Tableau information
Concept source: d1ltla_ amino acid (a.a.) range (VAL213)(PHE241)
nSSEs in this Concept: 4
String of secondary struct.elems. (SSEs) defining this concept: EEEE
Each SSE's a.a.range: (start resi) (end resi) SSEtype (H=Helix; E=Strand) followed by a numeric SSE ID:
(VAL213) (GLY217) E1
(LEU219) (ARG223) E2
(LYS231) (ASN237) E3
(ASN237) (PHE241) E4
Orientation angles° of SSE-pairs; those in contact shown in bold font
E1
E2 71.6° E2
E3 96.1° 140.3° E3
E4 167.1° -117.8° -81.8°
Footnote: Inferred from this concept's usages (listed below) was the angular variance of 1σ = ±11.4° about each orientation angle shown above.
Loci of concept usages (shown as a range of a.a. residue ids) in SCOP(v2.05) domains, along with their brief legend taken from SCOP
d2e2dc_ : (ARG1020) (LYS1054) [view usage] : b.40.3.1 |OB-fold |TIMP-like |Tissue inhibitor of metalloproteinases, TIMP |TIMP-2 |Cow (Bos taurus) [TaxId: 9913]
d3pmzf_ : (PRO98) (MET126) [view usage] : b.96.1.0 |Nicotinic receptor ligand binding domain-like |Nicotinic receptor ligand binding domain-like |automated matches |automated matches |California sea hare (Aplysia californica) [TaxId: 6500]
d2p12a1 : (ASP83) (ARG110) [view usage] : b.175.1.1 |FomD barrel-like |FomD-like |FomD-like |Hypothetical protein RHA1_ro00977 |Rhodococcus sp. RHA1 [TaxId: 101510]
d3siob_ : (PRO98) (MET126) [view usage] : b.96.1.0 |Nicotinic receptor ligand binding domain-like |Nicotinic receptor ligand binding domain-like |automated matches |automated matches |California sea hare (Aplysia californica) [TaxId: 6500]
d2vl6a_ : (ARG230) (VAL264) [view usage] : b.40.4.0 |OB-fold |Nucleic acid-binding proteins |automated matches |automated matches |Sulfolobus solfataricus [TaxId: 2287]
d1igna1 : (GLU416) (ILE445) [view usage] : a.4.1.6 |DNA/RNA-binding 3-helical bundle |Homeodomain-like |DNA-binding domain of rap1 |DNA-binding domain of rap1 |Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
d1ltla_ : (VAL213) (PHE241) [view usage] : b.40.4.11 |OB-fold |Nucleic acid-binding proteins |DNA replication initiator (cdc21/cdc54) N-terminal domain |DNA replication initiator (cdc21/cdc54) N-terminal domain |Methanobacterium thermoautotrophicum [TaxId: 145262]
d3rlna2 : (ASP731) (VAL760) [view usage] : b.40.16.1 |OB-fold |HIN-2000 domain-like |HIN-200/IF120x domain |Gamma-interferon-inducible protein Ifi-16 |Human (Homo sapiens) [TaxId: 9606]
d2pqac_ : (VAL126) (PRO148) [view usage] : b.40.4.3 |OB-fold |Nucleic acid-binding proteins |Single strand DNA-binding domain, SSB |Replication protein A 32 KDa subunit (RPA32) fragment |Human (Homo sapiens) [TaxId: 9606]
d3cmbb_ : (GLY75) (ASN107) [view usage] : d.347.1.1 |Acetoacetate decarboxylase-like |Acetoacetate decarboxylase-like |Acetoacetate decarboxylase-like |Acetoacetate decarboxylase |Methanoculleus marisnigri [TaxId: 2198]
d2ij0a1 : (ASN65) (THR91) [view usage] : b.40.2.2 |OB-fold |Bacterial enterotoxins |Superantigen toxins, N-terminal domain |Toxic shock syndrome toxin-1 (TSST-1) |Staphylococcus aureus [TaxId: 1280]
d3rloa2 : (ASP731) (VAL760) [view usage] : b.40.16.1 |OB-fold |HIN-2000 domain-like |HIN-200/IF120x domain |Gamma-interferon-inducible protein Ifi-16 |Human (Homo sapiens) [TaxId: 9606]
d1bcpc1 : (ARG164) (LEU191) [view usage] : b.40.2.1 |OB-fold |Bacterial enterotoxins |Bacterial AB5 toxins, B-subunits |Pertussis toxin S2/S3 subunits, C-terminal domain |Bordetella pertussis [TaxId: 520]
