SCOP(v2.05) domains, along with their brief legend taken from SCOP
d2ajqa1 : (VAL3) (GLY53) [view usage] : c.55.3.5 |Ribonuclease H-like motif |Ribonuclease H-like |DnaQ-like 3'-5' exonuclease |Exonuclease domain of T7 DNA polymerase |Bacteriophage T7 [TaxId: 10760]
d2dlwa_ : (ARG60) (GLY109) [view usage] : b.55.1.0 |PH domain-like barrel |PH domain-like |automated matches |automated matches |Human (Homo sapiens) [TaxId: 9606]
d1e8oa_ : (ARG26) (MET73) [view usage] : d.49.1.1 |Signal recognition particle alu RNA binding heterodimer, SRP9/14 |Signal recognition particle alu RNA binding heterodimer, SRP9/14 |Signal recognition particle alu RNA binding heterodimer, SRP9/14 |Signal recognition particle 9KDa protein, SRP9 |Human (Homo sapiens) [TaxId: 9606]
d1eqna_ : (VAL204) (GLN244) [view usage] : e.13.1.1 |DNA primase core |DNA primase core |DNA primase DnaG catalytic core |DNA primase DnaG catalytic core |Escherichia coli [TaxId: 562]
d2j3pb_ : (PRO26) (GLN58) [view usage] : b.42.1.1 |beta-Trefoil |Cytokine |Fibroblast growth factors (FGF) |automated matches |Norway rat (Rattus norvegicus) [TaxId: 10116]
d1nr4e_ : (LYS25) (SER71) [view usage] : d.9.1.1 |IL8-like |Interleukin 8-like chemokines |Interleukin 8-like chemokines |Thymus and activation-regulated chemokine, TRAC |Human (Homo sapiens) [TaxId: 9606]
d2av9b_ : (ALA89) (GLN143) [view usage] : d.38.1.1 |Thioesterase/thiol ester dehydrase-isomerase |Thioesterase/thiol ester dehydrase-isomerase |4HBT-like |automated matches |Pseudomonas aeruginosa [TaxId: 208964]
d1bbua1 : (MET74) (GLN111) [view usage] : b.40.4.1 |OB-fold |Nucleic acid-binding proteins |Anticodon-binding domain |Lysyl-tRNA synthetase (LysRS) |Escherichia coli, gene lysS [TaxId: 562]
d1qe6a_ : (LYS23) (ASN71) [view usage] : d.9.1.1 |IL8-like |Interleukin 8-like chemokines |Interleukin 8-like chemokines |Interleukin-8, IL-8 |Human (Homo sapiens) [TaxId: 9606]
d4mhea_ : (VAL26) (LYS67) [view usage] : d.9.1.0 |IL8-like |Interleukin 8-like chemokines |automated matches |automated matches |Human (Homo sapiens) [TaxId: 9606]
d1b50a_ : (ALA25) (TYR61) [view usage] : d.9.1.1 |IL8-like |Interleukin 8-like chemokines |Interleukin 8-like chemokines |Macrophage inflammatory protein, MIP |Human (Homo sapiens), 1-alpha [TaxId: 9606]
d2d0od_ : (LEU60) (GLY108) [view usage] : c.51.3.2 |Anticodon-binding domain-like |B12-dependent dehydatase associated subunit |Dehydratase-reactivating factor beta subunit |automated matches |Klebsiella oxytoca [TaxId: 571]
d3onab_ : (ILE25) (LEU72) [view usage] : d.9.1.1 |IL8-like |Interleukin 8-like chemokines |Interleukin 8-like chemokines |automated matches |Human (Homo sapiens) [TaxId: 9606]
d4koob_ : (VAL175) (GLY232) [view usage] : d.18.1.2 |ssDNA-binding transcriptional regulator domain |ssDNA-binding transcriptional regulator domain |Plant transcriptional regulator PBF-2 |automated matches |Thale cress (Arabidopsis thaliana) [TaxId: 3702]
d2ktqa1 : (ALA305) (LEU345) [view usage] : c.55.3.5 |Ribonuclease H-like motif |Ribonuclease H-like |DnaQ-like 3'-5' exonuclease |Exonuclease domain of prokaryotic DNA polymerase |Thermus aquaticus [TaxId: 271]
d1v61a_ : (GLY78) (SER127) [view usage] : b.55.1.1 |PH domain-like barrel |PH domain-like |Pleckstrin-homology domain (PH domain) |Rac/CDC42 GEF 6, alpha-pix |Mouse (Mus musculus) [TaxId: 10090]
