Tableau information
Concept source: d3byka_ amino acid (a.a.) range (LYS174)(GLY210)
nSSEs in this Concept: 4
String of secondary struct.elems. (SSEs) defining this concept: EEEE
Each SSE's a.a.range: (start resi) (end resi) SSEtype (H=Helix; E=Strand) followed by a numeric SSE ID:
(LYS174) (SER183) E1
(TYR187) (GLN196) E2
(ASN198) (ASP203) E3
(SER205) (GLY210) E4
Orientation angles° of SSE-pairs; those in contact shown in bold font
E1
E2 169.1° E2
E3 129.8° -54.2° E3
E4 -56.2° 118.2° 169.9°
Footnote: Inferred from this concept's usages (listed below) was the angular variance of 1σ = ±13.0° about each orientation angle shown above.
Loci of concept usages (shown as a range of a.a. residue ids) in SCOP(v2.05) domains, along with their brief legend taken from SCOP
d2ewra1 : (ARG69) (ASP95) [view usage] : d.218.1.11 |Nucleotidyltransferase |Nucleotidyltransferase |TM1012-like |Hypothetical protein TM1012 |Thermotoga maritima [TaxId: 2336]
d1ix2a_ : (LYS66) (LYS104) [view usage] : b.1.18.17 |Immunoglobulin-like beta-sandwich |E set domains |Copper resistance protein C (CopC, PcoC) |Copper resistance protein C (CopC, PcoC) |Escherichia coli [TaxId: 562]
d1ec9d2 : (THR7) (GLU54) [view usage] : d.54.1.1 |Enolase N-terminal domain-like |Enolase N-terminal domain-like |Enolase N-terminal domain-like |D-glucarate dehydratase |Escherichia coli [TaxId: 562]
d1smob_ : (SER51) (GLY83) [view usage] : b.1.1.1 |Immunoglobulin-like beta-sandwich |Immunoglobulin |V set domains (antibody variable domain-like) |TREM-1 (triggering receptor expressed on myeloid cells 1) |Human (Homo sapiens) [TaxId: 9606]
d2h9fa1 : (GLY130) (PHE178) [view usage] : d.21.1.4 |Diaminopimelate epimerase-like |Diaminopimelate epimerase-like |PA0793-like |Hypothetical protein PA0793 |Pseudomonas aeruginosa [TaxId: 287]
d4eetb_ : (THR452) (LEU490) [view usage] : d.110.3.6 |Profilin-like |PYP-like sensor domain (PAS domain) |Flavin-binding PAS domain |automated matches |Thale cress (Arabidopsis thaliana) [TaxId: 3702]
d2pw0a1 : (GLY133) (PHE181) [view usage] : d.21.1.0 |Diaminopimelate epimerase-like |Diaminopimelate epimerase-like |automated matches |automated matches |Shewanella oneidensis [TaxId: 70863]
d1sjga_ : (GLY15) (ALA66) [view usage] : b.33.1.1 |ISP domain |ISP domain |Rieske iron-sulfur protein (ISP) |Toluene-4-monooxygenase system protein C, TmoC |Pseudomonas mendocina [TaxId: 300]
d3bpfb_ : (GLY180) (GLU219) [view usage] : d.3.1.1 |Cysteine proteinases |Cysteine proteinases |Papain-like |Falcipain 2 |Malaria parasite (Plasmodium falciparum) [TaxId: 5833]
d3fsda_ : (ARG91) (VAL131) [view usage] : d.17.4.0 |Cystatin-like |NTF2-like |automated matches |automated matches |Rhodospirillum rubrum [TaxId: 269796]
d1kmoa_ : (GLY129) (PRO220) [view usage] : f.4.3.3 |Transmembrane beta-barrels |Porins |Ligand-gated protein channel |Outer membrane transporter FecA |Escherichia coli [TaxId: 562]
d1ix2b_ : (LYS66) (LYS104) [view usage] : b.1.18.17 |Immunoglobulin-like beta-sandwich |E set domains |Copper resistance protein C (CopC, PcoC) |Copper resistance protein C (CopC, PcoC) |Escherichia coli [TaxId: 562]
d4g8ea1 : (GLY32) (GLY70) [view usage] : b.1.1.0 |Immunoglobulin-like beta-sandwich |Immunoglobulin |automated matches |automated matches |Human (Homo sapiens) [TaxId: 9606]
d1v2ia_ : (TYR530) (GLU566) [view usage] : b.68.1.1 |6-bladed beta-propeller |Sialidases |Sialidases (neuraminidases) |Hemagglutinin-neuraminidase glycoprotein |Human parainfluenza virus type 3 [TaxId: 11216]
