Tableau information
Concept source: d4gxvl1 amino acid (a.a.) range (ALA43)(GLY77)
nSSEs in this Concept: 4
String of secondary struct.elems. (SSEs) defining this concept: EEEE
Each SSE's a.a.range: (start resi) (end resi) SSEtype (H=Helix; E=Strand) followed by a numeric SSE ID:
(ALA43) (ILE48) E1
(ASN52) (SER56) E2
(SER63) (GLY68) E3
(THR69) (GLY77) E4
Orientation angles° of SSE-pairs; those in contact shown in bold font
E1
E2 124.5° E2
E3 -69.6° 153.5° E3
E4 100.3° -47.4° 158.7°
Footnote: Inferred from this concept's usages (listed below) was the angular variance of 1σ = ±12.7° about each orientation angle shown above.
Loci of concept usages (shown as a range of a.a. residue ids) in SCOP(v2.05) domains, along with their brief legend taken from SCOP
d1bj3a_ : (SER64) (ALA129) [view usage] : d.169.1.1 |C-type lectin-like |C-type lectin-like |C-type lectin domain |Snake coagglutinin alpha chain |Habu snake (Trimeresurus flavoviridis) [TaxId: 88087]
d1pc0a_ : (GLY17) (VAL56) [view usage] : b.137.1.1 |Rof/RNase P subunit-like |Rof/RNase P subunit-like |RNase P subunit p29-like |Hypothetical protein AF1917 |Archaeoglobus fulgidus [TaxId: 2234]
d2dmka_ : (TRP71) (THR115) [view usage] : b.1.2.0 |Immunoglobulin-like beta-sandwich |Fibronectin type III |automated matches |automated matches |Human (Homo sapiens) [TaxId: 9606]
d4qppb_ : (GLN320) (MET373) [view usage] : c.66.1.0 |S-adenosyl-L-methionine-dependent methyltransferases |S-adenosyl-L-methionine-dependent methyltransferases |automated matches |automated matches |Human (Homo sapiens) [TaxId: 9606]
d4pfta_ : (LEU61) (THR90) [view usage] : c.94.1.1 |Periplasmic binding protein-like II |Periplasmic binding protein-like II |Phosphate binding protein-like |Oligo-peptide binding protein (OPPA) |Thermotoga maritima [TaxId: 2336]
d1czda2 : (THR1177) (ALA1219) [view usage] : d.131.1.2 |DNA clamp |DNA clamp |DNA polymerase processivity factor |gp45 sliding clamp |Bacteriophage T4 [TaxId: 10665]
d4bp0a_ : (ASP170) (PHE206) [view usage] : d.157.1.0 |Metallo-hydrolase/oxidoreductase |Metallo-hydrolase/oxidoreductase |automated matches |automated matches |Pseudomonas aeruginosa [TaxId: 287]
d2i7fa_ : (ASN3) (THR41) [view usage] : b.33.1.0 |ISP domain |ISP domain |automated matches |automated matches |Sphingobium yanoikuyae [TaxId: 13690]
d4qppa_ : (GLN320) (MET373) [view usage] : c.66.1.0 |S-adenosyl-L-methionine-dependent methyltransferases |S-adenosyl-L-methionine-dependent methyltransferases |automated matches |automated matches |Human (Homo sapiens) [TaxId: 9606]
d2hl5c_ : (SER31) (ARG90) [view usage] : b.34.10.1 |SH3-like barrel |Cap-Gly domain |Cap-Gly domain |Dynactin 1 |Human (Homo sapiens) [TaxId: 9606]
d1sr4a_ : (ASN115) (ASP148) [view usage] : b.42.2.1 |beta-Trefoil |Ricin B-like lectins |Ricin B-like |Cytolethal distending toxin subunit A |Haemophilus ducreyi [TaxId: 730]
d1po3a_ : (GLY210) (LEU262) [view usage] : f.4.3.3 |Transmembrane beta-barrels |Porins |Ligand-gated protein channel |Outer membrane transporter FecA |Escherichia coli [TaxId: 562]
d3u5gg_ : (ASP273) (GLN314) [view usage] : i.1.1.1 |Ribosome and ribosomal fragments |Ribosome and ribosomal fragments |Ribosome complexes |Eukaryotic, cytoplasmic (80S ribosome functional complex) |Saccharomyces cerevisiae [TaxId: 559292]
d1slia2 : (GLY277) (THR331) [view usage] : b.68.1.1 |6-bladed beta-propeller |Sialidases |Sialidases (neuraminidases) |Leech intramolecular trans-sialidase, C-terminal domain |North american leech (Macrobdella decora) [TaxId: 6405]
d2bjqa2 : (THR120) (ALA155) [view usage] : b.169.1.1 |MFPT repeat-like |MFPT repeat-like |MFPT repeat |Sperm motility protein MFP2 |Pig roundworm (Ascaris suum), isoform A [TaxId: 6253]
d1eova1 : (LEU167) (PRO201) [view usage] : b.40.4.1 |OB-fold |Nucleic acid-binding proteins |Anticodon-binding domain |Aspartyl-tRNA synthetase (AspRS) |Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
d3vbaa_ : (LEU102) (LYS139) [view usage] : c.8.2.0 |The "swivelling" beta/beta/alpha domain |LeuD/IlvD-like |automated matches |automated matches |Methanocaldococcus jannaschii [TaxId: 243232]
