Tableau information
Concept source: d1g99a1 amino acid (a.a.) range (MET1)(LYS45)
nSSEs in this Concept: 4
String of secondary struct.elems. (SSEs) defining this concept: EEEE
Each SSE's a.a.range: (start resi) (end resi) SSEtype (H=Helix; E=Strand) followed by a numeric SSE ID:
(MET1) (SER10) E1
(SER11) (ASP19) E2
(GLU23) (ARG33) E3
(SER39) (LYS45) E4
Orientation angles° of SSE-pairs; those in contact shown in bold font
E1
E2 168.4° E2
E3 -24.2° 166.8° E3
E4 149.8° -19.1° 166.5°
Footnote: Inferred from this concept's usages (listed below) was the angular variance of 1σ = ±8.2° about each orientation angle shown above.
Loci of concept usages (shown as a range of a.a. residue ids) in SCOP(v2.05) domains, along with their brief legend taken from SCOP
d2lfoa_ : (LEU89) (ARG124) [view usage] : b.60.1.2 |Lipocalins |Lipocalins |Fatty acid binding protein-like |Liver fatty acid binding protein |Chicken (Gallus gallus) [TaxId: 9031]
d3elgb_ : (ALA49) (CYS86) [view usage] : d.98.2.1 |BLIP-like |BT0923-like |BT0923-like |Putative periplasmic protein BVU2443 |Bacteroides vulgatus [TaxId: 821]
d1emwa_ : (MET1) (ASP52) [view usage] : d.27.1.1 |Ribosomal protein S16 |Ribosomal protein S16 |Ribosomal protein S16 |Ribosomal protein S16 |Thermus thermophilus [TaxId: 274]
d1kq5a_ : (GLY1438) (SER1471) [view usage] : b.80.5.1 |Single-stranded right-handed beta-helix |C-terminal domain of adenylylcyclase associated protein |C-terminal domain of adenylylcyclase associated protein |C-terminal domain of adenylylcyclase associated protein |Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
d2cu2a1 : (GLU272) (GLY302) [view usage] : b.81.4.1 |Single-stranded left-handed beta-helix |Guanosine diphospho-D-mannose pyrophosphorylase/mannose-6-phosphate isomerase linker domain |Guanosine diphospho-D-mannose pyrophosphorylase/mannose-6-phosphate isomerase linker domain |Putative mannose-1-phosphate guanylyl transferase (GDP)/mannose-6-phosphate isomerase TTHA1750 |Thermus thermophilus [TaxId: 274]
d2ht5a_ : (GLY351) (VAL398) [view usage] : b.68.1.0 |6-bladed beta-propeller |Sialidases |automated matches |automated matches |Influenza A virus [TaxId: 11320]
d2w1va_ : (SER253) (ASP283) [view usage] : d.160.1.0 |Carbon-nitrogen hydrolase |Carbon-nitrogen hydrolase |automated matches |automated matches |Mouse (Mus musculus) [TaxId: 10090]
d1l1ia_ : (ALA6) (ASN29) [view usage] : b.80.2.1 |Single-stranded right-handed beta-helix |Insect cysteine-rich antifreeze protein |Insect cysteine-rich antifreeze protein |Insect cysteine-rich antifreeze protein |Yellow mealworm (Tenebrio molitor) [TaxId: 7067]
d4bgfc_ : (GLY207) (LEU239) [view usage] : d.3.1.5 |Cysteine proteinases |Cysteine proteinases |Arylamine N-acetyltransferase |automated matches |Mycobacterium tuberculosis [TaxId: 83332]
d1dqva2 : (GLY431) (THR485) [view usage] : b.7.1.2 |C2 domain-like |C2 domain (Calcium/lipid-binding domain, CaLB) |Synaptotagmin-like (S variant) |Synaptotagmin III |Norway rat (Rattus norvegicus) [TaxId: 10116]
d1fjgp_ : (ILE4) (ASP52) [view usage] : d.27.1.1 |Ribosomal protein S16 |Ribosomal protein S16 |Ribosomal protein S16 |Ribosomal protein S16 |Thermus thermophilus [TaxId: 274]
