Tableau information
Concept source: d1lvba_ amino acid (a.a.) range (HIS20)(THR43)
nSSEs in this Concept: 4
String of secondary struct.elems. (SSEs) defining this concept: EEEE
Each SSE's a.a.range: (start resi) (end resi) SSEtype (H=Helix; E=Strand) followed by a numeric SSE ID:
(HIS20) (SER25) E1
(GLY27) (LEU32) E2
(LEU32) (GLY38) E3
(PRO39) (THR43) E4
Orientation angles° of SSE-pairs; those in contact shown in bold font
E1
E2 154.4° E2
E3 112.9° 63.2° E3
E4 -79.3° 95.1° 152.8°
Footnote: Inferred from this concept's usages (listed below) was the angular variance of 1σ = ±10.4° about each orientation angle shown above.
Loci of concept usages (shown as a range of a.a. residue ids) in SCOP(v2.05) domains, along with their brief legend taken from SCOP
d2a5kb_ : (VAL18) (PRO39) [view usage] : b.47.1.4 |Trypsin-like serine proteases |Trypsin-like serine proteases |Viral cysteine protease of trypsin fold |Coronavirus main proteinase (3Cl-pro, putative coronavirus nsp2) |SARS coronavirus [TaxId: 227859]
d2zhra_ : (GLY13) (ALA43) [view usage] : b.50.1.2 |Acid proteases |Acid proteases |Pepsin-like |beta-secretase (memapsin) |Human (Homo sapiens) [TaxId: 9606]
d1tula_ : (ILE11) (VAL47) [view usage] : b.85.5.1 |beta-clip |Tlp20, baculovirus telokin-like protein |Tlp20, baculovirus telokin-like protein |Tlp20, baculovirus telokin-like protein |AcMNPV (Autographa californica nuclear polyhedrosis virus) [TaxId: 46015]
d1wofa_ : (SER65) (VAL91) [view usage] : b.47.1.4 |Trypsin-like serine proteases |Trypsin-like serine proteases |Viral cysteine protease of trypsin fold |automated matches |SARS coronavirus [TaxId: 227859]
d1gska2 : (ASP190) (ASN236) [view usage] : b.6.1.3 |Cupredoxin-like |Cupredoxins |Multidomain cupredoxins |Spore coat protein A, CotA |Bacillus subtilis [TaxId: 1423]
d3v7ta_ : (GLN30) (THR56) [view usage] : b.47.1.2 |Trypsin-like serine proteases |Trypsin-like serine proteases |Eukaryotic proteases |beta-Tryptase |Human (Homo sapiens) [TaxId: 9606]
d4na7a_ : (GLN30) (THR54) [view usage] : b.47.1.0 |Trypsin-like serine proteases |Trypsin-like serine proteases |automated matches |automated matches |Human (Homo sapiens) [TaxId: 9606]
d4e04b1 : (VAL87) (PRO121) [view usage] : d.110.3.0 |Profilin-like |PYP-like sensor domain (PAS domain) |automated matches |automated matches |Rhodopseudomonas palustris [TaxId: 258594]
d1d7ca_ : (SER4) (PHE31) [view usage] : b.1.9.1 |Immunoglobulin-like beta-sandwich |CBD9-like |Cytochrome domain of cellobiose dehydrogenase |Cytochrome domain of cellobiose dehydrogenase |Basidomycetes fungus (Phanerochaete chrysosporium) [TaxId: 5306]
d1qtua_ : (GLU77) (LYS104) [view usage] : b.63.1.1 |Oncogene products |Oncogene products |Oncogene products |p13-MTCP1 |Human (Homo sapiens) [TaxId: 9606]
d2mc2a_ : (GLU19) (THR52) [view usage] : b.42.6.2 |beta-Trefoil |MIR domain |Ryanodine receptor N-terminal-like |automated matches |Mouse (Mus musculus) [TaxId: 10090]
d2coaa1 : (VAL14) (ASN41) [view usage] : b.55.1.1 |PH domain-like barrel |PH domain-like |Pleckstrin-homology domain (PH domain) |Protein kinase c, d2 type |Human (Homo sapiens) [TaxId: 9606]
d2rfra1 : (HIS101) (LEU140) [view usage] : d.17.4.28 |Cystatin-like |NTF2-like |BaiE/LinA-like |Uncharacterized protein Saro3722 |Novosphingobium aromaticivorans [TaxId: 48935]