d4pftb_ : (LEU61) (LEU91) [view usage] : c.94.1.1 |Periplasmic binding protein-like II |Periplasmic binding protein-like II |Phosphate binding protein-like |Oligo-peptide binding protein (OPPA) |Thermotoga maritima [TaxId: 2336]
d4bp0b_ : (ASP170) (PHE206) [view usage] : d.157.1.0 |Metallo-hydrolase/oxidoreductase |Metallo-hydrolase/oxidoreductase |automated matches |automated matches |Pseudomonas aeruginosa [TaxId: 287]
d3j39v_ : (SER17) (VAL57) [view usage] : i.1.1.1 |Ribosome and ribosomal fragments |Ribosome and ribosomal fragments |Ribosome complexes |Eukaryotic, cytoplasmic (80S ribosome functional complex) |Drosophila melanogaster [TaxId: 7227]
d2vhla2 : (LEU278) (LEU309) [view usage] : c.1.9.10 |TIM beta/alpha-barrel |Metallo-dependent hydrolases |N-acetylglucosamine-6-phosphate deacetylase, NagA, catalytic domain |N-acetylglucosamine-6-phosphate deacetylase, NagA, catalytic domain |Bacillus subtilis [TaxId: 1423]
d1nppc2 : (GLN200) (ASP241) [view usage] : b.34.5.4 |SH3-like barrel |Translation proteins SH3-like domain |N-utilization substance G protein NusG, C-terminal domain |N-utilization substance G protein NusG, C-terminal domain |Aquifex aeolicus [TaxId: 63363]
d1yllc_ : (PRO13) (ALA57) [view usage] : b.82.1.17 |Double-stranded beta-helix |RmlC-like cupins |PA5104-like |automated matches |Pseudomonas aeruginosa [TaxId: 208964]
d1dppa_ : (LEU36) (HIS66) [view usage] : c.94.1.1 |Periplasmic binding protein-like II |Periplasmic binding protein-like II |Phosphate binding protein-like |Dipeptide-binding protein |Escherichia coli [TaxId: 562]
d1w7ia1 : (ALA11) (ASP53) [view usage] : b.34.3.0 |SH3-like barrel |Myosin S1 fragment, N-terminal domain |automated matches |automated matches |Chicken (Gallus gallus) [TaxId: 9031]
d1fusa_ : (HIS40) (HIS92) [view usage] : d.1.1.4 |Microbial ribonucleases |Microbial ribonucleases |Fungal ribonucleases |RNase F1 |Fusarium moniliforme [TaxId: 117187]
d4bp0c_ : (ASP170) (PHE206) [view usage] : d.157.1.0 |Metallo-hydrolase/oxidoreductase |Metallo-hydrolase/oxidoreductase |automated matches |automated matches |Pseudomonas aeruginosa [TaxId: 287]
d1v7lb_ : (PRO101) (GLU135) [view usage] : c.8.2.1 |The "swivelling" beta/beta/alpha domain |LeuD/IlvD-like |LeuD-like |Isopropylmalate isomerase LeuD |Pyrococcus horikoshii [TaxId: 53953]
d2k5ua_ : (VAL42) (SER76) [view usage] : c.37.1.8 |P-loop containing nucleoside triphosphate hydrolases |P-loop containing nucleoside triphosphate hydrolases |G proteins |automated matches |Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
d4okcb_ : (ALA7) (ALA38) [view usage] : b.78.1.0 |beta-Prism II |alpha-D-mannose-specific plant lectins |automated matches |automated matches |Mycobacterium smegmatis [TaxId: 246196]
d2jzaa1 : (GLN3) (SER43) [view usage] : b.33.1.3 |ISP domain |ISP domain |NirD-like |NADH-nitrite reductase small subunit NirD |Erwinia carotovora [TaxId: 554]
d1vs6k1 : (THR6) (VAL62) [view usage] : b.39.1.1 |Ribosomal protein L14 |Ribosomal protein L14 |Ribosomal protein L14 |Ribosomal protein L14 |Escherichia coli [TaxId: 562]
d3flga_ : (VAL25) (GLU67) [view usage] : b.34.9.2 |SH3-like barrel |Tudor/PWWP/MBT |PWWP domain |DNA methyltransferase DNMT3B |Human (Homo sapiens) [TaxId: 9606]
d2btla1 : (PHE36) (PRO88) [view usage] : b.148.1.1 |Coronavirus RNA-binding domain |Coronavirus RNA-binding domain |Coronavirus RNA-binding domain |Nucleocapsid protein |Avian infectious bronchitis virus [TaxId: 11120]
d3u5ev_ : (GLY16) (LEU54) [view usage] : i.1.1.1 |Ribosome and ribosomal fragments |Ribosome and ribosomal fragments |Ribosome complexes |Eukaryotic, cytoplasmic (80S ribosome functional complex) |Saccharomyces cerevisiae [TaxId: 559292]
d1yeza1 : (GLN22) (ARG51) [view usage] : b.40.4.12 |OB-fold |Nucleic acid-binding proteins |TRAM domain |Hypothetical protein MM1357 |Methanosarcina mazei [TaxId: 2209]
List of distinct SCOP folds where this concept is used (in one or more of its domains):
b.68, c.1, b.82, c.94, i.1, d.157, c.66, f.4, b.40, c.37, d.169, b.1, b.42, c.8, d.131, b.34, d.1, b.33, b.148, b.78,
b.137, b.169, b.39