Tableau information
Concept source: d1dy7a_ amino acid (a.a.) range (VAL233)(ASP272)
nSSEs in this Concept: 4
String of secondary struct.elems. (SSEs) defining this concept: EEEE
Each SSE's a.a.range: (start resi) (end resi) SSEtype (H=Helix; E=Strand) followed by a numeric SSE ID:
(VAL233) (GLY239) E1
(ARG243) (SER248) E2
(TYR257) (TYR263) E3
(GLN267) (ASP272) E4
Orientation angles° of SSE-pairs; those in contact shown in bold font
E1
E2 127.4° E2
E3 -33.7° 160.1° E3
E4 162.0° -37.9° 162.0°
Footnote: Inferred from this concept's usages (listed below) was the angular variance of 1σ = ±8.8° about each orientation angle shown above.
Loci of concept usages (shown as a range of a.a. residue ids) in SCOP(v2.05) domains, along with their brief legend taken from SCOP
d2ovpb2 : (LEU2660) (PHE2702) [view usage] : b.69.4.1 |7-bladed beta-propeller |WD40 repeat-like |WD40-repeat |F-box/WD repeat-containing protein 7, FBXW7 |Human (Homo sapiens) [TaxId: 9606]
d4hr7g_ : (GLY80) (ALA129) [view usage] : b.84.1.1 |Barrel-sandwich hybrid |Single hybrid motif |Biotinyl/lipoyl-carrier proteins and domains |automated matches |Escherichia coli K-12 [TaxId: 83333]
d1r17a1 : (THR326) (PHE373) [view usage] : b.2.3.4 |Common fold of diphtheria toxin/transcription factors/cytochrome f |Bacterial adhesins |Fibrinogen-binding domain |Fibrinogen-binding adhesin SdrG |Staphylococcus epidermidis [TaxId: 1282]
d3fcuc_ : (LEU8) (TRP58) [view usage] : b.69.8.1 |7-bladed beta-propeller |Integrin alpha N-terminal domain |Integrin alpha N-terminal domain |Integrin alpha N-terminal domain |Human (Homo sapiens), isoform IIb [TaxId: 9606]
d3a3ja2 : (MET313) (ASN369) [view usage] : b.105.1.0 |Penicillin-binding protein associated domain |Penicillin-binding protein associated domain |automated matches |automated matches |Haemophilus influenzae [TaxId: 727]
d1c8ua1 : (HIS58) (ALA110) [view usage] : d.38.1.3 |Thioesterase/thiol ester dehydrase-isomerase |Thioesterase/thiol ester dehydrase-isomerase |Acyl-CoA thioesterase |Thioesterase II (TesB) |Escherichia coli [TaxId: 562]
d2rala1 : (GLY324) (PHE373) [view usage] : b.2.3.4 |Common fold of diphtheria toxin/transcription factors/cytochrome f |Bacterial adhesins |Fibrinogen-binding domain |Fibrinogen-binding adhesin SdrG |Staphylococcus epidermidis [TaxId: 1282]
d2w8gc_ : (VAL136) (PHE202) [view usage] : b.96.1.0 |Nicotinic receptor ligand binding domain-like |Nicotinic receptor ligand binding domain-like |automated matches |automated matches |California sea hare (Aplysia californica) [TaxId: 6500]
d2pcfb_ : (VAL170) (PRO208) [view usage] : i.4.1.1 |Electron transport chains |Electron transport chains |Electron transport chains |Cytochrome f-plastocyanin complex |Plant (Spinacia oleracea) and (Brassica rapa) [TaxId: 3562]
d3ourb_ : (LYS59) (PHE92) [view usage] : b.84.3.1 |Barrel-sandwich hybrid |Duplicated hybrid motif |Glucose permease-like |automated matches |Vibrio vulnificus [TaxId: 216895]
d3btaa1 : (ILE992) (SER1041) [view usage] : b.29.1.6 |Concanavalin A-like lectins/glucanases |Concanavalin A-like lectins/glucanases |Clostridium neurotoxins, the second last domain |Botulinum neurotoxin |Clostridium botulinum, serotype A [TaxId: 1491]
d1clca2 : (LYS67) (PHE110) [view usage] : b.1.18.2 |Immunoglobulin-like beta-sandwich |E set domains |E-set domains of sugar-utilizing enzymes |CelD cellulase, N-terminal domain |Clostridium thermocellum [TaxId: 1515]