d1bvea_ : (ARG8) (GLU34) [view usage] : b.50.1.1 |Acid proteases |Acid proteases |Retroviral protease (retropepsin) |Human immunodeficiency virus type 1 protease |Human immunodeficiency virus type 1 [TaxId: 11676]
d2uvma_ : (GLY10) (LYS39) [view usage] : b.55.1.1 |PH domain-like barrel |PH domain-like |Pleckstrin-homology domain (PH domain) |automated matches |Human (Homo sapiens) [TaxId: 9606]
d3f9fa_ : (VAL18) (PRO39) [view usage] : b.47.1.4 |Trypsin-like serine proteases |Trypsin-like serine proteases |Viral cysteine protease of trypsin fold |Coronavirus main proteinase (3Cl-pro, putative coronavirus nsp2) |SARS coronavirus [TaxId: 227859]
d1e4kc1 : (ASP1) (PHE40) [view usage] : b.1.1.4 |Immunoglobulin-like beta-sandwich |Immunoglobulin |I set domains |Fc gamma receptor ectodomain (CD32) |Human (Homo sapiens), III [TaxId: 9606]
d1ckma1 : (GLY268) (GLN293) [view usage] : b.40.4.6 |OB-fold |Nucleic acid-binding proteins |DNA ligase/mRNA capping enzyme postcatalytic domain |RNA guanylyltransferase (mRNA capping enzyme) |Chlorella virus PBCV-1 [TaxId: 10506]
d2z4fa_ : (LYS119) (PRO157) [view usage] : b.18.1.0 |Galactose-binding domain-like |Galactose-binding domain-like |automated matches |automated matches |Human (Homo sapiens) [TaxId: 9606]
d1o6ab_ : (VAL114) (THR140) [view usage] : b.139.1.1 |Surface presentation of antigens (SPOA) |Surface presentation of antigens (SPOA) |Surface presentation of antigens (SPOA) |Putative flagelar motor switch protein FliN |Thermotoga maritima [TaxId: 2336]
d1ywua1 : (PRO56) (CYS87) [view usage] : b.45.2.1 |Split barrel-like |PilZ domain-like |PilZ domain |Hypothetical protein PA4608 |Pseudomonas aeruginosa [TaxId: 287]
d3csea_ : (LEU187) (LYS216) [view usage] : c.71.1.1 |Dihydrofolate reductase-like |Dihydrofolate reductase-like |Dihydrofolate reductases |Dihydrofolate reductases, eukaryotic type |Candida glabrata [TaxId: 5478]
d1mkea1 : (VAL47) (ASP84) [view usage] : b.55.1.4 |PH domain-like barrel |PH domain-like |Enabled/VASP homology 1 domain (EVH1 domain) |Actin regulatory protein WASP |Norway rat (Rattus norvegicus) [TaxId: 10116]
d1d7ba_ : (SER4) (PHE31) [view usage] : b.1.9.1 |Immunoglobulin-like beta-sandwich |CBD9-like |Cytochrome domain of cellobiose dehydrogenase |Cytochrome domain of cellobiose dehydrogenase |Basidomycetes fungus (Phanerochaete chrysosporium) [TaxId: 5306]
d3aw1a_ : (VAL18) (PRO39) [view usage] : b.47.1.4 |Trypsin-like serine proteases |Trypsin-like serine proteases |Viral cysteine protease of trypsin fold |Coronavirus main proteinase (3Cl-pro, putative coronavirus nsp2) |SARS coronavirus [TaxId: 227859]
d4h98a_ : (THR188) (LYS216) [view usage] : c.71.1.1 |Dihydrofolate reductase-like |Dihydrofolate reductase-like |Dihydrofolate reductases |Dihydrofolate reductases, eukaryotic type |Candida glabrata [TaxId: 284593]
d1tuca_ : (GLU22) (PRO54) [view usage] : b.34.2.1 |SH3-like barrel |SH3-domain |SH3-domain |alpha-Spectrin, SH3 domain |Chicken (Gallus gallus) [TaxId: 9031]
d2qcya_ : (MET17) (PRO39) [view usage] : b.47.1.4 |Trypsin-like serine proteases |Trypsin-like serine proteases |Viral cysteine protease of trypsin fold |Coronavirus main proteinase (3Cl-pro, putative coronavirus nsp2) |SARS coronavirus [TaxId: 227859]
d1d06a_ : (VAL216) (THR251) [view usage] : d.110.3.2 |Profilin-like |PYP-like sensor domain (PAS domain) |Heme-binding PAS domain |Histidine kinase FixL heme domain |Rhizobium meliloti [TaxId: 382]
