Tableau information
Concept source: d3araa_ amino acid (a.a.) range (VAL109)(GLU141)
nSSEs in this Concept: 4
String of secondary struct.elems. (SSEs) defining this concept: EEEE
Each SSE's a.a.range: (start resi) (end resi) SSEtype (H=Helix; E=Strand) followed by a numeric SSE ID:
(VAL109) (ASN115) E1
(GLU119) (LYS125) E2
(ILE129) (CYS134) E3
(ARG136) (GLU141) E4
Orientation angles° of SSE-pairs; those in contact shown in bold font
E1
E2 158.9° E2
E3 130.7° -65.8° E3
E4 108.2° -91.6° -58.2°
Footnote: Inferred from this concept's usages (listed below) was the angular variance of 1σ = ±13.0° about each orientation angle shown above.
Loci of concept usages (shown as a range of a.a. residue ids) in SCOP(v2.05) domains, along with their brief legend taken from SCOP
d3ob9c_ : (VAL17) (VAL40) [view usage] : b.34.13.0 |SH3-like barrel |Chromo domain-like |automated matches |automated matches |Human (Homo sapiens) [TaxId: 9606]
d2x1wd_ : (LEU185) (CYS211) [view usage] : g.17.1.0 |Cystine-knot cytokines |Cystine-knot cytokines |automated matches |automated matches |Human (Homo sapiens) [TaxId: 9606]
d3tpwa_ : (ILE102) (ASP133) [view usage] : b.85.4.0 |beta-clip |dUTPase-like |automated matches |automated matches |Mason-pfizer monkey virus [TaxId: 11855]
d2biva1 : (GLY66) (GLY90) [view usage] : b.34.9.0 |SH3-like barrel |Tudor/PWWP/MBT |automated matches |automated matches |Human (Homo sapiens) [TaxId: 9606]
d1m3dc2 : (PRO169) (MET224) [view usage] : d.169.1.6 |C-type lectin-like |C-type lectin-like |Noncollagenous (NC1) domain of collagen IV |Noncollagenous (NC1) domain of collagen IV |Cow (Bos taurus) [TaxId: 9913]
d1f60a2 : (PRO357) (SER394) [view usage] : b.44.1.1 |Elongation factor/aminomethyltransferase common domain |EF-Tu/eEF-1alpha/eIF2-gamma C-terminal domain |EF-Tu/eEF-1alpha/eIF2-gamma C-terminal domain |Elongation factor eEF-1alpha, C-terminal domain |Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
d2pi8b_ : (THR269) (GLY300) [view usage] : b.52.1.4 |Double psi beta-barrel |Barwin-like endoglucanases |MLTA-like |Membrane-bound lytic murein transglycosylase A, MLTA |Escherichia coli [TaxId: 562]
d1kxrb_ : (GLY147) (ALA181) [view usage] : d.3.1.3 |Cysteine proteinases |Cysteine proteinases |Calpain large subunit, catalytic domain (domain II) |Calpain large subunit, catalytic domain (domain II) |Norway rat (Rattus norvegicus), mu-type [TaxId: 10116]
d1piv1_ : (VAL240) (CYS271) [view usage] : b.121.4.1 |Nucleoplasmin-like/VP (viral coat and capsid proteins) |Positive stranded ssRNA viruses |Picornaviridae-like VP (VP1, VP2, VP3 and VP4) |Poliovirus coat proteins |Poliovirus type 3, strain Sabin [TaxId: 12086]
d2je9a_ : (SER110) (LEU158) [view usage] : b.29.1.1 |Concanavalin A-like lectins/glucanases |Concanavalin A-like lectins/glucanases |Legume lectins |automated matches |Mucana (Dioclea grandiflora) [TaxId: 3837]
d2f0ra_ : (LYS36) (ARG64) [view usage] : d.20.1.2 |UBC-like |UBC-like |UEV domain |Tumor susceptibility gene 101 (TSG101) |Human (Homo sapiens) [TaxId: 9606]
d1smvc_ : (PRO221) (GLU252) [view usage] : b.121.4.7 |Nucleoplasmin-like/VP (viral coat and capsid proteins) |Positive stranded ssRNA viruses |Tombusviridae-like VP |Sobemovirus coat protein |SMV (Sesbania mosaic virus) [TaxId: 12558]
