Tableau information
Concept source: d1fnqh1 amino acid (a.a.) range (VAL165)(ALA207)
nSSEs in this Concept: 4
String of secondary struct.elems. (SSEs) defining this concept: EEEE
Each SSE's a.a.range: (start resi) (end resi) SSEtype (H=Helix; E=Strand) followed by a numeric SSE ID:
(VAL165) (ASP170) E1
(ARG177) (GLU182) E2
(SER187) (PRO192) E3
(ARG202) (ALA207) E4
Orientation angles° of SSE-pairs; those in contact shown in bold font
E1
E2 155.2° E2
E3 -43.0° 158.7° E3
E4 61.6° -104.8° 74.4°
Footnote: Inferred from this concept's usages (listed below) was the angular variance of 1σ = ±8.9° about each orientation angle shown above.
Loci of concept usages (shown as a range of a.a. residue ids) in SCOP(v2.05) domains, along with their brief legend taken from SCOP
d2f1la1 : (HIS124) (ASP170) [view usage] : b.41.1.4 |PRC-barrel domain |PRC-barrel domain |RimM C-terminal domain-like |16S rRNA processing protein RimM, C-terminal domain |Pseudomonas aeruginosa [TaxId: 287]
d2z35a_ : (LYS53) (GLU82) [view usage] : b.1.1.1 |Immunoglobulin-like beta-sandwich |Immunoglobulin |V set domains (antibody variable domain-like) |automated matches |Mouse (Mus musculus) [TaxId: 10090]
d1n9wb1 : (HIS23) (GLY63) [view usage] : b.40.4.1 |OB-fold |Nucleic acid-binding proteins |Anticodon-binding domain |Aspartyl-tRNA synthetase (AspRS) |Thermus thermophilus, AspRS-2 [TaxId: 274]
d4ohja1 : (LEU66) (ASN105) [view usage] : b.40.2.2 |OB-fold |Bacterial enterotoxins |Superantigen toxins, N-terminal domain |automated matches |Staphylococcus aureus [TaxId: 1280]
d1yz1b_ : (GLN133) (LYS171) [view usage] : b.88.1.2 |Mss4-like |Mss4-like |Translationally controlled tumor protein TCTP (histamine-releasing factor) |automated matches |Human (Homo sapiens) [TaxId: 9606]
d1fnqh1 : (VAL165) (ALA207) [view usage] : b.41.1.1 |PRC-barrel domain |PRC-barrel domain |Photosynthetic reaction centre, H-chain, cytoplasmic domain |Photosynthetic reaction centre |Rhodobacter sphaeroides [TaxId: 1063]
d1fltv_ : (SER50) (CYS104) [view usage] : g.17.1.1 |Cystine-knot cytokines |Cystine-knot cytokines |Platelet-derived growth factor-like |Vascular endothelial growth factor, VEGF |Human (Homo sapiens) [TaxId: 9606]
d1aw7a1 : (LEU26) (ASN65) [view usage] : b.40.2.2 |OB-fold |Bacterial enterotoxins |Superantigen toxins, N-terminal domain |Toxic shock syndrome toxin-1 (TSST-1) |Staphylococcus aureus [TaxId: 1280]
d2ij0a1 : (LEU26) (ASN65) [view usage] : b.40.2.2 |OB-fold |Bacterial enterotoxins |Superantigen toxins, N-terminal domain |Toxic shock syndrome toxin-1 (TSST-1) |Staphylococcus aureus [TaxId: 1280]
d1k8ga2 : (LEU231) (SER275) [view usage] : b.40.4.3 |OB-fold |Nucleic acid-binding proteins |Single strand DNA-binding domain, SSB |Telomere end binding protein alpha subunit |Oxytricha nova [TaxId: 200597]
d1kixa2 : (LEU231) (SER275) [view usage] : b.40.4.3 |OB-fold |Nucleic acid-binding proteins |Single strand DNA-binding domain, SSB |Telomere end binding protein alpha subunit |Oxytricha nova [TaxId: 200597]
d1gz7a_ : (ALA1) (MET66) [view usage] : c.69.1.17 |alpha/beta-Hydrolases |alpha/beta-Hydrolases |Fungal lipases |Type-B carboxylesterase/lipase |Candida rugosa, lipase 2 isoform [TaxId: 5481]
d1b70b3 : (GLU52) (GLY93) [view usage] : b.40.4.4 |OB-fold |Nucleic acid-binding proteins |Myf domain |Domain B2 of PheRS-beta, PheT |Thermus thermophilus [TaxId: 274]
d2ot2a1 : (ARG10) (HIS51) [view usage] : b.40.14.1 |OB-fold |HupF/HypC-like |HupF/HypC-like |Hydrogenase expression/formation protein HypC |Escherichia coli [TaxId: 562]
d3oudb_ : (ARG8) (PRO39) [view usage] : b.50.1.1 |Acid proteases |Acid proteases |Retroviral protease (retropepsin) |Human immunodeficiency virus type 1 protease |Human immunodeficiency virus type 1 [TaxId: 11676]