d1m9sa2 : (THR396) (LYS452) [view usage] : b.34.11.1 |SH3-like barrel |Prokaryotic SH3-related domain |GW domain |Internalin B, C-terminal domains |Listeria monocytogenes [TaxId: 1639]
d1efta2 : (PRO340) (LYS376) [view usage] : b.44.1.1 |Elongation factor/aminomethyltransferase common domain |EF-Tu/eEF-1alpha/eIF2-gamma C-terminal domain |EF-Tu/eEF-1alpha/eIF2-gamma C-terminal domain |Elongation factor Tu (EF-Tu) |Thermus aquaticus [TaxId: 271]
d1jlxa1 : (ILE6) (SER61) [view usage] : b.42.3.1 |beta-Trefoil |Agglutinin |Agglutinin |Agglutinin |Love-lies-bleeding (Amaranthus caudatus) [TaxId: 3567]
d4jcma4 : (ALA634) (SER671) [view usage] : b.3.1.0 |Prealbumin-like |Starch-binding domain-like |automated matches |automated matches |Bacillus clarkii [TaxId: 79879]
d2bdga_ : (TRP29) (ALA55) [view usage] : b.47.1.0 |Trypsin-like serine proteases |Trypsin-like serine proteases |automated matches |automated matches |Human (Homo sapiens) [TaxId: 9606]
d4os1a_ : (ALA32) (ALA55) [view usage] : b.47.1.2 |Trypsin-like serine proteases |Trypsin-like serine proteases |Eukaryotic proteases |Urokinase-type plasminogen activator (LMW U-PA), catalytic domain |Human (Homo sapiens) [TaxId: 9606]
d3p53a3 : (CYS260) (THR309) [view usage] : b.42.5.0 |beta-Trefoil |Actin-crosslinking proteins |automated matches |automated matches |Human (Homo sapiens) [TaxId: 9606]
d1bywa_ : (ALA97) (VAL131) [view usage] : d.110.3.6 |Profilin-like |PYP-like sensor domain (PAS domain) |Flavin-binding PAS domain |Erg potassium channel, N-terminal domain |Human (Homo sapiens) [TaxId: 9606]
d1znca_ : (GLU106) (ALA150) [view usage] : b.74.1.1 |Carbonic anhydrase |Carbonic anhydrase |Carbonic anhydrase |Carbonic anhydrase |Human (Homo sapiens), isozyme IV [TaxId: 9606]
d3ea8a_ : (VAL18) (PRO39) [view usage] : b.47.1.4 |Trypsin-like serine proteases |Trypsin-like serine proteases |Viral cysteine protease of trypsin fold |automated matches |SARS coronavirus [TaxId: 227859]
d3atwa_ : (VAL18) (PRO39) [view usage] : b.47.1.4 |Trypsin-like serine proteases |Trypsin-like serine proteases |Viral cysteine protease of trypsin fold |Coronavirus main proteinase (3Cl-pro, putative coronavirus nsp2) |SARS coronavirus [TaxId: 227859]
d2o8wa_ : (ALA32) (SER54) [view usage] : b.47.1.2 |Trypsin-like serine proteases |Trypsin-like serine proteases |Eukaryotic proteases |automated matches |Human (Homo sapiens) [TaxId: 9606]
d2cjsa1 : (ILE70) (ASP115) [view usage] : b.7.1.1 |C2 domain-like |C2 domain (Calcium/lipid-binding domain, CaLB) |PLC-like (P variant) |Unc-13 homolog A |Norway rat (Rattus norvegicus) [TaxId: 10116]
d4fsla_ : (GLY61) (ALA91) [view usage] : b.50.1.2 |Acid proteases |Acid proteases |Pepsin-like |beta-secretase (memapsin) |Human (Homo sapiens) [TaxId: 9606]
d1o6aa_ : (GLY111) (THR140) [view usage] : b.139.1.1 |Surface presentation of antigens (SPOA) |Surface presentation of antigens (SPOA) |Surface presentation of antigens (SPOA) |Putative flagelar motor switch protein FliN |Thermotoga maritima [TaxId: 2336]
d1k5db_ : (LYS54) (ARG92) [view usage] : b.55.1.3 |PH domain-like barrel |PH domain-like |Ran-binding domain |Ran-binding protein 1, Ranbp1 |Human (Homo sapiens) [TaxId: 9606]
List of distinct SCOP folds where this concept is used (in one or more of its domains):
b.74, b.47, b.50, b.40, b.18, b.6, c.71, b.85, b.1, b.45, d.110, b.42, d.17, b.55, b.34, b.7, b.3, b.44, b.63, b.139