d2wr7b1 : (GLU18) (GLY43) [view usage] : b.19.1.0 |Viral protein domain |Viral protein domain |automated matches |automated matches |Influenza a virus (a/singapore/1/1957(h2n2)) [TaxId: 382781]
d1li1c2 : (PRO172) (MET226) [view usage] : d.169.1.6 |C-type lectin-like |C-type lectin-like |Noncollagenous (NC1) domain of collagen IV |Noncollagenous (NC1) domain of collagen IV |Human (Homo sapiens) [TaxId: 9606]
d1l9mb4 : (ASP395) (LYS425) [view usage] : d.3.1.4 |Cysteine proteinases |Cysteine proteinases |Transglutaminase core |Transglutaminase catalytic domain |Human (Homo sapiens), TGase E3 [TaxId: 9606]
d2bs8a_ : (GLY17) (GLY50) [view usage] : b.2.3.5 |Common fold of diphtheria toxin/transcription factors/cytochrome f |Bacterial adhesins |F17c-type adhesin |automated matches |Escherichia coli [TaxId: 562]
d2bs8a_ : (SER146) (THR176) [view usage] : b.2.3.5 |Common fold of diphtheria toxin/transcription factors/cytochrome f |Bacterial adhesins |F17c-type adhesin |automated matches |Escherichia coli [TaxId: 562]
d1i78a_ : (GLY261) (PHE297) [view usage] : f.4.4.1 |Transmembrane beta-barrels |OMPT-like |Outer membrane protease OMPT |Outer membrane protease OMPT |Escherichia coli [TaxId: 562]
d1vbe1_ : (VAL240) (CYS271) [view usage] : b.121.4.1 |Nucleoplasmin-like/VP (viral coat and capsid proteins) |Positive stranded ssRNA viruses |Picornaviridae-like VP (VP1, VP2, VP3 and VP4) |Poliovirus coat proteins |Poliovirus type 3, strain Sabin [TaxId: 12086]
d2f20a1 : (TYR110) (ARG141) [view usage] : d.303.1.1 |BB1717-like |BB1717-like |BB1717-like |Hypothetical protein BT1218 |Bacteroides thetaiotaomicron [TaxId: 818]
d4uxua_ : (THR108) (THR135) [view usage] : b.96.1.0 |Nicotinic receptor ligand binding domain-like |Nicotinic receptor ligand binding domain-like |automated matches |automated matches |Human (Homo sapiens) [TaxId: 9606]
d3ztna_ : (ASP14) (LYS40) [view usage] : b.19.1.2 |Viral protein domain |Viral protein domain |Influenza hemagglutinin headpiece |automated matches |Influenza A virus [TaxId: 641501]
d3mala_ : (LEU174) (PRO212) [view usage] : b.42.6.0 |beta-Trefoil |MIR domain |automated matches |automated matches |Thale cress (Arabidopsis thaliana) [TaxId: 3702]
d4sbva_ : (ARG223) (GLU252) [view usage] : b.121.4.7 |Nucleoplasmin-like/VP (viral coat and capsid proteins) |Positive stranded ssRNA viruses |Tombusviridae-like VP |Sobemovirus coat protein |SBMV (Southern bean mosaic virus), cow pea strain [TaxId: 12139]
d2f5kf_ : (VAL17) (ILE35) [view usage] : b.34.13.3 |SH3-like barrel |Chromo domain-like |Chromo barrel domain |automated matches |Human (Homo sapiens) [TaxId: 9606]
d1i78b_ : (GLY261) (THR296) [view usage] : f.4.4.1 |Transmembrane beta-barrels |OMPT-like |Outer membrane protease OMPT |Outer membrane protease OMPT |Escherichia coli [TaxId: 562]
d1fl7b_ : (ILE8) (VAL38) [view usage] : g.17.1.4 |Cystine-knot cytokines |Cystine-knot cytokines |Gonadodropin/Follitropin |Follicle stimulating hormone, follitropin, beta chain |Human (Homo sapiens) [TaxId: 9606]
List of distinct SCOP folds where this concept is used (in one or more of its domains):
b.19, b.29, f.4, d.169, b.121, d.3, b.2, b.85, d.20, b.96, b.42, b.52, b.34, g.17, b.44, d.303