Tableau information
Concept source: d1r27a2 amino acid (a.a.) range (GLU425)(THR472)
nSSEs in this Concept: 4
String of secondary struct.elems. (SSEs) defining this concept: EEEE
Each SSE's a.a.range: (start resi) (end resi) SSEtype (H=Helix; E=Strand) followed by a numeric SSE ID:
(GLU425) (PHE434) E1
(ASN449) (LYS454) E2
(PRO456) (GLN461) E3
(ALA468) (THR472) E4
Orientation angles° of SSE-pairs; those in contact shown in bold font
E1
E2 158.0° E2
E3 112.9° -79.5° E3
E4 -65.6° 93.1° 140.9°
Footnote: Inferred from this concept's usages (listed below) was the angular variance of 1σ = ±13.0° about each orientation angle shown above.
Loci of concept usages (shown as a range of a.a. residue ids) in SCOP(v2.05) domains, along with their brief legend taken from SCOP
d2cr2a1 : (SER76) (GLY112) [view usage] : b.8.1.1 |TRAF domain-like |TRAF domain-like |MATH domain |Speckle-type poz protein SPOP |Human (Homo sapiens) [TaxId: 9606]
d1te0a2 : (ASN60) (ASN94) [view usage] : b.47.1.1 |Trypsin-like serine proteases |Trypsin-like serine proteases |Prokaryotic proteases |Stress sensor protease DegS, catalytic domain |Escherichia coli [TaxId: 562]
d1vcla2 : (GLY205) (ASN248) [view usage] : b.42.2.1 |beta-Trefoil |Ricin B-like lectins |Ricin B-like |Hemolytic lectin CEL-III, domains 1 and 2 |Cucumaria echinata [TaxId: 40245]
d3r7ka1 : (THR160) (ALA190) [view usage] : e.6.1.0 |Acyl-CoA dehydrogenase NM domain-like |Acyl-CoA dehydrogenase NM domain-like |automated matches |automated matches |Mycobacterium abscessus [TaxId: 561007]
d1z5fa_ : (ASP61) (GLY100) [view usage] : d.5.1.1 |RNase A-like |RNase A-like |Ribonuclease A-like |automated matches |Bullfrog (Rana catesbeiana) [TaxId: 8400]
d2e4ma1 : (VAL26) (VAL63) [view usage] : b.42.2.1 |beta-Trefoil |Ricin B-like lectins |Ricin B-like |automated matches |Clostridium botulinum [TaxId: 1491]
d3n7ka2 : (CYS1245) (PRO1288) [view usage] : b.42.4.0 |beta-Trefoil |STI-like |automated matches |automated matches |Clostridium botulinum [TaxId: 1491]
d1qxma1 : (VAL26) (VAL63) [view usage] : b.42.2.1 |beta-Trefoil |Ricin B-like lectins |Ricin B-like |Hemagglutinin component Ha1 |Clostridium botulinum D phage [TaxId: 29342]
d2vina_ : (ALA32) (ALA55) [view usage] : b.47.1.2 |Trypsin-like serine proteases |Trypsin-like serine proteases |Eukaryotic proteases |automated matches |Human (Homo sapiens) [TaxId: 9606]
d1lvba_ : (GLY53) (ARG86) [view usage] : b.47.1.3 |Trypsin-like serine proteases |Trypsin-like serine proteases |Viral proteases |TEV protease (nucleat inclusion protein A, NIA) |Tobacco etch virus, TEV [TaxId: 12227]
d1v9za_ : (ARG97) (VAL130) [view usage] : d.110.3.2 |Profilin-like |PYP-like sensor domain (PAS domain) |Heme-binding PAS domain |Direct oxygen sensor protein, DOS |Escherichia coli [TaxId: 562]
d1usca_ : (VAL20) (SER53) [view usage] : b.45.1.2 |Split barrel-like |FMN-binding split barrel |NADH:FMN oxidoreductase-like |Putative styrene monooxygenase small component |Thermus thermophilus [TaxId: 274]
d1vb6a_ : (ARG97) (VAL130) [view usage] : d.110.3.2 |Profilin-like |PYP-like sensor domain (PAS domain) |Heme-binding PAS domain |Direct oxygen sensor protein, DOS |Escherichia coli [TaxId: 562]