d2hoia2 : (ASP184) (VAL227) [view usage] : d.163.1.1 |DNA breaking-rejoining enzymes |DNA breaking-rejoining enzymes |Lambda integrase-like, catalytic core |automated matches |Enterobacteria phage [TaxId: 10678]
d2x6gp_ : (ALA26) (GLU67) [view usage] : d.9.1.1 |IL8-like |Interleukin 8-like chemokines |Interleukin 8-like chemokines |Macrophage inflammatory protein, MIP |Human (Homo sapiens), 1-alpha [TaxId: 9606]
d1h9ma1 : (SER14) (GLN48) [view usage] : b.40.6.2 |OB-fold |MOP-like |BiMOP, duplicated molybdate-binding domain |Cytoplasmic molybdate-binding protein ModG |Azotobacter vinelandii [TaxId: 354]
d2edva_ : (SER6) (PHE49) [view usage] : b.36.1.0 |PDZ domain-like |PDZ domain-like |automated matches |automated matches |Human (Homo sapiens) [TaxId: 9606]
d1ddma_ : (PHE149) (GLU200) [view usage] : b.55.1.2 |PH domain-like barrel |PH domain-like |Phosphotyrosine-binding domain (PTB) |Numb |Fruit fly (Drosophila melanogaster) [TaxId: 7227]
d4kooc_ : (LYS174) (GLY232) [view usage] : d.18.1.2 |ssDNA-binding transcriptional regulator domain |ssDNA-binding transcriptional regulator domain |Plant transcriptional regulator PBF-2 |automated matches |Thale cress (Arabidopsis thaliana) [TaxId: 3702]
d2afgd_ : (PRO11) (GLN43) [view usage] : b.42.1.1 |beta-Trefoil |Cytokine |Fibroblast growth factors (FGF) |Acidic FGF (FGF1) |Human (Homo sapiens) [TaxId: 9606]
d1nr4d_ : (THR26) (GLU69) [view usage] : d.9.1.1 |IL8-like |Interleukin 8-like chemokines |Interleukin 8-like chemokines |Thymus and activation-regulated chemokine, TRAC |Human (Homo sapiens) [TaxId: 9606]
d2dzda2 : (LYS212) (SER253) [view usage] : d.142.1.0 |ATP-grasp |Glutathione synthetase ATP-binding domain-like |automated matches |automated matches |Geobacillus thermodenitrificans [TaxId: 33940]
d3n52d_ : (GLN24) (LYS69) [view usage] : d.9.1.1 |IL8-like |Interleukin 8-like chemokines |Interleukin 8-like chemokines |Macrophage inflammatory protein-2 |Mouse (Mus musculus) [TaxId: 10090]
d2hbja2 : (LYS233) (ASN283) [view usage] : c.55.3.5 |Ribonuclease H-like motif |Ribonuclease H-like |DnaQ-like 3'-5' exonuclease |Exosome complex exonuclease RRP6 |Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
d5crxb2 : (ILE185) (GLY229) [view usage] : d.163.1.1 |DNA breaking-rejoining enzymes |DNA breaking-rejoining enzymes |Lambda integrase-like, catalytic core |Cre recombinase |Bacteriophage P1 [TaxId: 10678]
d3ivaa3 : (PRO1003) (ALA1048) [view usage] : d.173.1.1 |Methionine synthase activation domain-like |Methionine synthase activation domain-like |Methionine synthase SAM-binding domain |Methionine synthase SAM-binding domain |Escherichia coli [TaxId: 562]
d1j8ia_ : (LYS25) (SER67) [view usage] : d.9.1.1 |IL8-like |Interleukin 8-like chemokines |Interleukin 8-like chemokines |Lymphotactin |Human (Homo sapiens) [TaxId: 9606]
d1nr4b_ : (THR26) (ARG70) [view usage] : d.9.1.1 |IL8-like |Interleukin 8-like chemokines |Interleukin 8-like chemokines |Thymus and activation-regulated chemokine, TRAC |Human (Homo sapiens) [TaxId: 9606]
d1yt3a3 : (ALA26) (LEU70) [view usage] : c.55.3.5 |Ribonuclease H-like motif |Ribonuclease H-like |DnaQ-like 3'-5' exonuclease |Ribonuclease D, catalytic domain |Escherichia coli [TaxId: 562]
d2lj1a_ : (ASP29) (LYS61) [view usage] : b.34.2.0 |SH3-like barrel |SH3-domain |automated matches |automated matches |Human (Homo sapiens) [TaxId: 9606]
d1o7ya_ : (LYS26) (VAL68) [view usage] : d.9.1.1 |IL8-like |Interleukin 8-like chemokines |Interleukin 8-like chemokines |IP-10/CXCL10 |Human (Homo sapiens) [TaxId: 9606]
