Tableau information
Concept source: d3ul6b_ amino acid (a.a.) range (ALA62)(VAL103)
nSSEs in this Concept: 4
String of secondary struct.elems. (SSEs) defining this concept: EEEE
Each SSE's a.a.range: (start resi) (end resi) SSEtype (H=Helix; E=Strand) followed by a numeric SSE ID:
(ALA62) (PHE68) E1
(VAL70) (GLY76) E2
(LYS79) (LYS89) E3
(ASN93) (VAL103) E4
Orientation angles° of SSE-pairs; those in contact shown in bold font
E1
E2 -52.2° E2
E3 175.9° 127.9° E3
E4 -31.2° -64.7° 152.6°
Footnote: Inferred from this concept's usages (listed below) was the angular variance of 1σ = ±11.4° about each orientation angle shown above.
Loci of concept usages (shown as a range of a.a. residue ids) in SCOP(v2.05) domains, along with their brief legend taken from SCOP
d2qdna1 : (ILE129) (PHE171) [view usage] : b.22.1.1 |TNF-like |TNF-like |TNF-like |Glucocorticoid-induced TNF-related ligand, TNFSF18 |Mouse (Mus musculus) [TaxId: 10090]
d1a66a_ : (GLU57) (ASP119) [view usage] : b.2.5.3 |Common fold of diphtheria toxin/transcription factors/cytochrome f |p53-like transcription factors |Rel/Dorsal transcription factors, DNA-binding domain |T-cell transcription factor NFAT1 (NFATC), DNA-binding domain |Human (Homo sapiens) [TaxId: 9606]
d2etta_ : (LEU8) (PRO49) [view usage] : d.189.1.0 |PX domain |PX domain |automated matches |automated matches |Human (Homo sapiens) [TaxId: 9606]
d3teya1 : (TYR259) (ILE334) [view usage] : f.60.1.1 |Anthrax protective antigen C-terminal-like |Anthrax protective antigen C-terminal-like |Anthrax protective antigen C-terminal-like |Anthrax protective antigen C-terminal-like |Anthrax bacillus (Bacillus anthracis) [TaxId: 1392]
d2xy2a2 : (ALA145) (VAL207) [view usage] : b.1.1.0 |Immunoglobulin-like beta-sandwich |Immunoglobulin |automated matches |automated matches |Human (Homo sapiens) [TaxId: 9606]
d3ul6b_ : (ALA62) (VAL103) [view usage] : d.17.1.0 |Cystatin-like |Cystatin/monellin |automated matches |automated matches |Saccharum officinarum [TaxId: 4547]
d1v88a_ : (VAL9) (LYS39) [view usage] : b.55.1.1 |PH domain-like barrel |PH domain-like |Pleckstrin-homology domain (PH domain) |Oxysterol binding protein-related protein 8 (ORP-8, KIAA1451) |Human (Homo sapiens) [TaxId: 9606]
d1zc4b1 : (VAL175) (ARG212) [view usage] : b.55.1.1 |PH domain-like barrel |PH domain-like |Pleckstrin-homology domain (PH domain) |Exocyst complex protein EXO84 |Norway rat (Rattus norvegicus) [TaxId: 10116]
d1zc3b_ : (VAL175) (PRO210) [view usage] : b.55.1.1 |PH domain-like barrel |PH domain-like |Pleckstrin-homology domain (PH domain) |automated matches |Norway rat (Rattus norvegicus) [TaxId: 10116]
d3tewa1 : (TYR259) (ILE334) [view usage] : f.60.1.1 |Anthrax protective antigen C-terminal-like |Anthrax protective antigen C-terminal-like |Anthrax protective antigen C-terminal-like |Anthrax protective antigen C-terminal-like |Anthrax bacillus (Bacillus anthracis) [TaxId: 1392]
d1vrsc_ : (ASP79) (GLU121) [view usage] : b.1.17.1 |Immunoglobulin-like beta-sandwich |Thiol:disulfide interchange protein DsbD, N-terminal domain (DsbD-alpha) |Thiol:disulfide interchange protein DsbD, N-terminal domain (DsbD-alpha) |Thiol:disulfide interchange protein DsbD, N-terminal domain (DsbD-alpha) |Escherichia coli [TaxId: 562]