d1soza2 : (VAL61) (ASN94) [view usage] : b.47.1.1 |Trypsin-like serine proteases |Trypsin-like serine proteases |Prokaryotic proteases |Stress sensor protease DegS, catalytic domain |Escherichia coli [TaxId: 562]
d1r27a2 : (GLU425) (THR472) [view usage] : c.81.1.1 |Formate dehydrogenase/DMSO reductase, domains 1-3 |Formate dehydrogenase/DMSO reductase, domains 1-3 |Formate dehydrogenase/DMSO reductase, domains 1-3 |Respiratory nitrate reductase 1 alpha chain |Escherichia coli [TaxId: 562]
d1i10a2 : (THR274) (THR306) [view usage] : d.162.1.1 |LDH C-terminal domain-like |LDH C-terminal domain-like |Lactate & malate dehydrogenases, C-terminal domain |Lactate dehydrogenase |Human (Homo sapiens), muscle isoform (M chain) [TaxId: 9606]
d3lgib_ : (ASN60) (ASN94) [view usage] : b.47.1.1 |Trypsin-like serine proteases |Trypsin-like serine proteases |Prokaryotic proteases |automated matches |Escherichia coli K-12 [TaxId: 83333]
d1iwoa1 : (LYS128) (ALA161) [view usage] : b.82.7.1 |Double-stranded beta-helix |Calcium ATPase, transduction domain A |Calcium ATPase, transduction domain A |Calcium ATPase, transduction domain A |Rabbit (Oryctolagus cuniculus) [TaxId: 9986]
d3mmga_ : (GLU54) (LYS86) [view usage] : b.47.1.0 |Trypsin-like serine proteases |Trypsin-like serine proteases |automated matches |automated matches |Tobacco vein mottling virus [TaxId: 12228]
d1vkda_ : (TRP226) (TYR263) [view usage] : b.67.2.4 |5-bladed beta-propeller |Arabinanase/levansucrase/invertase |TM1225-like predicted glycosylases |Hypothetical protein TM1225 |Thermotoga maritima [TaxId: 2336]
d3c2ua1 : (GLN258) (VAL307) [view usage] : b.67.2.0 |5-bladed beta-propeller |Arabinanase/levansucrase/invertase |automated matches |automated matches |Selenomonas ruminantium [TaxId: 971]
d3zbwa_ : (GLN76) (SER117) [view usage] : d.5.1.1 |RNase A-like |RNase A-like |Ribonuclease A-like |automated matches |Mouse (Mus musculus) [TaxId: 10090]
d3tewa1 : (GLY641) (ASP677) [view usage] : f.60.1.1 |Anthrax protective antigen C-terminal-like |Anthrax protective antigen C-terminal-like |Anthrax protective antigen C-terminal-like |Anthrax protective antigen C-terminal-like |Anthrax bacillus (Bacillus anthracis) [TaxId: 1392]
d1j7xa_ : (HIS244) (GLY274) [view usage] : c.14.1.2 |ClpP/crotonase |ClpP/crotonase |Tail specific protease, catalytic domain |Interphotoreceptor retinoid-binding protein IRBP |African clawed frog (Xenopus laevis) [TaxId: 8355]
d2p97a1 : (GLU122) (LEU149) [view usage] : d.157.1.12 |Metallo-hydrolase/oxidoreductase |Metallo-hydrolase/oxidoreductase |Ava3068-like |Hypothetical protein Ava3068 |Anabaena variabilis [TaxId: 1172]
d1jsya1 : (SER126) (PRO175) [view usage] : b.1.18.11 |Immunoglobulin-like beta-sandwich |E set domains |Arrestin/Vps26-like |Arrestin |Cow (Bos taurus), beta-arrestin 1 [TaxId: 9913]
d3zc8a_ : (VAL90) (HIS139) [view usage] : b.42.4.0 |beta-Trefoil |STI-like |automated matches |automated matches |Murraya koenigii [TaxId: 311449]
d3r4sa2 : (CYS1245) (PRO1288) [view usage] : b.42.4.0 |beta-Trefoil |STI-like |automated matches |automated matches |Clostridium botulinum [TaxId: 1491]