d2gbca1 : (GLU409) (SER447) [view usage] : b.70.3.1 |8-bladed beta-propeller |DPP6 N-terminal domain-like |DPP6 N-terminal domain-like |automated matches |Norway rat (Rattus norvegicus) [TaxId: 10116]
d1p4pa_ : (GLY199) (TRP239) [view usage] : b.76.1.1 |open-sided beta-meander |Outer surface protein |Outer surface protein |Outer surface protein B |Lyme disease spirochete (Borrelia burgdorferi) [TaxId: 139]
d1bawa_ : (LEU59) (VAL103) [view usage] : b.6.1.1 |Cupredoxin-like |Cupredoxins |Plastocyanin/azurin-like |Plastocyanin |Phormidium laminosum [TaxId: 32059]
d1y8ca_ : (ASP157) (LYS205) [view usage] : c.66.1.43 |S-adenosyl-L-methionine-dependent methyltransferases |S-adenosyl-L-methionine-dependent methyltransferases |CAC2371-like |Putative methyltransferase CAC2371 |Clostridium acetobutylicum [TaxId: 1488]
d4hzya_ : (GLY351) (VAL398) [view usage] : b.68.1.0 |6-bladed beta-propeller |Sialidases |automated matches |automated matches |Influenza A virus [TaxId: 11320]
d3vb9a_ : (THR380) (ASN451) [view usage] : e.65.1.1 |VPA0735-like |VPA0735-like |VPA0735-like |Hypothetical protein VPA0735 |Vibrio parahaemolyticus [TaxId: 670]
d1po3a_ : (ASP331) (TYR421) [view usage] : f.4.3.3 |Transmembrane beta-barrels |Porins |Ligand-gated protein channel |Outer membrane transporter FecA |Escherichia coli [TaxId: 562]
d3cl2a_ : (GLY351) (ASP396) [view usage] : b.68.1.0 |6-bladed beta-propeller |Sialidases |automated matches |automated matches |Influenza A virus [TaxId: 11320]
d4hx1a2 : (THR182) (VAL231) [view usage] : b.1.1.2 |Immunoglobulin-like beta-sandwich |Immunoglobulin |C1 set domains (antibody constant domain-like) |Class I MHC, alpha-3 domain |Human (Homo sapiens) [TaxId: 9606]
d2htva_ : (GLY351) (ILE398) [view usage] : b.68.1.0 |6-bladed beta-propeller |Sialidases |automated matches |automated matches |Influenza A virus [TaxId: 11320]
d2htva_ : (GLY408) (ASP460) [view usage] : b.68.1.0 |6-bladed beta-propeller |Sialidases |automated matches |automated matches |Influenza A virus [TaxId: 11320]
d1zo0a1 : (ILE94) (THR129) [view usage] : d.108.1.7 |Acyl-CoA N-acyltransferases (Nat) |Acyl-CoA N-acyltransferases (Nat) |Ornithine decarboxylase antizyme-like |Ornithine decarboxylase antizyme |Norway rat (Rattus norvegicus) [TaxId: 10116]
d3b7ea_ : (GLY351) (ASP396) [view usage] : b.68.1.0 |6-bladed beta-propeller |Sialidases |automated matches |automated matches |Influenza A virus [TaxId: 11320]
d1xrua1 : (PHE24) (GLY60) [view usage] : b.82.1.13 |Double-stranded beta-helix |RmlC-like cupins |KduI-like |5-keto-4-deoxyuronate isomerase KduI |Escherichia coli [TaxId: 562]
d2nvna1 : (ARG3) (THR36) [view usage] : d.18.1.3 |ssDNA-binding transcriptional regulator domain |ssDNA-binding transcriptional regulator domain |PMN2A0962/syc2379c-like |Hypothetical protein syc2379_c |Synechococcus elongatus PCC 7942 [TaxId: 1140]
d1ojna2 : (LEU824) (LYS855) [view usage] : b.24.1.1 |Hyaluronate lyase-like, C-terminal domain |Hyaluronate lyase-like, C-terminal domain |Hyaluronate lyase-like, C-terminal domain |Hyaluronate lyase |Pneumococcus (Streptococcus pneumoniae) [TaxId: 1313]
d1cdca_ : (ALA54) (ILE97) [view usage] : b.1.1.1 |Immunoglobulin-like beta-sandwich |Immunoglobulin |V set domains (antibody variable domain-like) |CD2, first domain |Norway rat (Rattus norvegicus) [TaxId: 10116]
