Tableau information
Concept source: d1o0wb2 amino acid (a.a.) range (PRO184)(GLY217)
nSSEs in this Concept: 4
String of secondary struct.elems. (SSEs) defining this concept: EEEE
Each SSE's a.a.range: (start resi) (end resi) SSEtype (H=Helix; E=Strand) followed by a numeric SSE ID:
(PRO184) (LEU189) E1
(VAL190) (ASP196) E2
(ASP198) (VAL207) E3
(ALA213) (GLY217) E4
Orientation angles° of SSE-pairs; those in contact shown in bold font
E1
E2 -42.0° E2
E3 154.0° 153.0° E3
E4 -46.5° -42.1° 156.2°
Footnote: Inferred from this concept's usages (listed below) was the angular variance of 1σ = ±12.7° about each orientation angle shown above.
Loci of concept usages (shown as a range of a.a. residue ids) in SCOP(v2.05) domains, along with their brief legend taken from SCOP
d2egea_ : (GLY1) (GLY56) [view usage] : b.34.2.0 |SH3-like barrel |SH3-domain |automated matches |automated matches |Human (Homo sapiens) [TaxId: 9606]
d2reaa_ : (LYS1425) (PHE1460) [view usage] : d.189.1.0 |PX domain |PX domain |automated matches |automated matches |Human (Homo sapiens) [TaxId: 9606]
d1hnfa2 : (GLU131) (LYS182) [view usage] : b.1.1.3 |Immunoglobulin-like beta-sandwich |Immunoglobulin |C2 set domains |CD2, second domain |Human (Homo sapiens) [TaxId: 9606]
d1ya5b2 : (PRO103) (TYR138) [view usage] : b.1.1.0 |Immunoglobulin-like beta-sandwich |Immunoglobulin |automated matches |automated matches |Human (Homo sapiens) [TaxId: 9606]
d1u1zb_ : (GLN108) (ALA142) [view usage] : d.38.1.6 |Thioesterase/thiol ester dehydrase-isomerase |Thioesterase/thiol ester dehydrase-isomerase |FabZ-like |(3R)-hydroxymyristoyl ACP dehydrase FabZ |Pseudomonas aeruginosa [TaxId: 287]
d1utea_ : (LEU270) (PRO301) [view usage] : d.159.1.1 |Metallo-dependent phosphatases |Metallo-dependent phosphatases |Purple acid phosphatase-like |Mammalian purple acid phosphatase |Pig (Sus scrofa) [TaxId: 9823]
d3ivma1 : (ALA279) (ASP308) [view usage] : b.69.7.0 |7-bladed beta-propeller |Peptidase/esterase 'gauge' domain |automated matches |automated matches |Aeromonas punctata [TaxId: 648]
d4dh2c_ : (ASP14) (ASP56) [view usage] : b.2.2.0 |Common fold of diphtheria toxin/transcription factors/cytochrome f |Carbohydrate-binding domain |automated matches |automated matches |Clostridium thermocellum [TaxId: 203119]
d1uxea_ : (THR183) (ALA227) [view usage] : b.21.1.1 |Virus attachment protein globular domain |Virus attachment protein globular domain |Adenovirus fiber protein "knob" domain |Adenovirus fiber protein "knob" domain |Human adenovirus 37 [TaxId: 52275]
d3o61d_ : (GLN3) (ARG44) [view usage] : d.113.1.1 |Nudix |Nudix |MutT-like |ADP-ribose pyrophosphatase homologue YffH |Escherichia coli [TaxId: 562]
d2i4ka_ : (ASP3) (ARG44) [view usage] : d.189.1.0 |PX domain |PX domain |automated matches |automated matches |Human (Homo sapiens) [TaxId: 9606]
d1plsa_ : (ILE6) (LYS37) [view usage] : b.55.1.1 |PH domain-like barrel |PH domain-like |Pleckstrin-homology domain (PH domain) |Pleckstrin |Human (Homo sapiens) [TaxId: 9606]
d1ug9a2 : (GLY737) (TYR773) [view usage] : b.1.18.2 |Immunoglobulin-like beta-sandwich |E set domains |E-set domains of sugar-utilizing enzymes |Glucodextranase, domain B |Arthrobacter globiformis [TaxId: 1665]