d1oqoa2 : (GLN342) (ASN390) [view usage] : b.1.1.2 |Immunoglobulin-like beta-sandwich |Immunoglobulin |C1 set domains (antibody constant domain-like) |Immunoglobulin heavy chain gamma constant domain 3, CH3-gamma |Human (Homo sapiens) [TaxId: 9606]
d3p9wc_ : (SER50) (CYS104) [view usage] : g.17.1.1 |Cystine-knot cytokines |Cystine-knot cytokines |Platelet-derived growth factor-like |automated matches |Human (Homo sapiens) [TaxId: 9606]
d1eysh1 : (SER168) (ALA213) [view usage] : b.41.1.1 |PRC-barrel domain |PRC-barrel domain |Photosynthetic reaction centre, H-chain, cytoplasmic domain |Photosynthetic reaction centre |Thermochromatium tepidum [TaxId: 1050]
d3p53a3 : (GLY312) (ASN382) [view usage] : b.42.5.0 |beta-Trefoil |Actin-crosslinking proteins |automated matches |automated matches |Human (Homo sapiens) [TaxId: 9606]
d1dxrh1 : (THR169) (SER212) [view usage] : b.41.1.1 |PRC-barrel domain |PRC-barrel domain |Photosynthetic reaction centre, H-chain, cytoplasmic domain |Photosynthetic reaction centre |Rhodopseudomonas viridis [TaxId: 1079]
d3t6dh2 : (THR169) (SER212) [view usage] : b.41.1.1 |PRC-barrel domain |PRC-barrel domain |Photosynthetic reaction centre, H-chain, cytoplasmic domain |automated matches |Blastochloris viridis [TaxId: 1079]
d1k8gb2 : (LEU231) (SER275) [view usage] : b.40.4.3 |OB-fold |Nucleic acid-binding proteins |Single strand DNA-binding domain, SSB |Telomere end binding protein alpha subunit |Oxytricha nova [TaxId: 200597]
d2z1cb_ : (ILE10) (THR46) [view usage] : b.40.14.1 |OB-fold |HupF/HypC-like |HupF/HypC-like |Hydrogenase expression/formation protein HypC |Thermococcus kodakaraensis [TaxId: 311400]
d1rvjh1 : (VAL165) (ALA207) [view usage] : b.41.1.1 |PRC-barrel domain |PRC-barrel domain |Photosynthetic reaction centre, H-chain, cytoplasmic domain |Photosynthetic reaction centre |Rhodobacter sphaeroides [TaxId: 1063]
d3i9v33 : (GLU250) (CYS291) [view usage] : c.81.1.1 |Formate dehydrogenase/DMSO reductase, domains 1-3 |Formate dehydrogenase/DMSO reductase, domains 1-3 |Formate dehydrogenase/DMSO reductase, domains 1-3 |automated matches |Thermus thermophilus HB8 [TaxId: 300852]
d2j6ja_ : (ILE186) (PRO232) [view usage] : e.76.1.2 |Viral glycoprotein ectodomain-like |Viral glycoprotein ectodomain-like |Spike glycoprotein-like |automated matches |Vesicular stomatitis indiana virus [TaxId: 11277]
d1onia_ : (SER2) (GLY38) [view usage] : d.79.1.1 |Bacillus chorismate mutase-like |YjgF-like |YjgF/L-PSP |14.5 kda translational inhibitor protein, L-PSP |Human (Homo sapiens) [TaxId: 9606]
d3wmmh2 : (SER168) (ALA213) [view usage] : b.41.1.1 |PRC-barrel domain |PRC-barrel domain |Photosynthetic reaction centre, H-chain, cytoplasmic domain |automated matches |Thermochromatium tepidum [TaxId: 1050]
d3e3qc_ : (PRO54) (ARG82) [view usage] : b.1.1.1 |Immunoglobulin-like beta-sandwich |Immunoglobulin |V set domains (antibody variable domain-like) |automated matches |Mouse (Mus musculus) [TaxId: 10090]
d1jb7a2 : (LEU231) (SER275) [view usage] : b.40.4.3 |OB-fold |Nucleic acid-binding proteins |Single strand DNA-binding domain, SSB |Telomere end binding protein alpha subunit |Oxytricha nova [TaxId: 200597]
d2qgga2 : (GLU131) (ASN177) [view usage] : b.41.1.0 |PRC-barrel domain |PRC-barrel domain |automated matches |automated matches |Acinetobacter calcoaceticus [TaxId: 471]
d2gidb1 : (ARG106) (VAL134) [view usage] : d.18.1.4 |ssDNA-binding transcriptional regulator domain |ssDNA-binding transcriptional regulator domain |Guide RNA binding protein gBP |GBP21 |Trypanosome (Trypanosoma brucei) [TaxId: 5691]
List of distinct SCOP folds where this concept is used (in one or more of its domains):
c.69, c.81, b.50, b.40, b.1, b.42, d.79, b.41, b.88, g.17, e.76, d.18