d3ckfa_ : (LYS152) (TRP193) [view usage] : b.76.1.1 |open-sided beta-meander |Outer surface protein |Outer surface protein |automated matches |Lyme disease spirochete (Borrelia burgdorferi) [TaxId: 139]
d4agha_ : (PRO47) (THR90) [view usage] : d.18.1.0 |ssDNA-binding transcriptional regulator domain |ssDNA-binding transcriptional regulator domain |automated matches |automated matches |Magnaporthe oryzae [TaxId: 318829]
d3elga1 : (ALA49) (CYS86) [view usage] : d.98.2.1 |BLIP-like |BT0923-like |BT0923-like |Putative periplasmic protein BVU2443 |Bacteroides vulgatus [TaxId: 821]
d4maea_ : (GLY57) (PRO93) [view usage] : b.70.1.0 |8-bladed beta-propeller |Quinoprotein alcohol dehydrogenase-like |automated matches |automated matches |Methylacidiphilum fumariolicum [TaxId: 1156937]
d1xrub_ : (PHE24) (GLY60) [view usage] : b.82.1.13 |Double-stranded beta-helix |RmlC-like cupins |KduI-like |5-keto-4-deoxyuronate isomerase KduI |Escherichia coli [TaxId: 562]
d4hzza_ : (GLY351) (VAL398) [view usage] : b.68.1.0 |6-bladed beta-propeller |Sialidases |automated matches |automated matches |Influenza A virus [TaxId: 11320]
d2gima_ : (LEU59) (VAL103) [view usage] : b.6.1.1 |Cupredoxin-like |Cupredoxins |Plastocyanin/azurin-like |Plastocyanin |Anabaena variabilis [TaxId: 1172]
d1h3ta2 : (GLN342) (THR394) [view usage] : b.1.1.2 |Immunoglobulin-like beta-sandwich |Immunoglobulin |C1 set domains (antibody constant domain-like) |Immunoglobulin heavy chain gamma constant domain 3, CH3-gamma |Human (Homo sapiens) [TaxId: 9606]
d2bpa1_ : (THR5) (PRO72) [view usage] : b.121.5.1 |Nucleoplasmin-like/VP (viral coat and capsid proteins) |ssDNA viruses |Microviridae-like VP |Microvirus capsid proteins |Bacteriophage phi-X174 [TaxId: 10847]
d4od1l1 : (PHE62) (VAL106) [view usage] : b.1.1.0 |Immunoglobulin-like beta-sandwich |Immunoglobulin |automated matches |automated matches |Human (Homo sapiens) [TaxId: 9606]
d4bgfa_ : (GLY207) (LEU239) [view usage] : d.3.1.5 |Cysteine proteinases |Cysteine proteinases |Arylamine N-acetyltransferase |automated matches |Mycobacterium tuberculosis [TaxId: 83332]
d1vr7a_ : (THR43) (CYS83) [view usage] : d.156.1.2 |S-adenosylmethionine decarboxylase |S-adenosylmethionine decarboxylase |Bacterial S-adenosylmethionine decarboxylase |automated matches |Thermotoga maritima [TaxId: 2336]
d1vs7p1 : (ILE4) (ASP53) [view usage] : d.27.1.1 |Ribosomal protein S16 |Ribosomal protein S16 |Ribosomal protein S16 |Ribosomal protein S16 |Escherichia coli [TaxId: 562]
d3l60a_ : (THR308) (PHE362) [view usage] : c.43.1.0 |CoA-dependent acyltransferases |CoA-dependent acyltransferases |automated matches |automated matches |Mycobacterium tuberculosis [TaxId: 1773]
d2r83a2 : (GLY143) (LYS200) [view usage] : b.7.1.2 |C2 domain-like |C2 domain (Calcium/lipid-binding domain, CaLB) |Synaptotagmin-like (S variant) |Synaptogamin I |Human (Homo sapiens) [TaxId: 9606]
d1jjub_ : (MET37) (SER75) [view usage] : b.69.2.2 |7-bladed beta-propeller |YVTN repeat-like/Quinoprotein amine dehydrogenase |Quinohemoprotein amine dehydrogenase B chain |Quinohemoprotein amine dehydrogenase B chain |Paracoccus denitrificans [TaxId: 266]
