Tableau information
Concept source: d2ou7a_ amino acid (a.a.) range (GLU42)(GLU69)
nSSEs in this Concept: 4
String of secondary struct.elems. (SSEs) defining this concept: EEEE
Each SSE's a.a.range: (start resi) (end resi) SSEtype (H=Helix; E=Strand) followed by a numeric SSE ID:
(GLU42) (ASP46) E1
(ARG50) (VAL54) E2
(ARG57) (GLY63) E3
(PHE64) (GLU69) E4
Orientation angles° of SSE-pairs; those in contact shown in bold font
E1
E2 159.5° E2
E3 75.4° -100.5° E3
E4 -92.2° 86.0° 160.9°
Footnote: Inferred from this concept's usages (listed below) was the angular variance of 1σ = ±11.4° about each orientation angle shown above.
Loci of concept usages (shown as a range of a.a. residue ids) in SCOP(v2.05) domains, along with their brief legend taken from SCOP
d2x4mb_ : (ALA180) (GLY221) [view usage] : f.4.4.0 |Transmembrane beta-barrels |OMPT-like |automated matches |automated matches |Yersinia pestis [TaxId: 632]
d1eo2a_ : (GLY112) (PHE145) [view usage] : b.3.6.1 |Prealbumin-like |Aromatic compound dioxygenase |Aromatic compound dioxygenase |Protocatechuate-3,4-dioxygenase, alpha chain |Acinetobacter calcoaceticus, adp1 [TaxId: 471]
d2woua_ : (HIS317) (LEU352) [view usage] : d.144.1.7 |Protein kinase-like (PK-like) |Protein kinase-like (PK-like) |Protein kinases, catalytic subunit |Type I TGF-beta receptor R4 |Human (Homo sapiens) [TaxId: 9606]
d1d8ta2 : (SER306) (LEU343) [view usage] : b.44.1.1 |Elongation factor/aminomethyltransferase common domain |EF-Tu/eEF-1alpha/eIF2-gamma C-terminal domain |EF-Tu/eEF-1alpha/eIF2-gamma C-terminal domain |Elongation factor Tu (EF-Tu) |Escherichia coli [TaxId: 562]
d3bz1o_ : (PRO131) (SER176) [view usage] : f.4.1.4 |Transmembrane beta-barrels |OMPA-like |PsbO-like |automated matches |Thermosynechococcus elongatus [TaxId: 32046]
d2nqka2 : (GLY83) (ALA128) [view usage] : b.103.1.1 |MoeA N-terminal region -like |MoeA N-terminal region -like |MoeA N-terminal region -like |Molybdenum cofactor biosynthesis protein MoeA, N-terminal and linker domains |Escherichia coli [TaxId: 562]
d1dg1g2 : (SER306) (PRO344) [view usage] : b.44.1.1 |Elongation factor/aminomethyltransferase common domain |EF-Tu/eEF-1alpha/eIF2-gamma C-terminal domain |EF-Tu/eEF-1alpha/eIF2-gamma C-terminal domain |Elongation factor Tu (EF-Tu) |Escherichia coli [TaxId: 562]
d2ou7a_ : (GLU42) (GLU69) [view usage] : d.144.1.0 |Protein kinase-like (PK-like) |Protein kinase-like (PK-like) |automated matches |automated matches |Human (Homo sapiens) [TaxId: 9606]
d4njta_ : (GLU21) (GLY49) [view usage] : b.50.1.1 |Acid proteases |Acid proteases |Retroviral protease (retropepsin) |Human immunodeficiency virus type 1 protease |Human immunodeficiency virus 1 [TaxId: 11676]
d3thba_ : (GLU42) (GLU69) [view usage] : d.144.1.0 |Protein kinase-like (PK-like) |Protein kinase-like (PK-like) |automated matches |automated matches |Human (Homo sapiens) [TaxId: 9606]
d2buxa1 : (GLY112) (PHE145) [view usage] : b.3.6.1 |Prealbumin-like |Aromatic compound dioxygenase |Aromatic compound dioxygenase |Protocatechuate-3,4-dioxygenase, alpha chain |Acinetobacter calcoaceticus, adp1 [TaxId: 471]
d1tyea_ : (ASP74) (TRP110) [view usage] : b.69.8.1 |7-bladed beta-propeller |Integrin alpha N-terminal domain |Integrin alpha N-terminal domain |Integrin alpha N-terminal domain |Human (Homo sapiens), isoform IIb [TaxId: 9606]
d2yaca_ : (GLU42) (GLU69) [view usage] : d.144.1.0 |Protein kinase-like (PK-like) |Protein kinase-like (PK-like) |automated matches |automated matches |Human (Homo sapiens) [TaxId: 9606]