d1g1ca_ : (ALA5) (LYS41) [view usage] : b.1.1.4 |Immunoglobulin-like beta-sandwich |Immunoglobulin |I set domains |Titin |Human (Homo sapiens), different modules [TaxId: 9606]
d2qw7h_ : (LEU3) (GLY44) [view usage] : b.40.15.1 |OB-fold |EutN/CcmL-like |EutN/CcmL-like |Carbon dioxide concentrating mechanism protein CcmL |Synechocystis sp. PCC 6803 [TaxId: 1148]
d2hbwa1 : (ARG42) (LEU70) [view usage] : b.34.11.0 |SH3-like barrel |Prokaryotic SH3-related domain |automated matches |automated matches |Anabaena variabilis [TaxId: 240292]
d1snzb_ : (MET1) (SER35) [view usage] : b.30.5.4 |Supersandwich |Galactose mutarotase-like |Aldose 1-epimerase (mutarotase) |Galactose mutarotase |Human (Homo sapiens) [TaxId: 9606]
d1omoa_ : (ALA36) (GLY72) [view usage] : c.2.1.13 |NAD(P)-binding Rossmann-fold domains |NAD(P)-binding Rossmann-fold domains |Ornithine cyclodeaminase-like |Archaeal alanine dehydrogenase |Archaeoglobus fulgidus [TaxId: 2234]
d4i0ub1 : (ASN104) (GLN140) [view usage] : d.328.1.1 |CorA soluble domain-like |CorA soluble domain-like |CorA soluble domain-like |automated matches |Thermotoga maritima [TaxId: 243274]
d2ar5a_ : (LYS6) (PHE41) [view usage] : d.189.1.0 |PX domain |PX domain |automated matches |automated matches |Human (Homo sapiens) [TaxId: 9606]
d1nyec_ : (HIS420) (PHE456) [view usage] : d.227.1.1 |OsmC-like |OsmC-like |Ohr/OsmC resistance proteins |Osmotically inducible protein OsmC |Escherichia coli [TaxId: 562]
d1snza_ : (SER3) (SER35) [view usage] : b.30.5.4 |Supersandwich |Galactose mutarotase-like |Aldose 1-epimerase (mutarotase) |Galactose mutarotase |Human (Homo sapiens) [TaxId: 9606]
d4nhfc_ : (LYS153) (GLY203) [view usage] : d.17.4.0 |Cystatin-like |NTF2-like |automated matches |automated matches |Bartonella grahamii [TaxId: 634504]
d4az9a_ : (GLN-1) (GLU36) [view usage] : d.189.1.0 |PX domain |PX domain |automated matches |automated matches |Human (Homo sapiens) [TaxId: 9606]
d2d7na1 : (GLY33) (TYR66) [view usage] : b.1.18.10 |Immunoglobulin-like beta-sandwich |E set domains |Filamin repeat (rod domain) |Filamin C |Human (Homo sapiens) [TaxId: 9606]
d1igoa_ : (ALA2) (ASN42) [view usage] : b.29.1.11 |Concanavalin A-like lectins/glucanases |Concanavalin A-like lectins/glucanases |Xylanase/endoglucanase 11/12 |Xylanase II |Bacillus subtilis, B230 [TaxId: 1423]
d2h3ka1 : (GLY22) (ASP64) [view usage] : b.1.28.1 |Immunoglobulin-like beta-sandwich |NEAT domain-like |NEAT domain |Iron-regulated surface determinant protein H, IsdH |Staphylococcus aureus [TaxId: 1280]
d1mo9a2 : (GLY275) (GLU304) [view usage] : c.3.1.5 |FAD/NAD(P)-binding domain |FAD/NAD(P)-binding domain |FAD/NAD-linked reductases, N-terminal and central domains |NADH-dependent 2-ketopropyl coenzyme M oxidoreductase/carboxylase |Xanthobacter sp., py2 [TaxId: 35809]
d3muna1 : (ALA279) (ASP308) [view usage] : b.69.7.0 |7-bladed beta-propeller |Peptidase/esterase 'gauge' domain |automated matches |automated matches |Aeromonas punctata [TaxId: 648]
d1nb0a_ : (GLY52) (HIS91) [view usage] : b.43.5.1 |Reductase/isomerase/elongation factor common domain |Riboflavin kinase-like |ATP-dependent riboflavin kinase-like |Riboflavin kinase |Human (Homo sapiens) [TaxId: 9606]
d1jmca2 : (LYS324) (GLY362) [view usage] : b.40.4.3 |OB-fold |Nucleic acid-binding proteins |Single strand DNA-binding domain, SSB |Replication protein A 70 KDa subunit (RPA70) |Human (Homo sapiens) [TaxId: 9606]