d2deba1 : (SER588) (TYR628) [view usage] : c.43.1.0 |CoA-dependent acyltransferases |CoA-dependent acyltransferases |automated matches |automated matches |Norway rat (Rattus norvegicus) [TaxId: 10116]
d1ckla1 : (PRO4) (CYS46) [view usage] : g.18.1.1 |Complement control module/SCR domain |Complement control module/SCR domain |Complement control module/SCR domain |CD46 (membrane cofactor protein, MCP) |Human (Homo sapiens) [TaxId: 9606]
d1vqza2 : (GLY113) (ASP152) [view usage] : d.104.1.3 |Class II aaRS and biotin synthetases |Class II aaRS and biotin synthetases |LplA-like |LplA-like protein SP1160, N-terminal domain |Pneumococcus (Streptococcus pneumoniae) [TaxId: 1313]
d1pmya_ : (ASP54) (VAL92) [view usage] : b.6.1.1 |Cupredoxin-like |Cupredoxins |Plastocyanin/azurin-like |Pseudoazurin |Methylobacterium extorquens, strain am1 [TaxId: 408]
d1auna_ : (THR82) (CYS126) [view usage] : b.25.1.1 |Osmotin, thaumatin-like protein |Osmotin, thaumatin-like protein |Osmotin, thaumatin-like protein |Pathogenesis-related protein 5d |Tobacco (Nicotiana tabacum) [TaxId: 4097]
d1al0f_ : (GLU8) (PRO72) [view usage] : b.121.5.1 |Nucleoplasmin-like/VP (viral coat and capsid proteins) |ssDNA viruses |Microviridae-like VP |Microvirus capsid proteins |Bacteriophage phi-X174 [TaxId: 10847]
d2jpba_ : (VAL137) (SER163) [view usage] : a.4.6.1 |DNA/RNA-binding 3-helical bundle |C-terminal effector domain of the bipartite response regulators |PhoB-like |OmpR |Escherichia coli [TaxId: 562]
d2fyoa1 : (SER588) (TYR628) [view usage] : c.43.1.0 |CoA-dependent acyltransferases |CoA-dependent acyltransferases |automated matches |automated matches |Norway rat (Rattus norvegicus) [TaxId: 10116]
d1s3ra_ : (ARG480) (LYS525) [view usage] : f.9.1.0 |Perfringolysin |Perfringolysin |automated matches |automated matches |Streptococcus intermedius [TaxId: 1338]
d3nx1b_ : (GLY14) (ASP53) [view usage] : b.60.1.0 |Lipocalins |Lipocalins |automated matches |automated matches |Enterobacter sp. [TaxId: 418698]
d1k4za_ : (GLY1438) (SER1471) [view usage] : b.80.5.1 |Single-stranded right-handed beta-helix |C-terminal domain of adenylylcyclase associated protein |C-terminal domain of adenylylcyclase associated protein |C-terminal domain of adenylylcyclase associated protein |Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
d2poaa_ : (THR37) (LYS73) [view usage] : b.60.1.0 |Lipocalins |Lipocalins |automated matches |automated matches |Blood fluke (Schistosoma mansoni) [TaxId: 6183]
d2h4ta1 : (ILE586) (TYR628) [view usage] : c.43.1.0 |CoA-dependent acyltransferases |CoA-dependent acyltransferases |automated matches |automated matches |Norway rat (Rattus norvegicus) [TaxId: 10116]
d3cvba_ : (LEU59) (VAL103) [view usage] : b.6.1.1 |Cupredoxin-like |Cupredoxins |Plastocyanin/azurin-like |Plastocyanin |Phormidium laminosum [TaxId: 32059]
d2giab1 : (PRO105) (ASP147) [view usage] : d.18.1.4 |ssDNA-binding transcriptional regulator domain |ssDNA-binding transcriptional regulator domain |Guide RNA binding protein gBP |GBP21 |Trypanosome (Trypanosoma brucei) [TaxId: 5691]
d3db7a_ : (ALA51) (CYS85) [view usage] : d.98.2.1 |BLIP-like |BT0923-like |BT0923-like |automated matches |Bacteroides thetaiotaomicron [TaxId: 818]