d2gska_ : (TYR178) (ASN228) [view usage] : f.4.3.3 |Transmembrane beta-barrels |Porins |Ligand-gated protein channel |Outer membrane cobalamin transporter BtuB |Escherichia coli [TaxId: 562]
d4q0xl1 : (SER41) (ILE80) [view usage] : b.1.1.1 |Immunoglobulin-like beta-sandwich |Immunoglobulin |V set domains (antibody variable domain-like) |automated matches |Mouse (Mus musculus) [TaxId: 10090]
d2z77a_ : (VAL94) (TRP128) [view usage] : d.17.4.3 |Cystatin-like |NTF2-like |Ketosteroid isomerase-like |Hypothetical protein Rv0760c |Mycobacterium tuberculosis H37Rv [TaxId: 83332]
d3tvqa_ : (ASP46) (ARG82) [view usage] : d.129.3.6 |TBP-like |Bet v1-like |oligoketide cyclase/dehydrase-like |Multifunctional enzyme TcmN, cyclase/aromatase domain |Streptomyces glaucescens [TaxId: 1907]
d2edda_ : (LEU78) (THR113) [view usage] : b.1.2.0 |Immunoglobulin-like beta-sandwich |Fibronectin type III |automated matches |automated matches |Human (Homo sapiens) [TaxId: 9606]
d4hx0a_ : (ARG69) (GLY94) [view usage] : d.218.1.11 |Nucleotidyltransferase |Nucleotidyltransferase |TM1012-like |automated matches |Thermotoga maritima [TaxId: 2336]
d1ec9a2 : (THR7) (GLU54) [view usage] : d.54.1.1 |Enolase N-terminal domain-like |Enolase N-terminal domain-like |Enolase N-terminal domain-like |D-glucarate dehydratase |Escherichia coli [TaxId: 562]
d3uwca_ : (ILE160) (THR197) [view usage] : c.67.1.0 |PLP-dependent transferase-like |PLP-dependent transferases |automated matches |automated matches |Coxiella burnetii [TaxId: 777]
d2r2za1 : (GLU58) (ASP88) [view usage] : d.145.1.4 |FAD-binding/transporter-associated domain-like |FAD-binding/transporter-associated domain-like |CorC/HlyC domain-like |Putative hemolysin EF0700 |Enterococcus faecalis [TaxId: 1351]
d1reoa2 : (GLY343) (GLY375) [view usage] : d.16.1.5 |FAD-linked reductases, C-terminal domain |FAD-linked reductases, C-terminal domain |L-aminoacid/polyamine oxidase |L-aminoacid oxidase |Halys viper (Agkistrodon halys) [TaxId: 8714]
d2psob_ : (CYS1027) (LYS1075) [view usage] : d.129.3.2 |TBP-like |Bet v1-like |STAR domain |Star-related lipid transfer protein 13 |Human (Homo sapiens) [TaxId: 9606]
d1vpza_ : (GLY9) (ALA36) [view usage] : b.151.1.1 |CsrA-like |CsrA-like |CsrA-like |Carbon storage regulator homolog, CsrA |Pseudomonas aeruginosa [TaxId: 287]
d1v9ea_ : (GLU52) (GLN91) [view usage] : b.74.1.1 |Carbonic anhydrase |Carbonic anhydrase |Carbonic anhydrase |Carbonic anhydrase |Cow (Bos taurus), isozyme II [TaxId: 9913]
d3mjfa2 : (ALA195) (SER234) [view usage] : d.142.1.2 |ATP-grasp |Glutathione synthetase ATP-binding domain-like |BC ATP-binding domain-like |automated matches |Yersinia pestis [TaxId: 214092]
d2yw2a2 : (ALA193) (SER232) [view usage] : d.142.1.0 |ATP-grasp |Glutathione synthetase ATP-binding domain-like |automated matches |automated matches |Aquifex aeolicus [TaxId: 63363]
d2zjph1 : (ASN26) (VAL74) [view usage] : b.39.1.1 |Ribosomal protein L14 |Ribosomal protein L14 |Ribosomal protein L14 |Ribosomal protein L14 |Deinococcus radiodurans [TaxId: 1299]
d3u5ig_ : (LYS19) (ARG58) [view usage] : i.1.1.1 |Ribosome and ribosomal fragments |Ribosome and ribosomal fragments |Ribosome complexes |Eukaryotic, cytoplasmic (80S ribosome functional complex) |Saccharomyces cerevisiae [TaxId: 559292]
d1ktja_ : (LYS48) (PRO95) [view usage] : b.1.18.7 |Immunoglobulin-like beta-sandwich |E set domains |ML domain |Major mite allergen |House-dust mite (Dermatophagoides pteronyssinus), Der p 2 [TaxId: 6956]
List of distinct SCOP folds where this concept is used (in one or more of its domains):
b.68, c.67, i.1, b.74, b.67, d.129, f.4, d.3, b.1, d.110, d.17, d.21, d.142, d.145, d.16, d.218, d.54, b.33, b.151, b.39