d3iuna1 : (ALA279) (ASP308) [view usage] : b.69.7.0 |7-bladed beta-propeller |Peptidase/esterase 'gauge' domain |automated matches |automated matches |Aeromonas punctata [TaxId: 648]
d2hgjd2 : (ILE75) (TYR104) [view usage] : b.40.4.5 |OB-fold |Nucleic acid-binding proteins |Cold shock DNA-binding domain-like |N-terminal domain of ribosomal protein L2 |Thermus thermophilus [TaxId: 274]
d1tueg_ : (THR149) (ILE174) [view usage] : b.91.1.1 |E2 regulatory, transactivation domain |E2 regulatory, transactivation domain |E2 regulatory, transactivation domain |E2 regulatory, transactivation domain |Human papillomavirus type 18 [TaxId: 333761]
d2bq8x_ : (LEU268) (PRO299) [view usage] : d.159.1.1 |Metallo-dependent phosphatases |Metallo-dependent phosphatases |Purple acid phosphatase-like |automated matches |Human (Homo sapiens) [TaxId: 9606]
d1fnla1 : (ASN38) (VAL86) [view usage] : b.1.1.4 |Immunoglobulin-like beta-sandwich |Immunoglobulin |I set domains |Fc gamma receptor ectodomain (CD32) |Human (Homo sapiens), III [TaxId: 9606]
d1mi1a2 : (VAL2143) (VAL2172) [view usage] : b.55.1.6 |PH domain-like barrel |PH domain-like |PreBEACH PH-like domain |PH-like domain of neurobeachin |Human (Homo sapiens) [TaxId: 9606]
d4do4b2 : (GLY311) (ARG344) [view usage] : b.71.1.0 |Glycosyl hydrolase domain |Glycosyl hydrolase domain |automated matches |automated matches |Human (Homo sapiens) [TaxId: 9606]
d1yopa1 : (TYR5) (TYR35) [view usage] : g.41.17.1 |Rubredoxin-like |CSL zinc finger |CSL zinc finger |Diphthamide biosynthesis protein 3, DPH3 |Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
d2hs1a_ : (GLY40) (GLY78) [view usage] : b.50.1.1 |Acid proteases |Acid proteases |Retroviral protease (retropepsin) |Human immunodeficiency virus type 1 protease |Human immunodeficiency virus type 1 [TaxId: 11676]
d2vuja_ : (ASP105) (SER143) [view usage] : b.29.1.11 |Concanavalin A-like lectins/glucanases |Concanavalin A-like lectins/glucanases |Xylanase/endoglucanase 11/12 |automated matches |Escherichia coli [TaxId: 562]
d1h3ea2 : (GLY395) (LEU430) [view usage] : d.66.1.4 |Alpha-L RNA-binding motif |Alpha-L RNA-binding motif |Tyrosyl-tRNA synthetase (TyrRS), C-terminal domain |Tyrosyl-tRNA synthetase (TyrRS), C-terminal domain |Thermus thermophilus [TaxId: 274]
d2gtlo1 : (GLU123) (PHE171) [view usage] : b.61.7.1 |Streptavidin-like |Extracellular hemoglobin linker subunit, receptor domain |Extracellular hemoglobin linker subunit, receptor domain |Extracellular hemoglobin linker l3 subunit |Common earthworm (Lumbricus terrestris) [TaxId: 6398]
d4nhff_ : (LYS153) (GLY203) [view usage] : d.17.4.0 |Cystatin-like |NTF2-like |automated matches |automated matches |Bartonella grahamii [TaxId: 634504]
d1e4ka2 : (GLN342) (TRP381) [view usage] : b.1.1.2 |Immunoglobulin-like beta-sandwich |Immunoglobulin |C1 set domains (antibody constant domain-like) |Immunoglobulin heavy chain gamma constant domain 3, CH3-gamma |Human (Homo sapiens) [TaxId: 9606]
List of distinct SCOP folds where this concept is used (in one or more of its domains):
c.2, d.159, b.69, b.29, b.30, b.50, b.40, b.2, b.1, d.17, d.38, d.328, b.21, b.55, b.34, b.91, c.3, b.61, b.43, d.227,
d.113, b.71, d.50, g.41, d.66, d.189