d1fwxd2 : (VAL314) (ASN348) [view usage] : b.69.3.1 |7-bladed beta-propeller |Nitrous oxide reductase, N-terminal domain |Nitrous oxide reductase, N-terminal domain |Nitrous oxide reductase, N-terminal domain |Paracoccus denitrificans [TaxId: 266]
d3guab_ : (ALA138) (PHE204) [view usage] : b.96.1.0 |Nicotinic receptor ligand binding domain-like |Nicotinic receptor ligand binding domain-like |automated matches |automated matches |California sea hare (Aplysia californica) [TaxId: 6500]
d2mp0b_ : (LYS358) (PHE391) [view usage] : b.84.3.1 |Barrel-sandwich hybrid |Duplicated hybrid motif |Glucose permease-like |Glucose-specific factor III (glsIII) |Escherichia coli [TaxId: 562]
d3lz7d_ : (GLY77) (ASN137) [view usage] : d.38.1.5 |Thioesterase/thiol ester dehydrase-isomerase |Thioesterase/thiol ester dehydrase-isomerase |PaaI/YdiI-like |Hypothetical protein HI1161 |Haemophilus influenzae [TaxId: 727]
d4ggca_ : (ASP173) (SER210) [view usage] : b.69.4.0 |7-bladed beta-propeller |WD40 repeat-like |automated matches |automated matches |Human (Homo sapiens) [TaxId: 9606]
d1ghja_ : (ALA1) (ALA49) [view usage] : b.84.1.1 |Barrel-sandwich hybrid |Single hybrid motif |Biotinyl/lipoyl-carrier proteins and domains |Lipoyl domain of the 2-oxoglutarate dehydrogenase complex |Azotobacter vinelandii [TaxId: 354]
d2ejra3 : (GLY655) (LEU706) [view usage] : d.16.1.5 |FAD-linked reductases, C-terminal domain |FAD-linked reductases, C-terminal domain |L-aminoacid/polyamine oxidase |Lysine-specific histone demethylase 1, LSD1 |Human (Homo sapiens) [TaxId: 9606]
d2l8aa_ : (ASP388) (ASN440) [view usage] : b.2.2.0 |Common fold of diphtheria toxin/transcription factors/cytochrome f |Carbohydrate-binding domain |automated matches |automated matches |Bacillus subtilis [TaxId: 1423]
d4jfna_ : (THR83) (GLY120) [view usage] : d.170.2.1 |SRCR-like |A heparin-binding domain |A heparin-binding domain |automated matches |Human (Homo sapiens) [TaxId: 9606]
d1fwxb2 : (VAL314) (ASN348) [view usage] : b.69.3.1 |7-bladed beta-propeller |Nitrous oxide reductase, N-terminal domain |Nitrous oxide reductase, N-terminal domain |Nitrous oxide reductase, N-terminal domain |Paracoccus denitrificans [TaxId: 266]
d1f3ga_ : (LYS58) (PHE91) [view usage] : b.84.3.1 |Barrel-sandwich hybrid |Duplicated hybrid motif |Glucose permease-like |Glucose-specific factor III (glsIII) |Escherichia coli [TaxId: 562]
d2wl1a_ : (THR707) (SER745) [view usage] : b.29.1.0 |Concanavalin A-like lectins/glucanases |Concanavalin A-like lectins/glucanases |automated matches |automated matches |Human (Homo sapiens) [TaxId: 9606]
d2wo4a_ : (ASP47) (SER97) [view usage] : b.2.2.0 |Common fold of diphtheria toxin/transcription factors/cytochrome f |Carbohydrate-binding domain |automated matches |automated matches |Clostridium thermocellum [TaxId: 1515]
d2b5la1 : (ARG103) (PRO144) [view usage] : b.69.4.3 |7-bladed beta-propeller |WD40 repeat-like |DDB1-like |DDB1 |Human (Homo sapiens) [TaxId: 9606]
d3lz7a_ : (GLY77) (ASN137) [view usage] : d.38.1.5 |Thioesterase/thiol ester dehydrase-isomerase |Thioesterase/thiol ester dehydrase-isomerase |PaaI/YdiI-like |Hypothetical protein HI1161 |Haemophilus influenzae [TaxId: 727]
d4wjka_ : (THR339) (PRO391) [view usage] : b.69.8.0 |7-bladed beta-propeller |Integrin alpha N-terminal domain |automated matches |automated matches |Human (Homo sapiens) [TaxId: 9606]
List of distinct SCOP folds where this concept is used (in one or more of its domains):
b.70, b.69, b.29, b.2, b.1, b.96, d.38, b.84, d.16, i.4, b.105, d.170