d3r3qa_ : (ARG50) (PRO88) [view usage] : d.20.1.2 |UBC-like |UBC-like |UEV domain |automated matches |Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
d1alya_ : (PHE189) (GLY226) [view usage] : b.22.1.1 |TNF-like |TNF-like |TNF-like |Extracellular domain of CD40 ligand |Human (Homo sapiens) [TaxId: 9606]
d3gvka1 : (SER664) (VAL702) [view usage] : b.68.1.2 |6-bladed beta-propeller |Sialidases |Endo-alpha-sialidase |automated matches |Enterobacteria phage [TaxId: 344021]
d1fida_ : (TYR167) (THR192) [view usage] : d.171.1.1 |Fibrinogen C-terminal domain-like |Fibrinogen C-terminal domain-like |Fibrinogen C-terminal domain-like |Fibrinogen C-terminal domains |Human (Homo sapiens), gamma [TaxId: 9606]
d1vkdb_ : (TRP226) (TYR263) [view usage] : b.67.2.4 |5-bladed beta-propeller |Arabinanase/levansucrase/invertase |TM1225-like predicted glycosylases |Hypothetical protein TM1225 |Thermotoga maritima [TaxId: 2336]
d3pgzb_ : (TYR79) (MET113) [view usage] : b.40.4.0 |OB-fold |Nucleic acid-binding proteins |automated matches |automated matches |Bartonella henselae [TaxId: 38323]
d1xova1 : (TRP223) (ARG255) [view usage] : b.34.11.4 |SH3-like barrel |Prokaryotic SH3-related domain |Ply C-terminal domain-like |Endolysin Ply, C-terminal domain |Bacteriophage Psa [TaxId: 171618]
d1q16a2 : (ALA427) (THR472) [view usage] : c.81.1.1 |Formate dehydrogenase/DMSO reductase, domains 1-3 |Formate dehydrogenase/DMSO reductase, domains 1-3 |Formate dehydrogenase/DMSO reductase, domains 1-3 |Respiratory nitrate reductase 1 alpha chain |Escherichia coli [TaxId: 562]
d2fcpa_ : (TYR550) (TYR604) [view usage] : f.4.3.3 |Transmembrane beta-barrels |Porins |Ligand-gated protein channel |Ferric hydroxamate uptake receptor FhuA |Escherichia coli [TaxId: 562]
d3fd7a_ : (TYR64) (SER103) [view usage] : d.5.1.1 |RNase A-like |RNase A-like |Ribonuclease A-like |automated matches |Frog (Rana pipiens) [TaxId: 8404]
d1ws9a2 : (GLY166) (ASP222) [view usage] : e.6.1.1 |Acyl-CoA dehydrogenase NM domain-like |Acyl-CoA dehydrogenase NM domain-like |Medium chain acyl-CoA dehydrogenase, NM (N-terminal and middle) domains |Acyl-CoA dehydrogenase |Thermus thermophilus [TaxId: 274]
d1kigh_ : (TRP29) (ALA55) [view usage] : b.47.1.2 |Trypsin-like serine proteases |Trypsin-like serine proteases |Eukaryotic proteases |Coagulation factor Xa, protease domain |Cow (Bos taurus) [TaxId: 9913]
d1fi1a_ : (TYR552) (TYR606) [view usage] : f.4.3.3 |Transmembrane beta-barrels |Porins |Ligand-gated protein channel |Ferric hydroxamate uptake receptor FhuA |Escherichia coli [TaxId: 562]
d3p2da1 : (SER127) (PRO176) [view usage] : b.1.18.0 |Immunoglobulin-like beta-sandwich |E set domains |automated matches |automated matches |Cow (Bos taurus) [TaxId: 9913]
d2v65a2 : (THR273) (THR306) [view usage] : d.162.1.0 |LDH C-terminal domain-like |LDH C-terminal domain-like |automated matches |automated matches |Champsocephalus gunnari [TaxId: 52237]
d1g40a4 : (ASN194) (GLY223) [view usage] : g.18.1.1 |Complement control module/SCR domain |Complement control module/SCR domain |Complement control module/SCR domain |Complement control protein |Vaccinia virus [TaxId: 10245]