d4iw3b3 : (ALA310) (PRO348) [view usage] : b.44.1.0 |Elongation factor/aminomethyltransferase common domain |EF-Tu/eEF-1alpha/eIF2-gamma C-terminal domain |automated matches |automated matches |Pseudomonas putida [TaxId: 160488]
d3fc2a_ : (GLU42) (GLU69) [view usage] : d.144.1.0 |Protein kinase-like (PK-like) |Protein kinase-like (PK-like) |automated matches |automated matches |Human (Homo sapiens) [TaxId: 9606]
d3q4ta_ : (GLU305) (PHE341) [view usage] : d.144.1.0 |Protein kinase-like (PK-like) |Protein kinase-like (PK-like) |automated matches |automated matches |Human (Homo sapiens) [TaxId: 9606]
d3q4ub_ : (HIS320) (LEU355) [view usage] : d.144.1.7 |Protein kinase-like (PK-like) |Protein kinase-like (PK-like) |Protein kinases, catalytic subunit |automated matches |Human (Homo sapiens) [TaxId: 9606]
d1s1iu_ : (ASP54) (ASP83) [view usage] : i.1.1.1 |Ribosome and ribosomal fragments |Ribosome and ribosomal fragments |Ribosome complexes |Eukaryotic, cytoplasmic (80S ribosome functional complex) |Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
d3soca_ : (GLU305) (PHE341) [view usage] : d.144.1.0 |Protein kinase-like (PK-like) |Protein kinase-like (PK-like) |automated matches |automated matches |Human (Homo sapiens) [TaxId: 9606]
d1ng2a1 : (ALA165) (LYS199) [view usage] : b.34.2.1 |SH3-like barrel |SH3-domain |SH3-domain |p47pox (neutrophil cytosolic factor 1) |Human (Homo sapiens) [TaxId: 9606]
d2wt9b_ : (PHE73) (TYR123) [view usage] : c.33.1.0 |Isochorismatase-like hydrolases |Isochorismatase-like hydrolases |automated matches |automated matches |Acinetobacter baumannii [TaxId: 509173]
d2wtaa_ : (GLU74) (TYR123) [view usage] : c.33.1.0 |Isochorismatase-like hydrolases |Isochorismatase-like hydrolases |automated matches |automated matches |Acinetobacter baumannii [TaxId: 509173]
d4a17b_ : (ARG26) (GLU80) [view usage] : i.1.1.2 |Ribosome and ribosomal fragments |Ribosome and ribosomal fragments |Large subunit |Eukaryotic, cytoplasmic (60S subunit) |Tetrahymena thermophila [TaxId: 5911]
d1kxla_ : (ASP10) (ASP51) [view usage] : b.40.4.3 |OB-fold |Nucleic acid-binding proteins |Single strand DNA-binding domain, SSB |CDC13 ssDNA-binding domain |Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
d1r5ba2 : (CYS579) (ILE620) [view usage] : b.44.1.1 |Elongation factor/aminomethyltransferase common domain |EF-Tu/eEF-1alpha/eIF2-gamma C-terminal domain |EF-Tu/eEF-1alpha/eIF2-gamma C-terminal domain |Eukaryotic peptide chain release factor ERF2, C-terminal domain |Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]
d1eo9a_ : (GLY112) (PHE145) [view usage] : b.3.6.1 |Prealbumin-like |Aromatic compound dioxygenase |Aromatic compound dioxygenase |Protocatechuate-3,4-dioxygenase, alpha chain |Acinetobacter calcoaceticus, adp1 [TaxId: 471]
d2wt9a_ : (GLU74) (TYR123) [view usage] : c.33.1.0 |Isochorismatase-like hydrolases |Isochorismatase-like hydrolases |automated matches |automated matches |Acinetobacter baumannii [TaxId: 509173]
d1t3ea2 : (THR400) (VAL449) [view usage] : b.103.1.1 |MoeA N-terminal region -like |MoeA N-terminal region -like |MoeA N-terminal region -like |Gephyrin, domains 3 and 4 |Norway rat (Rattus norvegicus) [TaxId: 10116]
d2nqub2 : (GLY88) (ALA128) [view usage] : b.103.1.1 |MoeA N-terminal region -like |MoeA N-terminal region -like |MoeA N-terminal region -like |Molybdenum cofactor biosynthesis protein MoeA, N-terminal and linker domains |Escherichia coli [TaxId: 562]
List of distinct SCOP folds where this concept is used (in one or more of its domains):
b.69, i.1, b.50, f.4, d.144, b.40, c.33, b.34, b.3, b.44, b.103