d1mvga_ : (LYS88) (ARG124) [view usage] : b.60.1.2 |Lipocalins |Lipocalins |Fatty acid binding protein-like |Liver basic fatty acid binding protein, LB_FABP |Chicken (Gallus gallus) [TaxId: 9031]
d3zs3a_ : (THR89) (CYS132) [view usage] : b.25.1.0 |Osmotin, thaumatin-like protein |Osmotin, thaumatin-like protein |automated matches |automated matches |Malus x [TaxId: 3750]
d1bqhg_ : (LEU74) (LEU119) [view usage] : b.1.1.1 |Immunoglobulin-like beta-sandwich |Immunoglobulin |V set domains (antibody variable domain-like) |CD8 |Mouse (Mus musculus) [TaxId: 10090]
d1ezga_ : (ALA7) (ASN30) [view usage] : b.80.2.1 |Single-stranded right-handed beta-helix |Insect cysteine-rich antifreeze protein |Insect cysteine-rich antifreeze protein |Insect cysteine-rich antifreeze protein |Yellow mealworm (Tenebrio molitor) [TaxId: 7067]
d1zyba2 : (ILE42) (ALA79) [view usage] : b.82.3.2 |Double-stranded beta-helix |cAMP-binding domain-like |cAMP-binding domain |Probable transcription regulator BT4300, N-terminal domain |Bacteroides thetaiotaomicron [TaxId: 818]
d1a7ba_ : (ALA54) (ILE97) [view usage] : b.1.1.1 |Immunoglobulin-like beta-sandwich |Immunoglobulin |V set domains (antibody variable domain-like) |CD2, first domain |Norway rat (Rattus norvegicus) [TaxId: 10116]
d1ic1a1 : (GLU87) (PRO134) [view usage] : b.1.1.3 |Immunoglobulin-like beta-sandwich |Immunoglobulin |C2 set domains |Intercellular cell adhesion molecule-1 (ICAM-1) |Human (Homo sapiens) [TaxId: 9606]
d1gff1_ : (VAL10) (PRO72) [view usage] : b.121.5.1 |Nucleoplasmin-like/VP (viral coat and capsid proteins) |ssDNA viruses |Microviridae-like VP |Microvirus capsid proteins |Bacteriophage G4 [TaxId: 10843]
d2b5la1 : (VAL259) (LEU304) [view usage] : b.69.4.3 |7-bladed beta-propeller |WD40 repeat-like |DDB1-like |DDB1 |Human (Homo sapiens) [TaxId: 9606]
d2vhpp1 : (ILE4) (ASP55) [view usage] : d.27.1.1 |Ribosomal protein S16 |Ribosomal protein S16 |Ribosomal protein S16 |Ribosomal protein S16 |Escherichia coli [TaxId: 562]
d4d8sa_ : (GLY351) (VAL398) [view usage] : b.68.1.0 |6-bladed beta-propeller |Sialidases |automated matches |automated matches |Influenza A virus [TaxId: 11320]
d1pzda1 : (ASP671) (ALA711) [view usage] : b.1.10.3 |Immunoglobulin-like beta-sandwich |Clathrin adaptor appendage domain |Coatomer appendage domain |Coatomer gamma subunit C-terminal domain, first subdomain |Cow (Bos taurus) [TaxId: 9913]
d4geza_ : (GLN337) (GLU380) [view usage] : b.68.1.0 |6-bladed beta-propeller |Sialidases |automated matches |automated matches |Influenza A virus [TaxId: 11320]
d1t8va1 : (ASN87) (ILE127) [view usage] : b.60.1.2 |Lipocalins |Lipocalins |Fatty acid binding protein-like |Intestinal fatty acid binding protein |Norway rat (Rattus norvegicus) [TaxId: 10116]
d3nssa_ : (GLY351) (ASP396) [view usage] : b.68.1.0 |6-bladed beta-propeller |Sialidases |automated matches |automated matches |Influenza A virus [TaxId: 641501]
List of distinct SCOP folds where this concept is used (in one or more of its domains):
b.68, b.80, b.70, b.82, b.81, b.69, b.76, c.66, f.4, d.104, c.55, b.60, b.121, d.3, b.6, d.160, b.1, d.108, c.43, d.98,
b.25, a.4, b.7, g.18, b.24, d.18, d.156, e.65, f.9, d.27