d3sh1d_ : (PRO98) (MET126) [view usage] : b.96.1.0 |Nicotinic receptor ligand binding domain-like |Nicotinic receptor ligand binding domain-like |automated matches |automated matches |California sea hare (Aplysia californica) [TaxId: 6500]
d2br7a_ : (PRO96) (MET124) [view usage] : b.96.1.0 |Nicotinic receptor ligand binding domain-like |Nicotinic receptor ligand binding domain-like |automated matches |automated matches |California sea hare (Aplysia californica) [TaxId: 6500]
d1y2ia_ : (ASP75) (ILE109) [view usage] : d.230.5.1 |Dodecin subunit-like |YbjQ-like |YbjQ-like |Hypothetical protein YbjQ |Shigella flexneri [TaxId: 623]
d1ww9a2 : (LEU202) (PHE239) [view usage] : d.129.3.3 |TBP-like |Bet v1-like |Ring hydroxylating alpha subunit catalytic domain |Terminal oxygenase component of carbazole CarAa |Janthinobacterium sp. J3 [TaxId: 213804]
d2hgjp1 : (GLY62) (ALA107) [view usage] : d.41.4.2 |alpha/beta-Hammerhead |Ribosomal protein L16p/L10e |Ribosomal protein L16p |Ribosomal protein L16p |Thermus thermophilus [TaxId: 274]
d2byrb_ : (PRO98) (MET126) [view usage] : b.96.1.0 |Nicotinic receptor ligand binding domain-like |Nicotinic receptor ligand binding domain-like |automated matches |automated matches |California sea hare (Aplysia californica) [TaxId: 6500]
d1bcpb1 : (ARG164) (ILE191) [view usage] : b.40.2.1 |OB-fold |Bacterial enterotoxins |Bacterial AB5 toxins, B-subunits |Pertussis toxin S2/S3 subunits, C-terminal domain |Bordetella pertussis [TaxId: 520]
d1fnua1 : (ASN75) (GLU107) [view usage] : b.40.2.2 |OB-fold |Bacterial enterotoxins |Superantigen toxins, N-terminal domain |Streptococcal pyrogenic exotoxin A1 |Streptococcus pyogenes [TaxId: 1314]
d4dpgb1 : (ILE182) (SER207) [view usage] : b.40.4.0 |OB-fold |Nucleic acid-binding proteins |automated matches |automated matches |Human (Homo sapiens) [TaxId: 9606]
d3bjub1 : (ILE182) (SER207) [view usage] : b.40.4.0 |OB-fold |Nucleic acid-binding proteins |automated matches |automated matches |Human (Homo sapiens) [TaxId: 9606]
d3cmba1 : (GLY75) (ASN107) [view usage] : d.347.1.1 |Acetoacetate decarboxylase-like |Acetoacetate decarboxylase-like |Acetoacetate decarboxylase-like |Acetoacetate decarboxylase |Methanoculleus marisnigri [TaxId: 2198]
d2z7aa_ : (THR104) (GLY136) [view usage] : d.17.4.3 |Cystatin-like |NTF2-like |Ketosteroid isomerase-like |Hypothetical protein Rv0760c |Mycobacterium tuberculosis H37Rv [TaxId: 83332]
d1wlga_ : (GLN313) (SER363) [view usage] : b.152.1.1 |Flagellar hook protein flgE |Flagellar hook protein flgE |Flagellar hook protein flgE |Flagellar hook protein flgE |Salmonella typhimurium [TaxId: 90371]
d1g24a_ : (SER221) (ILE248) [view usage] : d.166.1.1 |ADP-ribosylation |ADP-ribosylation |ADP-ribosylating toxins |Exoenzyme c3 |Clostridium botulinum [TaxId: 1491]
d2nqya_ : (ASP175) (ILE201) [view usage] : b.29.1.11 |Concanavalin A-like lectins/glucanases |Concanavalin A-like lectins/glucanases |Xylanase/endoglucanase 11/12 |automated matches |Bacillus sp. [TaxId: 1409]
d1yppa_ : (ILE119) (LEU146) [view usage] : b.40.5.1 |OB-fold |Inorganic pyrophosphatase |Inorganic pyrophosphatase |Inorganic pyrophosphatase |Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
List of distinct SCOP folds where this concept is used (in one or more of its domains):
b.29, d.129, b.40, d.166, b.96, d.347, d.17, d.41, a.4, b.152, d.230, b.175