d2miba_ : (LEU69) (SER114) [view usage] : b.42.1.2 |beta-Trefoil |Cytokine |Interleukin-1 (IL-1) |Interleukin-1beta |Mouse (Mus musculus) [TaxId: 10090]
d3zbwb_ : (GLN76) (SER117) [view usage] : d.5.1.1 |RNase A-like |RNase A-like |Ribonuclease A-like |automated matches |Mouse (Mus musculus) [TaxId: 10090]
d3ir5a1 : (GLU425) (THR472) [view usage] : c.81.1.1 |Formate dehydrogenase/DMSO reductase, domains 1-3 |Formate dehydrogenase/DMSO reductase, domains 1-3 |Formate dehydrogenase/DMSO reductase, domains 1-3 |automated matches |Escherichia coli K-12 [TaxId: 83333]
d1qsva_ : (THR166) (ARG224) [view usage] : b.1.1.4 |Immunoglobulin-like beta-sandwich |Immunoglobulin |I set domains |Second domain of the Flt-1 receptor |Human (Homo sapiens) [TaxId: 9606]
d1d2ia_ : (ASP179) (TYR223) [view usage] : c.52.1.5 |Restriction endonuclease-like |Restriction endonuclease-like |Restriction endonuclease BglII |Restriction endonuclease BglII |Bacillus subtilis [TaxId: 1423]
d1g4ra1 : (SER126) (PRO175) [view usage] : b.1.18.11 |Immunoglobulin-like beta-sandwich |E set domains |Arrestin/Vps26-like |Arrestin |Cow (Bos taurus), beta-arrestin 1 [TaxId: 9913]
d1s68a_ : (VAL92) (TYR132) [view usage] : d.142.2.4 |ATP-grasp |DNA ligase/mRNA capping enzyme, catalytic domain |RNA ligase |RNA ligase 2, N-terminal domain |Bacteriophage T4 [TaxId: 10665]
d1vkde_ : (TRP226) (TYR263) [view usage] : b.67.2.4 |5-bladed beta-propeller |Arabinanase/levansucrase/invertase |TM1225-like predicted glycosylases |Hypothetical protein TM1225 |Thermotoga maritima [TaxId: 2336]
d3egwa1 : (GLU425) (THR472) [view usage] : c.81.1.1 |Formate dehydrogenase/DMSO reductase, domains 1-3 |Formate dehydrogenase/DMSO reductase, domains 1-3 |Formate dehydrogenase/DMSO reductase, domains 1-3 |automated matches |Escherichia coli K-12 [TaxId: 83333]
d1yu0a1 : (THR107) (ILE170) [view usage] : b.163.1.1 |Pseudo beta-prism I |Bacteriophage trimeric proteins domain |Mtd domain-like |Major tropism determinant (Mtd), N-terminal domain |Bordetella phage bpp-1 [TaxId: 194699]
d2fomb1 : (ALA22) (MET49) [view usage] : b.47.1.3 |Trypsin-like serine proteases |Trypsin-like serine proteases |Viral proteases |NS3 protease |Dengue virus type 2 [TaxId: 11060]
d1suja1 : (SER123) (ALA171) [view usage] : b.1.18.0 |Immunoglobulin-like beta-sandwich |E set domains |automated matches |automated matches |Ambystoma tigrinum [TaxId: 8305]
d1wgba_ : (TYR18) (GLY49) [view usage] : b.45.1.2 |Split barrel-like |FMN-binding split barrel |NADH:FMN oxidoreductase-like |Putative flavoprotein TTHA0420 |Thermus thermophilus [TaxId: 274]
d1yoaa1 : (TYR18) (GLY49) [view usage] : b.45.1.2 |Split barrel-like |FMN-binding split barrel |NADH:FMN oxidoreductase-like |Putative flavoprotein TTHA0420 |Thermus thermophilus [TaxId: 274]
d1q38a_ : (TYR15) (THR74) [view usage] : b.1.2.1 |Immunoglobulin-like beta-sandwich |Fibronectin type III |Fibronectin type III |Fibronectin, different Fn3 modules |Human (Homo sapiens) [TaxId: 9606]
List of distinct SCOP folds where this concept is used (in one or more of its domains):
b.68, b.82, c.81, b.67, b.47, d.157, c.14, f.4, b.40, e.6, d.171, b.1, b.45, d.20, d.110, b.42, d.142, c.52, b.22, b.34,
d.5, d.162, g.18, b.8, b.163, f.60