d1cm9b_ : (SER30) (GLN68) [view usage] : d.9.1.1 |IL8-like |Interleukin 8-like chemokines |Interleukin 8-like chemokines |Macrophage inflammatory protein, MIP |Kaposi's sarcoma-associated herpesvirus, VMIP-II [TaxId: 37296]
d2hdma_ : (THR26) (ARG70) [view usage] : d.9.1.1 |IL8-like |Interleukin 8-like chemokines |Interleukin 8-like chemokines |automated matches |Human (Homo sapiens) [TaxId: 9606]
d3bjub1 : (HIS133) (LEU176) [view usage] : b.40.4.0 |OB-fold |Nucleic acid-binding proteins |automated matches |automated matches |Human (Homo sapiens) [TaxId: 9606]
d1zxta_ : (LYS27) (LEU67) [view usage] : d.9.1.0 |IL8-like |Interleukin 8-like chemokines |automated matches |automated matches |Human herpesvirus 8 [TaxId: 37296]
d1m8aa_ : (VAL21) (LYS65) [view usage] : d.9.1.1 |IL8-like |Interleukin 8-like chemokines |Interleukin 8-like chemokines |Macrophage inflammatory protein, MIP |Human (Homo sapiens), ccl20/mip-3a [TaxId: 9606]
d1skra1 : (VAL3) (GLY53) [view usage] : c.55.3.5 |Ribonuclease H-like motif |Ribonuclease H-like |DnaQ-like 3'-5' exonuclease |Exonuclease domain of T7 DNA polymerase |Bacteriophage T7 [TaxId: 10760]
d2ra4a_ : (LYS26) (LEU66) [view usage] : d.9.1.1 |IL8-like |Interleukin 8-like chemokines |Interleukin 8-like chemokines |automated matches |Human (Homo sapiens) [TaxId: 9606]
d2o8rb3 : (THR440) (GLY497) [view usage] : d.136.1.4 |Phospholipase D/nuclease |Phospholipase D/nuclease |Polyphosphate kinase C-terminal domain |Polyphosphate kinase, PPK |Porphyromonas gingivalis [TaxId: 837]
d2hz9a_ : (LYS10) (GLN43) [view usage] : b.42.1.1 |beta-Trefoil |Cytokine |Fibroblast growth factors (FGF) |Acidic FGF (FGF1) |Human (Homo sapiens) [TaxId: 9606]
d2d0ob1 : (LEU60) (GLY108) [view usage] : c.51.3.2 |Anticodon-binding domain-like |B12-dependent dehydatase associated subunit |Dehydratase-reactivating factor beta subunit |Diol dehydratase-reactivating factor small subunit DdrB |Klebsiella oxytoca [TaxId: 571]
d1ws1a_ : (GLY95) (GLY139) [view usage] : d.167.1.0 |Peptide deformylase |Peptide deformylase |automated matches |automated matches |Bacillus cereus [TaxId: 1396]
d1nr4h_ : (THR26) (ARG70) [view usage] : d.9.1.1 |IL8-like |Interleukin 8-like chemokines |Interleukin 8-like chemokines |Thymus and activation-regulated chemokine, TRAC |Human (Homo sapiens) [TaxId: 9606]
d1byra_ : (PRO91) (GLY148) [view usage] : d.136.1.1 |Phospholipase D/nuclease |Phospholipase D/nuclease |Nuclease |Nuclease Nuc |Salmonella typhimurium [TaxId: 90371]
d1qe6d_ : (LYS23) (SER72) [view usage] : d.9.1.1 |IL8-like |Interleukin 8-like chemokines |Interleukin 8-like chemokines |Interleukin-8, IL-8 |Human (Homo sapiens) [TaxId: 9606]
d1e8oc_ : (ARG26) (VAL74) [view usage] : d.49.1.1 |Signal recognition particle alu RNA binding heterodimer, SRP9/14 |Signal recognition particle alu RNA binding heterodimer, SRP9/14 |Signal recognition particle alu RNA binding heterodimer, SRP9/14 |Signal recognition particle 9KDa protein, SRP9 |Human (Homo sapiens) [TaxId: 9606]
d1nr4f_ : (THR26) (SER71) [view usage] : d.9.1.1 |IL8-like |Interleukin 8-like chemokines |Interleukin 8-like chemokines |Thymus and activation-regulated chemokine, TRAC |Human (Homo sapiens) [TaxId: 9606]
List of distinct SCOP folds where this concept is used (in one or more of its domains):
b.40, c.55, b.42, e.13, d.38, c.51, b.55, d.167, d.142, b.34, a.4, d.136, b.36, d.9, d.18, d.163, d.173, d.49