d2oj5a1 : (LYS414) (THR455) [view usage] : b.21.1.2 |Virus attachment protein globular domain |Virus attachment protein globular domain |Reovirus attachment protein sigma 1 head domain |automated matches |Reovirus sp. [TaxId: 10891]
d2bo9b1 : (GLY49) (GLY93) [view usage] : d.17.1.5 |Cystatin-like |Cystatin/monellin |Latexin-like |Latexin |Human (Homo sapiens) [TaxId: 9606]
d2jp2a_ : (GLY39) (ARG78) [view usage] : b.55.1.0 |PH domain-like barrel |PH domain-like |automated matches |automated matches |Human (Homo sapiens) [TaxId: 9606]
d2bs8a_ : (PHE52) (GLY99) [view usage] : b.2.3.5 |Common fold of diphtheria toxin/transcription factors/cytochrome f |Bacterial adhesins |F17c-type adhesin |automated matches |Escherichia coli [TaxId: 562]
d1x1ga1 : (VAL19) (ASP52) [view usage] : b.55.1.1 |PH domain-like barrel |PH domain-like |Pleckstrin-homology domain (PH domain) |Pleckstrin-2 |Human (Homo sapiens) [TaxId: 9606]
d3p0cb_ : (SER16) (ARG49) [view usage] : d.189.1.0 |PX domain |PX domain |automated matches |automated matches |Human (Homo sapiens) [TaxId: 9606]
d2ys1a_ : (ILE9) (LYS42) [view usage] : b.55.1.1 |PH domain-like barrel |PH domain-like |Pleckstrin-homology domain (PH domain) |automated matches |Human (Homo sapiens) [TaxId: 9606]
d2jnza_ : (LYS26) (GLY61) [view usage] : b.7.3.0 |C2 domain-like |PHL pollen allergen |automated matches |automated matches |Timothy grass (Phleum pratense) [TaxId: 15957]
d1kkea2 : (ARG314) (PRO353) [view usage] : b.21.1.2 |Virus attachment protein globular domain |Virus attachment protein globular domain |Reovirus attachment protein sigma 1 head domain |Reovirus attachment protein sigma 1 head domain |Reovirus [TaxId: 10891]
d3ul5a_ : (ALA62) (GLY104) [view usage] : d.17.1.0 |Cystatin-like |Cystatin/monellin |automated matches |automated matches |Saccharum officinarum [TaxId: 4547]
d1o8pa_ : (ASP72) (SER108) [view usage] : b.18.1.10 |Galactose-binding domain-like |Galactose-binding domain-like |Family 6 carbohydrate binding module, CBM6 |Putative xylanase |Clostridium stercorarium [TaxId: 1510]
d2bz1a_ : (GLN2) (GLY38) [view usage] : c.144.1.1 |RibA-like |RibA-like |RibA-like |GTP cyclohydrolase II, RibA |Escherichia coli [TaxId: 562]
d1m06g_ : (ARG45) (ALA90) [view usage] : b.121.5.1 |Nucleoplasmin-like/VP (viral coat and capsid proteins) |ssDNA viruses |Microviridae-like VP |Microvirus capsid proteins |Bacteriophage alpha3 [TaxId: 10849]
d1x05a1 : (ILE19) (ASP52) [view usage] : b.55.1.1 |PH domain-like barrel |PH domain-like |Pleckstrin-homology domain (PH domain) |Pleckstrin |Human (Homo sapiens) [TaxId: 9606]
d2cska_ : (SER8) (TYR53) [view usage] : d.189.1.0 |PX domain |PX domain |automated matches |automated matches |Human (Homo sapiens) [TaxId: 9606]
d1p4ta_ : (ASP39) (SER87) [view usage] : f.4.1.1 |Transmembrane beta-barrels |OMPA-like |Outer membrane protein |Outer membrane protein NspA |Neisseria meningitidis [TaxId: 487]
d1rj7e_ : (PHE302) (GLY339) [view usage] : b.22.1.1 |TNF-like |TNF-like |TNF-like |Ectodysplasin A, Eda-a1 |Human (Homo sapiens) [TaxId: 9606]
List of distinct SCOP folds where this concept is used (in one or more of its domains):
f.4, b.18, b.121, b.2, b.1, d.17, b.21, b.55, b.22, b.7, c.144, d.189, f.60